mRNA_E_fasciculatus_S2_contig8052.16215.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8052.16215.1
Unique NamemRNA_E_fasciculatus_S2_contig8052.16215.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8052.16215.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI)

HSP 1 Score: 602 bits (1551), Expect = 1.270e-204
Identity = 413/556 (74.28%), Postives = 431/556 (77.52%), Query Frame = 1 
Query:    1 DLGYVPYDSAAVRSATDTGGGDAGTGTGGWTDSSPAGSSVSXXXXXXXXXXXXXXXXXXXXXX---VARRKGFGRFKVFGAMKSLLRPQADVGSTKNGGXXXNSSTERGTPTPPFDISPAPSFSPTNPVGVTVVASXXXXXXXXXXXXXXXXX----------LAALLSGEHEGLSREEKVGGEYQGE-EEKSCRPSWLEGREEEXXXXXXXXXXXXXXXXXXED--ARWLGGGRECKQPDEGVEESKSCSFLLPRAPGG-TAERTAPPPASTNGNPARQLP---EGRAPPPSQLLAGGSSGSPGSQAMAXXXXXXXXXXXXXEGEAATSAARQRGKGWRTKIKRRSRRRDRGPQGGIAAAGGAEXXXXXXXXXXXXVSPAAAGGGELAAEAAAPVAVTSPGRTPGVAGGAGERPSQGEDAGARGEEGAVTGLTEMSRTAQPVRELTPHLVEELDGAGGGFTLTVFKYNKQDQVPSPLVCGKFATSYEADRAAEAFSSPVWHEPTANSTCAECHSAFRPVLQRRRHHCRNCGRLVCTTCALRFWPKHMLPHSYRIS 1608
            DLGYVPYD AAVRSATD+GGGD  +GTGGWTD SPAGS   XXXXXXXXXXX              V +RKGFGRFKVFGAMKSLLRPQADV   KNGG   NSSTERGTPTPPF ISPAPSFSPTNP GV VVAS XXXXXXXXXXXXXXXX          LAALLSGEHEGL REEKV G+YQG+ EEKSCRPSWLEGR EE     XXXXXXXXXXXXX     RWLGGGRECKQP EGVEESKS  FLLPRAPGG TAERT PPP STN    RQLP   EG+AP P  LLAGGS GS  ++AMA XXXXXXXXXX  EG  ATSAARQRGKGWRTKIKRRSRRRD+ P+G  AAAG  E            +SPAAAG      EAAAP  +T+ G +PG A   G+R  +GE +GA  EE AV  LTEMSR AQPVRELTPHLVEELDG GGGFTLTVFKYNKQDQVP+PLVCGKFATSYEADRAAEAFSSPVWHEPT NSTCAEC S FRPVLQRRRHHCRNCGRLVCTTCALRFWPKHMLPHSYR S
Sbjct:   19 DLGYVPYDRAAVRSATDSGGGDTSSGTGGWTDGSPAGSXXXXXXXXXXXXXXVYGLSSAGGAAGATVGKRKGFGRFKVFGAMKSLLRPQADVERAKNGGG--NSSTERGTPTPPFAISPAPSFSPTNPGGVRVVASGXXXXXXXXXXXXXXXXXXRTAAQEAALAALLSGEHEGLFREEKVEGDYQGDGEEKSCRPSWLEGRREEDKKGEXXXXXXXXXXXXXXXXXTRWLGGGRECKQPGEGVEESKSSFFLLPRAPGGSTAERTVPPPVSTNRIRPRQLPSTEEGQAPSP--LLAGGS-GSRDAEAMAAXXXXXXXXXXT-EGAPATSAARQRGKGWRTKIKRRSRRRDQEPEGDFAAAG-TEAGAAESQGPSPILSPAAAGXXXXXXEAAAPAGLTALGLSPGTAERGGKRSLRGEGSGASEEEAAVARLTEMSRAAQPVRELTPHLVEELDGGGGGFTLTVFKYNKQDQVPTPLVCGKFATSYEADRAAEAFSSPVWHEPTPNSTCAECQSVFRPVLQRRRHHCRNCGRLVCTTCALRFWPKHMLPHSYRTS 567
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8052.16215.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE)

HSP 1 Score: 565 bits (1457), Expect = 1.570e-189
Identity = 385/548 (70.26%), Postives = 408/548 (74.45%), Query Frame = 1 
