mRNA_E_fasciculatus_S2_contig8055.16216.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8055.16216.1
Unique NamemRNA_E_fasciculatus_S2_contig8055.16216.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8055.16216.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3P9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 9.850e-14
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   28 GNPSIDYFVSAEAMEGQHRTALSDQDEPYSEQVVLLGGQGIWYARPMAHDLPSGMSDP 201
            G+P+IDYF+SA+AME   RT +   D+PYSEQVVL GGQGIWY  P+   LPS ++ P
Sbjct:   98 GSPNIDYFLSADAMEHPDRTTMLPDDDPYSEQVVLFGGQGIWYPAPV---LPSELAPP 152
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BLAST of mRNA_E_fasciculatus_S2_contig8055.16216.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEU8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.950e-13
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   28 GNPSIDYFVSAEAMEGQHRTALSDQDEPYSEQVVLLGGQGIWYARPMAHDLPS 186
            GNPSIDYFVSA+ ME   RT +S   +PYSEQVVLLGGQGIWY  P   +L S
Sbjct:  103 GNPSIDYFVSADRMEFAKRTRVSPDLDPYSEQVVLLGGQGIWYDVPFRANLTS 155
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BLAST of mRNA_E_fasciculatus_S2_contig8055.16216.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK41_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 3.570e-13
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   28 GNPSIDYFVSAEAMEGQHRTALSDQDEPYSEQVVLLGGQGIWYARPMAHDLPSGMSDP 201
            G+P+IDYF+SA+ ME   RT +   D+PYSEQVVL GGQGIWY  P+   LPS ++ P
Sbjct:   93 GSPNIDYFLSADVMEHPDRTTMLPDDDPYSEQVVLFGGQGIWYPTPV---LPSELAPP 147
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BLAST of mRNA_E_fasciculatus_S2_contig8055.16216.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWG3_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.650e-13
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   28 GNPSIDYFVSAEAMEGQHRTALSDQDEPYSEQVVLLGGQGIWYARPMAHDLPSGMS 195
            GNP IDY++SA+  E   R  +S   +PY+EQVVLLGGQGIWY  P   D P+  S
Sbjct:   54 GNPHIDYYISADRTESPRRARVSADLDPYTEQVVLLGGQGIWYDEPAPFDAPADTS 109
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BLAST of mRNA_E_fasciculatus_S2_contig8055.16216.1 vs.
Match: Putative (methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH1_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 6.010e-11
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   28 GNPSIDYFVSAEAMEGQHRTALSDQDEPYSEQVVL 132
            GNPSIDYFVS E MEGQHRTALSD+DEPYSEQ + 
Sbjct:  582 GNPSIDYFVSTEVMEGQHRTALSDKDEPYSEQSLF 616
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BLAST of mRNA_E_fasciculatus_S2_contig8055.16216.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K5W7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 9.990e-10
Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   22 FPGNP-------SIDYFVSAEAMEGQHRTALSDQDEPYSEQVVLLGGQGIWYARP 165
            F GNP        IDY++SA+ ME   RT L    EPYSEQ+VLL GQGIWY RP
Sbjct:  557 FWGNPVTSGRGMEIDYYISADIMEAPERTKLPPSLEPYSEQLVLLQGQGIWYRRP 611
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BLAST of mRNA_E_fasciculatus_S2_contig8055.16216.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8RMR4_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.540e-9
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   28 GNPSIDYFVSAEAMEGQHRTALSDQDEPYSEQVVLLGGQGIWYARPMAHDLPSGMSDP 201
            G  SIDYFVSA+ ME  +RT   D+   +SEQVVLL GQGIWY RP    +P G+  P
Sbjct:  621 GRSSIDYFVSADRMEHPYRTLAGDE---WSEQVVLLDGQGIWYRRP---SIPEGLPYP 672
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BLAST of mRNA_E_fasciculatus_S2_contig8055.16216.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZLD0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.550e-9
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   28 GNPSIDYFVSAEAMEGQHRTALSDQDEPYSEQVVLLGGQGIWYARPMAHDLPSGMSDP 201
            G  SIDYFVSA+ ME  +RT   D+   +SEQVVLL GQGIWY RP    +P G+  P
Sbjct:  621 GRSSIDYFVSADRMEHPYRTLAGDE---WSEQVVLLDGQGIWYRRP---SIPEGLPYP 672
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BLAST of mRNA_E_fasciculatus_S2_contig8055.16216.1 vs.
