mRNA_E_fasciculatus_S2_contig8066.16223.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8066.16223.1
Unique NamemRNA_E_fasciculatus_S2_contig8066.16223.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8066.16223.1 vs.
Match: Structural (maintenance of chromosomes protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ01_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 8.300e-59
Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:   19 APARLLITKMEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKLGELIHRSDTFPNLDYCRVSVHFVDILDVSGSEDDYEEV 327
            APARLLITKMEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKL LNKLGELIHRSDT+PNLD+CRVSVHFVDILDVSGSEDDYEEV
Sbjct:   82 APARLLITKMEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLCLNKLGELIHRSDTYPNLDFCRVSVHFVDILDVSGSEDDYEEV 184
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BLAST of mRNA_E_fasciculatus_S2_contig8066.16223.1 vs.
Match: Structural (maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YML7_9STRA)

HSP 1 Score: 176 bits (446), Expect = 5.670e-49
Identity = 85/101 (84.16%), Postives = 93/101 (92.08%), Query Frame = 1 
Query:   25 ARLLITKMEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKLGELIHRSDTFPNLDYCRVSVHFVDILDVSGSEDDYEEV 327
            +RLLITK+ MENFKSYGG+REIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNK+ ELIHRS+T+PNLD  +VSVHFVDI+D   SEDDY EV
Sbjct:   39 SRLLITKLVMENFKSYGGVREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSETYPNLDAAKVSVHFVDIIDDQSSEDDYAEV 139
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BLAST of mRNA_E_fasciculatus_S2_contig8066.16223.1 vs.
Match: SMC4 (protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A1Q5_9DINO)

HSP 1 Score: 157 bits (398), Expect = 2.830e-47
Identity = 73/99 (73.74%), Postives = 86/99 (86.87%), Query Frame = 1 
Query:   22 PARLLITKMEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKLGELIHRSDTFPNLDYCRVSVHFVDILDVSGSEDDY 318
            P RL+IT++E ENFKSYGG++ IGPFHK FS++VGPNGSGKSNVID MLFVFGKRAKKLRLNKL ELIH+SD +PNLD+ RVSV+F DI+D S  +D Y
Sbjct:    8 PPRLMITRLEFENFKSYGGVKSIGPFHKRFSAVVGPNGSGKSNVIDGMLFVFGKRAKKLRLNKLSELIHKSDQYPNLDFARVSVYFQDIIDTSDEDDGY 106
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BLAST of mRNA_E_fasciculatus_S2_contig8066.16223.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXC7_9STRA)

HSP 1 Score: 154 bits (390), Expect = 9.870e-47
Identity = 74/99 (74.75%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:   25 ARLLITKMEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKLGELIHRSDTFPNLDYCRVSVHFVDILDVSGSEDDYE 321
            ARL+ITKM +ENFKSY G +EIGPFHK FSSIVGPNGSGKSNVIDA+LFVFGK+AK+LRLNK+ ELIH+S T+PNLD+ RV+VHF  I D+  S+DDYE
Sbjct:    6 ARLMITKMVLENFKSYAGCQEIGPFHKRFSSIVGPNGSGKSNVIDALLFVFGKKAKQLRLNKVSELIHKSATYPNLDFTRVAVHFQLIYDIEESDDDYE 104
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BLAST of mRNA_E_fasciculatus_S2_contig8066.16223.1 vs.
Match: Structural (maintenance of chromosomes protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SP08_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.400e-43
Identity = 79/100 (79.00%), Postives = 89/100 (89.00%), Query Frame = 1 
Query:   19 APA-RLLITKMEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKLGELIHRSDTFPNLDYCRVSVHFVDILDVSGSEDD 315
            APA RL+ITKM +ENFKSYGG+REIGPFHK FSS+VGPNGSGKSNVIDAMLFVFGKRAKKLRLNK+ ELIHRS+ +PNLD  RVSVHF D+LD  G++ D
Sbjct:   11 APASRLMITKMVLENFKSYGGVREIGPFHKRFSSVVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSEQYPNLDSARVSVHFADVLDEDGADPD 110
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BLAST of mRNA_E_fasciculatus_S2_contig8066.16223.1 vs.
Match: Structural (maintenance of chromosomes protein 4 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFI0_AURAN)