Query:    1 DLGYVPYDSAAVRSATDTGGGDAGTGTGGWTDSSPAGSSVSXXXXXXXXXXXXXXXXXXXXXXVARRKGFGRFKVFGAMKSLLRPQADVGSTKNGGXXXNSSTERGTPTPPFDISPAPSFSPTNPVGVTVVASXXXXXXXXXXXXXXXXX---LAALLSGEHEGLSREEKVGGEYQG--EEEKSCRPSWLEGREEEXXXXXXXXXXXXXXXXXXEDARWLGGGRECKQPDEGVEESKSCSFLLPRAPGG-TAERTAPPPASTNGNPARQLP---EGRAPPPSQLLAGGSSGSPGSQAMAXXXXXXXXXXXXXEGEAATSAARQRGKGWRTKIKRRSRRRDRGPQGGIAAAG---GAEXXXXXXXXXXXXVSPAAAGGGELAAEAAAPVAVTSPGRTPGVAGGAGERPSQGEDAGARGEEGAVTGLTEMSRTAQPVRELTPHLVEELDGAGGGFTLTVFKYNKQDQVPSPLVCGKFATSYEADRAAEAFSSPVWHEPTANSTCAECHSAFRPVLQRRRHHCRNCGRLVCTTCALRFWPKHMLPHSYRIS 1608
            DLGY+PYD AAVRSATD+GGG  G+   GWTD S       XXXXXXXXXXXXXXXXXXXXX VARRKGFGRFKVFGAMKSLLRPQAD    KNGG   NSS+ERGTPTPPF +SPAPS+SPTNPVG  VVAS                    LAALLSGEHEGL REE V G+YQG  EE KSCRPSWLE  E++ XXXXXXXXXXXXX    ED RWL GGRECKQPDEGVEES+S SF+ PRAPGG T E T  PPASTN  P R+LP   EG+AP  S LLAGGS GS  ++AMA    XXXXXXXXX     T AARQRGKGWRTKIKRRSRRRD+GPQGG AAAG   GA           XX                APV +T+ G +PG AGG GERP QGE +GA  EE AVT LTEMSR AQ VRELTPHLVEELDG GGGFTLTVFKYNKQDQVP+PLVCGKFATSYEADRAAE FSSPVWHEPT NSTCAEC S+FRPV QRR+HHCRNCGRLVCTTCA RFWPKHMLPHSYR S
Sbjct:   98 DLGYMPYDRAAVRSATDSGGGGTGSANSGWTDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVARRKGFGRFKVFGAMKSLLRPQADAERAKNGGG--NSSSERGTPTPPFAMSPAPSYSPTNPVGGRVVASGGDGRCRGGGEGGTAAQEATLAALLSGEHEGLFREENVDGDYQGDGEEVKSCRPSWLE--EDKKXXXXXXXXXXXXXGRGKEDTRWLEGGRECKQPDEGVEESRSPSFVFPRAPGGGTTEGTVSPPASTNNIPPRRLPSTEEGQAP--SSLLAGGS-GSRDAEAMAAARAXXXXXXXXXX-XXXTFAARQRGKGWRTKIKRRSRRRDQGPQGGFAAAGTEAGAAESQGPSPILSXXXXXXXXXXXXXXXXXXAPVGLTALGLSPGAAGGGGERPLQGEGSGASEEEAAVTRLTEMSRAAQSVRELTPHLVEELDGGGGGFTLTVFKYNKQDQVPTPLVCGKFATSYEADRAAETFSSPVWHEPTPNSTCAECQSSFRPVFQRRKHHCRNCGRLVCTTCAWRFWPKHMLPHSYRTS 637
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8052.16215.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.190e-26
Identity = 66/137 (48.18%), Postives = 88/137 (64.23%), Query Frame = 1 
Query: 1195 EDAGARGEEGAVTGLTEMSRTAQPVRELTPHLVEELDGAGGGFTLTVFKYNKQDQVPSPLVCGKFATSYEADRAAEAFSSPVWHEPTANSTCAECHSAFRPVLQRRRHHCRNCGRLVCTTCALRFWPKHMLPHSYRI 1605
            ED G  G+  +V G    +R  +  RELTPH + +     G F+++V++ NKQD  P  +  G + T+YE  RAAE+FS P+W EP  +S CA C S F  VL+ RRHHCRNCGRLVC+ CA RFWP+ MLP +Y +
Sbjct:  298 EDGGGGGDRASVAG----ARRGR-FRELTPHEMHQTPE--GKFSVSVWRKNKQDAEPVEVSVGVYDTAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLK-RRHHCRNCGRLVCSACAERFWPRSMLPPTYNV 426
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8052.16215.1 vs.