Match: Aste57867_11675 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTM2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.800e-6
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:   28 GNPSIDYFVSAEAMEGQHRTALSDQDEPYSEQVVLLGGQGIWYARP 165
            G PSIDYF+SA+AME      +   +  YSEQVVLL G GIWY +P
Sbjct:  569 GIPSIDYFISADAMESSPDPMI---EVHYSEQVVLLSGTGIWYDKP 611
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8055.16216.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Uncharacterized9.850e-1458.62protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical2.950e-1366.04protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Uncharacterized3.570e-1356.90protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical3.650e-1353.57protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Putative6.010e-1182.86methyltransferase n=1 Tax=Ectocarpus siliculosus T... [more]
Hypothetical9.990e-1056.36protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
Hypothetical2.540e-955.17protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical2.550e-955.17protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Aste57867_116751.800e-656.52protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8055contigE_fasciculatus_S2_contig8055:5908..6315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score70.5
Seed ortholog evalue3.5e-10
Seed eggNOG ortholog2880.D7FK41
Model size206
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2CYFD@1,2S40I@2759
Cds size204
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842466.750378-CDS-E_fasciculatus_S2_contig8055:5907..60301696842466.750378-CDS-E_fasciculatus_S2_contig8055:5907..6030Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8055 5908..6030 +
1696842466.7629488-CDS-E_fasciculatus_S2_contig8055:6234..63151696842466.7629488-CDS-E_fasciculatus_S2_contig8055:6234..6315Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8055 6235..6315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8055.16216.1prot_E_fasciculatus_S2_contig8055.16216.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8055 5908..6315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8055.16216.1

>prot_E_fasciculatus_S2_contig8055.16216.1 ID=prot_E_fasciculatus_S2_contig8055.16216.1|Name=mRNA_E_fasciculatus_S2_contig8055.16216.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=68bp
MFVSALGFPGNPSIDYFVSAEAMEGQHRTALSDQDEPYSEQVVLLGGQGI
WYARPMAHDLPSGMSDPT
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mRNA from alignment at E_fasciculatus_S2_contig8055:5908..6315+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8055.16216.1 ID=mRNA_E_fasciculatus_S2_contig8055.16216.1|Name=mRNA_E_fasciculatus_S2_contig8055.16216.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=408bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8055:5908..6315+ (Ectocarpus fasciculatus EfasUO2)
ATGTTTGTGTCCGCTCTTGGCTTTCCAGGGAACCCTTCAATAGACTACTT
CGTGTCTGCCGAGGCGATGGAAGGGCAACACCGAACAGCGCTCTCTGACC
AAGACGAGCCCTACTCAGAGCAGGTACAATCAATTCTGCGTGAGGTACGC
ACAAGTCAAGACTGTTTCGCTCAAAGAGTGTAGTACTTGATATTGTATTC
GAAAAAACAGGCTGCAATCCGAGCCACGGCCTGCGAACAGAATGCATTCG
TAGGGCGAATTTTCCTGACGGTATGCATGAGTTGCTCAAGCGGGAAATAC
CCTGGTGGCGTGCGTGTTGCCCCGAAGGTGGTTTTGCTAGGAGGGCAGGG
CATCTGGTACGCGCGGCCGATGGCGCATGATTTGCCATCAGGAATGAGTG
ACCCAACA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8055:5908..6315+

>mRNA_E_fasciculatus_S2_contig8055.16216.1 ID=mRNA_E_fasciculatus_S2_contig8055.16216.1|Name=mRNA_E_fasciculatus_S2_contig8055.16216.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=204bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8055:5908..6315+ (Ectocarpus fasciculatus EfasUO2)
ATGTTTGTGTCCGCTCTTGGCTTTCCAGGGAACCCTTCAATAGACTACTT
CGTGTCTGCCGAGGCGATGGAAGGGCAACACCGAACAGCGCTCTCTGACC
AAGACGAGCCCTACTCAGAGCAGGTGGTTTTGCTAGGAGGGCAGGGCATC
TGGTACGCGCGGCCGATGGCGCATGATTTGCCATCAGGAATGAGTGACCC
AACA
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