HSP 1 Score: 159 bits (402), Expect = 4.890e-43
Identity = 77/103 (74.76%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:   19 APARLLITKMEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKLGELIHRSDTFPNLDYCRVSVHFVDILDVSGSEDDYEEV 327
            A  RL+I KM +ENFKSYGG REIGPFHK FSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNK+ ELIH+SDT+P+LD+ +VSVHF D++D+    D YE V
Sbjct:  845 ATPRLMIEKMVLENFKSYGGQREIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHKSDTYPDLDWAKVSVHFADVIDLQDGTDAYEVV 947
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BLAST of mRNA_E_fasciculatus_S2_contig8066.16223.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HG93_HEMAN)

HSP 1 Score: 144 bits (362), Expect = 5.650e-42
Identity = 68/102 (66.67%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:   22 PARLLITKMEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKLGELIHRSDTFPNLDYCRVSVHFVDILDVSGSEDDYEEV 327
            P RL+IT M +ENFKSY G++ IGPFHK FSS+VGPNGSGKSNVIDAMLFVFGK+AK+LRLNK+ ELIH+S+   N+ +C+VSVHF +I+D +   +DYE V
Sbjct:   19 PTRLVITHMTLENFKSYAGVQHIGPFHKRFSSVVGPNGSGKSNVIDAMLFVFGKKAKQLRLNKVSELIHKSENKMNIPFCKVSVHFNEIIDKNVDGEDYEVV 120
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BLAST of mRNA_E_fasciculatus_S2_contig8066.16223.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KBD7_9STRA)

HSP 1 Score: 144 bits (363), Expect = 6.650e-42
Identity = 73/106 (68.87%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:   22 PARLLITKMEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKLGELIHRSDTFPNLDYCRVSVHFVDILDV-------SGSEDDY 318
            P+RL+IT ME+ENFKSYGG++ IGPFHKCFSS+VGPNGSGKSNVIDAMLFVFGKRAKKLRLNK+ ELIH S +   L Y RVSV   +I+DV       SG++DD+
Sbjct:   25 PSRLMITHMELENFKSYGGIKTIGPFHKCFSSVVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHNSSS-EKLPYARVSVFMQEIMDVDSNARLNSGADDDH 129
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BLAST of mRNA_E_fasciculatus_S2_contig8066.16223.1 vs.
Match: Structural (maintenance of chromosomes protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K7Y1_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.470e-41
Identity = 75/104 (72.12%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:   22 PARLLITKMEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKLGELIHRSDTFPN--LDYCRVSVHFVDILDVSGSEDDYEEV 327
            P+RL+ITKM +ENFKSY G++EIGPFHKCFSS+VGPNGSGKSNVIDAMLFVFGKRAKKLRLNK+ ELIH SD + +  L Y RVSVHF +I+D    +DDY  V
Sbjct:   64 PSRLMITKMVLENFKSYAGVKEIGPFHKCFSSVVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHSSDAYKDNPLQYARVSVHFQEIVDTGDGDDDYRVV 167
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BLAST of mRNA_E_fasciculatus_S2_contig8066.16223.1 vs.
Match: Structural (maintenance of chromosomes protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PWX0_9STRA)