Match: FYVE-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM9_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 5.350e-26
Identity = 53/97 (54.64%), Postives = 69/97 (71.13%), Query Frame = 1 
Query: 1315 GGFTLTVFKYNKQDQVPSPLVCGKFATSYEADRAAEAFSSPVWHEPTANSTCAECHSAFRPVLQRRRHHCRNCGRLVCTTCALRFWPKHMLPHSYRI 1605
            G F+++V++ NKQD  P  +  G + T+YE  RAAE+FS P+W EP  +S CA C S F  VL+ RRHHCRNCGRLVC+ CA RFWP+ MLP +Y +
Sbjct:    7 GKFSVSVWRKNKQDAEPVEVSVGVYDTAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLK-RRHHCRNCGRLVCSACAERFWPRSMLPPTYNV 102
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8052.16215.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U598_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.300e-5
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 1 
Query: 1432 SPVWHEPTANSTCAECHSAFRPVLQRRRHHCRNCGRLVCTTCALRFWPKHMLPH 1593
            +PVWH   ++  C  C+SAF   L RRRHHCRNCG LVC+ C+     K  LPH
Sbjct:  341 APVWHSNQSSKKCEVCNSAF--TLLRRRHHCRNCGDLVCSNCSSH---KIELPH 389
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8052.16215.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized1.270e-20474.28protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.570e-18970.26protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.190e-2648.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
FYVE-type5.350e-2654.64domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical1.300e-551.85protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8052contigE_fasciculatus_S2_contig8052:2432..6878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score608.2
Seed ortholog evalue3.7e-171
Seed eggNOG ortholog2880.D7FYF4
Model size1608
KEGG koko:K15688
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0023052,GO:0030587,GO:0032502,GO:0035556,GO:0044424,GO:0044444,GO:0044464,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051703,GO:0051704,GO:0051716,GO:0065007,GO:0090702,GO:0099120
Exons4
EggNOG free text desc.negative regulation of chemokine (C-C motif) ligand 5 production
EggNOG OGsKOG1571@1,KOG1571@2759
Ec32 ortholog descriptionZinc finger, FYVE/PHD-type
Ec32 orthologEc-19_001200.1
EC2.3.2.27
Cds size1608
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842466.677443-CDS-E_fasciculatus_S2_contig8052:2431..25731696842466.677443-CDS-E_fasciculatus_S2_contig8052:2431..2573Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8052 2432..2573 -
1696842466.691661-CDS-E_fasciculatus_S2_contig8052:3716..38291696842466.691661-CDS-E_fasciculatus_S2_contig8052:3716..3829Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8052 3717..3829 -
1696842466.7074034-CDS-E_fasciculatus_S2_contig8052:4605..57181696842466.7074034-CDS-E_fasciculatus_S2_contig8052:4605..5718Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8052 4606..5718 -
1696842466.719616-CDS-E_fasciculatus_S2_contig8052:6638..68781696842466.719616-CDS-E_fasciculatus_S2_contig8052:6638..6878Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8052 6639..6878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8052.16215.1prot_E_fasciculatus_S2_contig8052.16215.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8052 2432..6878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8052.16215.1

>prot_E_fasciculatus_S2_contig8052.16215.1 ID=prot_E_fasciculatus_S2_contig8052.16215.1|Name=mRNA_E_fasciculatus_S2_contig8052.16215.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=536bp
DLGYVPYDSAAVRSATDTGGGDAGTGTGGWTDSSPAGSSVSGGGGGGGGG
GYGSSSAGGASAAVARRKGFGRFKVFGAMKSLLRPQADVGSTKNGGGGGN
SSTERGTPTPPFDISPAPSFSPTNPVGVTVVASGGGGGAGGGRTSTQAAA
LAALLSGEHEGLSREEKVGGEYQGEEEKSCRPSWLEGREEEDTEEKSCRP
SWLEGRGEEEDARWLGGGRECKQPDEGVEESKSCSFLLPRAPGGTAERTA
PPPASTNGNPARQLPEGRAPPPSQLLAGGSSGSPGSQAMAAAMTAAAAAA
AATEGEAATSAARQRGKGWRTKIKRRSRRRDRGPQGGIAAAGGAEAEAAD
SQAPSPSVSPAAAGGGELAAEAAAPVAVTSPGRTPGVAGGAGERPSQGED
AGARGEEGAVTGLTEMSRTAQPVRELTPHLVEELDGAGGGFTLTVFKYNK
QDQVPSPLVCGKFATSYEADRAAEAFSSPVWHEPTANSTCAECHSAFRPV
LQRRRHHCRNCGRLVCTTCALRFWPKHMLPHSYRIS
back to top

mRNA from alignment at E_fasciculatus_S2_contig8052:2432..6878-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8052.16215.1 ID=mRNA_E_fasciculatus_S2_contig8052.16215.1|Name=mRNA_E_fasciculatus_S2_contig8052.16215.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4447bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8052:2432..6878- (Ectocarpus fasciculatus EfasUO2)