HSP 1 Score: 154 bits (388), Expect = 3.720e-41
Identity = 75/104 (72.12%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:   22 PARLLITKMEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKLGELIHRSDTFPN--LDYCRVSVHFVDILDVSGSEDDYEEV 327
            PARL+ITKM +ENFKSY G++ IGPFHKCFSS+VGPNGSGKSNVIDAMLFVFGKRAKKLRLNK+ ELIH SD +    L+Y RVSV+F +I+D    +DDYE V
Sbjct:   25 PARLMITKMVLENFKSYAGVKTIGPFHKCFSSVVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHSSDAYKERPLEYARVSVYFNEIIDTGDGDDDYEVV 128
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8066.16223.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Structural8.300e-5997.09maintenance of chromosomes protein n=2 Tax=Ectocar... [more]
Structural5.670e-4984.16maintenance of chromosomes protein n=1 Tax=Tribone... [more]
SMC42.830e-4773.74protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 Ta... [more]
Hypothetical9.870e-4774.75protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]
Structural1.400e-4379.00maintenance of chromosomes protein n=1 Tax=Pelagom... [more]
Structural4.890e-4374.76maintenance of chromosomes protein 4 n=1 Tax=Aureo... [more]
Hypothetical5.650e-4266.67protein (Fragment) n=1 Tax=Hemiselmis andersenii T... [more]
Hypothetical6.650e-4268.87protein (Fragment) n=1 Tax=Leptocylindrus aporus T... [more]
Structural1.470e-4172.12maintenance of chromosomes protein n=1 Tax=Odontel... [more]
Structural3.720e-4172.12maintenance of chromosomes protein n=1 Tax=Skeleto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8066contigE_fasciculatus_S2_contig8066:1670..1996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score205.7
Seed ortholog evalue1.1e-50
Seed eggNOG ortholog2880.D8LQ01
Preferred nameSMC4
Model size327
KEGG koko:K06675
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000012,GO:0000070,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000796,GO:0000798,GO:0000799,GO:0000819,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006323,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0007275,GO:0007399,GO:0007422,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008278,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010032,GO:0010154,GO:0015616,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030554,GO:0030892,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0034990,GO:0035639,GO:0036094,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051383,GO:0051716,GO:0061458,GO:0061982,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1903047,GO:1990837
Exons1
EggNOG free text desc.chromosome condensation
EggNOG OGsCOG1196@1,KOG0996@2759
Cds size327
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842467.5284193-CDS-E_fasciculatus_S2_contig8066:1669..19961696842467.5284193-CDS-E_fasciculatus_S2_contig8066:1669..1996Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8066 1670..1996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8066.16223.1prot_E_fasciculatus_S2_contig8066.16223.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8066 1670..1996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8066.16223.1

>prot_E_fasciculatus_S2_contig8066.16223.1 ID=prot_E_fasciculatus_S2_contig8066.16223.1|Name=mRNA_E_fasciculatus_S2_contig8066.16223.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=109bp
QPEEPPAPARLLITKMEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSN
VIDAMLFVFGKRAKKLRLNKLGELIHRSDTFPNLDYCRVSVHFVDILDVS
GSEDDYEEV
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mRNA from alignment at E_fasciculatus_S2_contig8066:1670..1996-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8066.16223.1 ID=mRNA_E_fasciculatus_S2_contig8066.16223.1|Name=mRNA_E_fasciculatus_S2_contig8066.16223.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=327bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8066:1670..1996- (Ectocarpus fasciculatus EfasUO2)
CAACCGGAAGAGCCTCCCGCGCCGGCGCGGCTGCTGATCACAAAGATGGA
GATGGAGAACTTCAAGTCCTACGGCGGGCTCCGCGAGATCGGCCCCTTCC
ACAAGTGCTTCTCTTCCATCGTGGGGCCCAACGGGTCCGGCAAGTCCAAC
GTGATCGACGCCATGCTCTTCGTCTTCGGCAAGAGGGCCAAGAAGCTCAG
GCTGAACAAGCTTGGCGAGCTCATCCACCGCTCGGACACCTTCCCGAACC
TGGACTACTGCCGCGTGTCGGTGCACTTCGTGGACATCTTGGACGTGTCT
GGGTCGGAGGACGACTACGAGGAGGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8066:1670..1996-

>mRNA_E_fasciculatus_S2_contig8066.16223.1 ID=mRNA_E_fasciculatus_S2_contig8066.16223.1|Name=mRNA_E_fasciculatus_S2_contig8066.16223.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=327bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8066:1670..1996- (Ectocarpus fasciculatus EfasUO2)
CAACCGGAAGAGCCTCCCGCGCCGGCGCGGCTGCTGATCACAAAGATGGA
GATGGAGAACTTCAAGTCCTACGGCGGGCTCCGCGAGATCGGCCCCTTCC
ACAAGTGCTTCTCTTCCATCGTGGGGCCCAACGGGTCCGGCAAGTCCAAC
GTGATCGACGCCATGCTCTTCGTCTTCGGCAAGAGGGCCAAGAAGCTCAG
GCTGAACAAGCTTGGCGAGCTCATCCACCGCTCGGACACCTTCCCGAACC
TGGACTACTGCCGCGTGTCGGTGCACTTCGTGGACATCTTGGACGTGTCT
GGGTCGGAGGACGACTACGAGGAGGTG
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