GATCTTGGCTACGTGCCGTACGACAGTGCGGCCGTGCGGAGCGCCACGGA
CACCGGCGGTGGTGACGCCGGTACCGGTACCGGCGGTTGGACTGACAGCA
GTCCCGCTGGCAGCTCCGTTTCCGGTGGCGGTGGCGGCGGTGGCGGCGGC
GGCTACGGGTCGTCGTCCGCCGGGGGGGCGTCGGCGGCGGTAGCGAGGAG
GAAAGGGTTCGGCCGCTTCAAGGTGTTCGGAGCGATGAAGGTGCCCAGGG
TCTTCTTTCTATCTCTCTTGCTAAAAAGTTGTGTGTATTTCCGTCTCTTA
TTCTTTGTTTATTTGTTTCTTGAATTGTTTTTTTTTTTATGTATCTTTCG
ATCAGATGAGTACGGCTCAGCTCAATGATCTCTTCCGCAGATGTTACTCC
GGGAAATACCACGTTTTGTTTCTCTTTGTCTGGTCGCATAGCGGAAAGAA
TAATTGCGGCTTGGCTGTGTTGAGAGGCGGTGTTGGGATAGGGTATGACT
ATGACGCTAGCGGTCATGGCACCTTGTTCGGCATCCTCGTGTCTCTTGTT
GCTTGTCAGGTCATGACCACGGAGTTCAACTTGGAAGAGTAGAGAGGAGG
AGGTTGGGTGGAAGTCCTGACTCGTACTAAAATAGTGCAGTTTTCCTGTG
TGAACACAACAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCATCA
ACCAAATACTGTTTGTGAGTCAACACAACACAAAAAAACACAAGAGCTAT
TGCAGCAACAGAGGCTTGTTTTCTGCGTGTCACGTAATTTGGCACAATTA
AAATGAAGGTGGACAAAACGTGCGACTTGTCCCCCTTCCCCCGAACAAAG
ACATTTACGACGCTCTTTTCGGTAGGCCGCGGATGACACGTCTTGCGTCC
GAGAAGCAGCCGGTGACACTCATGGACACACGGCGGTGCCCAACGCTAGA
CCGTCTACATCCTTGCGGGAAGTTTTTCGATGCTGCTTTCCCCGCCACTG
CTGTCACCGGGCTTGACCAGCGTTTCGGCGGCACGGTGTTGTGAACCCAT
ACGACCCTCCCTGACCCACGATACCACGGACGTTGCCTTCGTAACCCCCC
CGAACACATCTTGCATTTGCGGCACTTCTTGTCTTTTTCTTTTTCCCCAT
GATGGAACAGAGCCTTTTGCGTCCACAGGCAGACGTGGGGTCCACTAAGA
ACGGCGGCGGCGGCGGTAACTCTTCCACCGAGCGAGGCACTCCGACCCCT
CCCTTCGACATCAGCCCGGCCCCCTCCTTCTCCCCTACAAACCCCGTTGG
GGTAACGGTCGTTGCCAGCGGCGGCGGCGGGGGCGCGGGGGGGGGGCGAA
CGTCGACCCAAGCCGCGGCCCTAGCAGCGCTCCTTTCGGGAGAACACGAA
GGGCTGTCCCGGGAAGAGAAGGTGGGCGGCGAGTACCAGGGCGAGGAGGA
AAAGAGCTGCCGGCCGAGCTGGCTGGAGGGGCGGGAAGAGGAGGATACGG
AGGAGAAGAGCTGCCGGCCTAGCTGGCTGGAGGGACGGGGAGAGGAGGAG
GATGCGAGGTGGTTGGGGGGAGGGCGGGAGTGCAAGCAGCCGGACGAAGG
CGTGGAAGAATCCAAGTCTTGTTCTTTCCTTCTCCCTCGAGCCCCGGGGG
GCACCGCCGAACGGACGGCACCCCCCCCTGCCAGCACCAACGGCAACCCC
GCTCGCCAGCTTCCGGAGGGCCGAGCTCCACCTCCGTCGCAGTTGCTGGC
TGGGGGTAGTAGCGGCAGCCCCGGTTCTCAAGCGATGGCCGCGGCGATGA
CGGCGGCGGCGGCAGCGGCGGCGGCGACGGAGGGGGAGGCGGCGACGTCA
GCGGCAAGGCAGCGGGGGAAGGGGTGGCGGACGAAGATCAAGCGCCGAAG
TCGCCGGCGAGATCGAGGACCTCAGGGAGGGATCGCTGCTGCCGGAGGAG
CCGAAGCCGAAGCCGCTGACTCCCAAGCCCCCTCGCCGAGTGTAAGCCCC
GCCGCCGCCGGGGGCGGTGAGCTTGCGGCGGAAGCGGCGGCACCGGTAGC
GGTGACGTCGCCTGGCCGTACCCCCGGTGTGGCGGGGGGAGCAGGCGAGA
GGCCGTCGCAGGGGGAGGATGCCGGGGCTAGGGGAGAAGAGGGGGCGGTG
ACGGGCTTGACGGAGATGTCGCGGACGGCGCAACCGGTGCGCGAGCTCAC
TCCGCACCTGGTGGAGGAGTTGGACGGGGCCGGGGGCGGTTTCACCCTCA
CGGTGTTCAAGTACAACAAGCAGGTGGGGCCGGCGTGGGGGTAAGGAAGG
CATGCTGCCTGAAAGCCGGAATTGCTGTATGCCGGAATTACTAACGCGCT
GTATGGACACATGAGCCTCACATATGTGGTTTGGACGTACTGGAAGCCGG
TGCGGCGATGAAGCCGTGCAGGTGTTTACTCCTCAGCATGGCCACATGGC
TGCTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCCGATT
TCAGCTGTGTATTGCAAGCCACAACAAGCGGGTGGATTCCCTCAGTTTTC
TGGGGGGTGTCTACGGCGATTTTTCTCTTGTCTCTCGCTCTCTCTGTGTA
CGCCTGTGATTCTCTCTCTTTGTATAGATATCTCTTCTTTCTTTTCGGCC
TTTTTGTCTCTTTTCAATATGCCCTCCCCGTCTCCACTCTCTCTCTCTCT
ATCTCTATTGGCGCTATTCGCGGTAGGAGACACGCAGAGTGGATCATAGG
TGGGGCGTGTCCTTGGTGCCCACACACTTTCGATCTCCCCCTCGTCAAAT
CTCCGTCCTCCTTACTATTAACTCCCCAAATCCCACCCCACAGCTGCTGC
TTCCCGTCCCTCCCACGCCTTGACCCCCCGTCGTGTGTCTGGGGAGTGGT
GTCACCACCCTACTGCTTTCACATCCCTGCCTCCATAACATGGAACATAC
CATAATGTGCACGACCCCCCGTCCTCTTAACCCCCCCTCCTCCCCCCCCC
CCAAACGAAAACGCCTTCCAAACACGACGGCAACCGCTCTCCGCGGCAGG
ACCAAGTGCCTAGCCCCCTGGTGTGCGGGAAGTTCGCCACGTCGTACGAG
GCCGACAGAGCCGCGGAGGCGTTTTCGTCTCCCGTGTGGCACGAACCCAC
CGCAAACTCCACGTGAGTGGTCGTGTGGGGTTTGGATTAGTTGGATGGAG
GTTTCTTTGTTCGTATTCGGTTTGGTAGCACGAGCCGTGCGCGAACACTA
CCTGAGGGGTCAAGGGGATTTTTGAAGGTGTTTTCGGATTTCGGTGTGGC
ACGAGCCGTTCGCGAACGCCACACCTGTGGTGGTTGCTTTCGCACTCGGT
GTGGCACATGGGGGGGGCTTGAAAGGCGTTTCGTTTTTGGGTGTGGCACC
AGCACTTCCACGTGGGTTTCTTGAAGGCGTTTTCGTACTGGGTGTAGTAG
CACCACCACTTGGCGAAGGCGAAGTCCACGTGAGTGCCCTGGGGGCTTGC
TTTTTTTTGTCTCGTTTTTCGGTCGTGTGCTTTGTGTTCGTCCTGGTACG
CACACCTCTCGTTGTGGTTGGCGTGTTGGCCGGGGTCGACACACCGGAGG
AAGCCGGGGCCACACAGCACCCTTCATTTTGTTTTTGCCGGGAAAATGTT
TTGGTGGGGGGAGGGGGCTCACCACACTTCAGCCTGTGGTTGTGGTTGCT
CCTTTATAAGTACGTGTACTGTAGCGTCACACTCCGGCCGATGGTTTGTG
GTTGCTGCTGTAGTACGTACGTATAACATCAGACTCCAGGTTCTGATCGT
GGTTGCTGCTTTAGGACGGCGGTGGTCTGTGTGCGACTGCAAACCATAGA
GACGCGTCTGAACGCCATGGCCTGGGACCAGGGATGGCGGGAAAAACTAG
GCTATGTGTGCCCATGTGTGTTTAGCCGAGATCTACGTGCCAGCTCCGTG
GGCCTGCGCGAGCACGTGCTCTACCGAGGGCGACTGAGTACCCCCCCATC
GGTCGGTCCCAACGGATGCCAGGTCAATTTTCTAACGACTACATGTACGG
CATGCGTTTACATGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGACGGCACACCCGCCCGTATGAGTACATCCCTTCCAATC
GGTGATCAGTCCAGTGGGAAAAATGCTTCGTTCTCTCGAGGACGCGTGGT
CAATGGTCTAACCGCTAAGGCATGCAAAAAAAAGAGTACGCCCCCCCCCA
ACTTACGCGTCTTATTTTCTCTCTCCCGAAAACCGCCGCGAAATCGTGCC
GACAGATGCGCGGAGTGTCATTCGGCGTTTCGGCCCGTACTTCAGCGGCG
AAGGCACCACTGTCGCAACTGCGGTCGCCTCGTGTGCACGACATGCGCGT
TGCGCTTCTGGCCCAAGCACATGCTCCCGCACTCGTACAGGATAAGC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8052:2432..6878-

>mRNA_E_fasciculatus_S2_contig8052.16215.1 ID=mRNA_E_fasciculatus_S2_contig8052.16215.1|Name=mRNA_E_fasciculatus_S2_contig8052.16215.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1608bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8052:2432..6878- (Ectocarpus fasciculatus EfasUO2)
GATCTTGGCTACGTGCCGTACGACAGTGCGGCCGTGCGGAGCGCCACGGA
CACCGGCGGTGGTGACGCCGGTACCGGTACCGGCGGTTGGACTGACAGCA
GTCCCGCTGGCAGCTCCGTTTCCGGTGGCGGTGGCGGCGGTGGCGGCGGC
GGCTACGGGTCGTCGTCCGCCGGGGGGGCGTCGGCGGCGGTAGCGAGGAG
GAAAGGGTTCGGCCGCTTCAAGGTGTTCGGAGCGATGAAGAGCCTTTTGC
GTCCACAGGCAGACGTGGGGTCCACTAAGAACGGCGGCGGCGGCGGTAAC
TCTTCCACCGAGCGAGGCACTCCGACCCCTCCCTTCGACATCAGCCCGGC
CCCCTCCTTCTCCCCTACAAACCCCGTTGGGGTAACGGTCGTTGCCAGCG
GCGGCGGCGGGGGCGCGGGGGGGGGGCGAACGTCGACCCAAGCCGCGGCC
CTAGCAGCGCTCCTTTCGGGAGAACACGAAGGGCTGTCCCGGGAAGAGAA
GGTGGGCGGCGAGTACCAGGGCGAGGAGGAAAAGAGCTGCCGGCCGAGCT
GGCTGGAGGGGCGGGAAGAGGAGGATACGGAGGAGAAGAGCTGCCGGCCT
AGCTGGCTGGAGGGACGGGGAGAGGAGGAGGATGCGAGGTGGTTGGGGGG
AGGGCGGGAGTGCAAGCAGCCGGACGAAGGCGTGGAAGAATCCAAGTCTT
GTTCTTTCCTTCTCCCTCGAGCCCCGGGGGGCACCGCCGAACGGACGGCA
CCCCCCCCTGCCAGCACCAACGGCAACCCCGCTCGCCAGCTTCCGGAGGG
CCGAGCTCCACCTCCGTCGCAGTTGCTGGCTGGGGGTAGTAGCGGCAGCC
CCGGTTCTCAAGCGATGGCCGCGGCGATGACGGCGGCGGCGGCAGCGGCG
GCGGCGACGGAGGGGGAGGCGGCGACGTCAGCGGCAAGGCAGCGGGGGAA
GGGGTGGCGGACGAAGATCAAGCGCCGAAGTCGCCGGCGAGATCGAGGAC
CTCAGGGAGGGATCGCTGCTGCCGGAGGAGCCGAAGCCGAAGCCGCTGAC
TCCCAAGCCCCCTCGCCGAGTGTAAGCCCCGCCGCCGCCGGGGGCGGTGA
GCTTGCGGCGGAAGCGGCGGCACCGGTAGCGGTGACGTCGCCTGGCCGTA
CCCCCGGTGTGGCGGGGGGAGCAGGCGAGAGGCCGTCGCAGGGGGAGGAT
GCCGGGGCTAGGGGAGAAGAGGGGGCGGTGACGGGCTTGACGGAGATGTC
GCGGACGGCGCAACCGGTGCGCGAGCTCACTCCGCACCTGGTGGAGGAGT
TGGACGGGGCCGGGGGCGGTTTCACCCTCACGGTGTTCAAGTACAACAAG
CAGGACCAAGTGCCTAGCCCCCTGGTGTGCGGGAAGTTCGCCACGTCGTA
CGAGGCCGACAGAGCCGCGGAGGCGTTTTCGTCTCCCGTGTGGCACGAAC
CCACCGCAAACTCCACATGCGCGGAGTGTCATTCGGCGTTTCGGCCCGTA
CTTCAGCGGCGAAGGCACCACTGTCGCAACTGCGGTCGCCTCGTGTGCAC
GACATGCGCGTTGCGCTTCTGGCCCAAGCACATGCTCCCGCACTCGTACA
GGATAAGC
back to top