mRNA_E_fasciculatus_S2_contig8046.16210.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8046.16210.1
Unique NamemRNA_E_fasciculatus_S2_contig8046.16210.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8046.16210.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP1_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 2.510e-37
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 1
Query:    1 MAFAGEVGCGLDVDVPAVAGGEAGVLDALFSEEVGFVVEVSEARLAEVTEAYKAAGINAVDIGKVTDDGKVSIKVGGEEGIE 246
            MAFAGEVGCGL+VDVP VAGGE GVLDALFSEEVGFVVEVSE RL+EV EAYK AGINAVDIG+VTDDGKVSIKVGGEEGIE
Sbjct: 1014 MAFAGEVGCGLEVDVPVVAGGEGGVLDALFSEEVGFVVEVSEERLSEVMEAYKVAGINAVDIGRVTDDGKVSIKVGGEEGIE 1095          
BLAST of mRNA_E_fasciculatus_S2_contig8046.16210.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S8_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.150e-31
Identity = 65/73 (89.04%), Postives = 69/73 (94.52%), Query Frame = 1
Query:    1 MAFAGEVGCGLDVDVPAVAGGEAGVLDALFSEEVGFVVEVSEARLAEVTEAYKAAGINAVDIGKVTDDGKVSI 219
            MAFAGEVGCGL+VDVPAVAGGE GVLDALFSEEVGFVVEVSE RL+EV EAYK AGINAVDIG+VTDDGKV+I
Sbjct:  514 MAFAGEVGCGLEVDVPAVAGGEGGVLDALFSEEVGFVVEVSEERLSEVMEAYKTAGINAVDIGRVTDDGKVTI 586          
BLAST of mRNA_E_fasciculatus_S2_contig8046.16210.1 vs.
Match: phosphoribosylformylglycinamidine (synthase n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0006D8FAD8)

HSP 1 Score: 63.2 bits (152), Expect = 9.420e-10
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 MAFAGEVGCGLDVDVPAVAGGEAGVLDALFSEEVGFVVEVSEARLAEVTEAYKAAGINAVDIGKVTDDGK---VSIKVGGEE 237
            MAFAG   CG++VD+P   GG+A VL+ LF+EE+G V+EV EA    V +AY++ G+  + IG+   +G    V+++V G+E
Sbjct:  662 MAFAGN--CGIEVDLP---GGQASVLEVLFAEELGLVLEVPEAAAGMVRDAYRSGGVECLRIGRTVGEGPESTVTVRVKGQE 738          
BLAST of mRNA_E_fasciculatus_S2_contig8046.16210.1 vs.
Match: phosphoribosylformylglycinamidine (synthase n=1 Tax=Desulfosediminicola flagellatus TaxID=2569541 RepID=UPI0010AB7A42)

HSP 1 Score: 62.8 bits (151), Expect = 1.290e-9
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    1 MAFAGEVGCGLDVDVPAVAGGEAGVLDALFSEEVGFVVEVSEARLAEVTEAYKAAGINAVDIGKVTDDGKVSIKVGGEEGIE 246
            MAFAG   CGLD+ +     G+  V+D LFSEEVG VVE +EA LA V +  K+AGI    IGK T D +V +   GE  ++
Sbjct:  869 MAFAGN--CGLDISLK----GDDSVVDTLFSEEVGMVVECTEANLAAVQQLLKSAGITNSVIGKTTTDKQVKVSFNGESVLD 944          
BLAST of mRNA_E_fasciculatus_S2_contig8046.16210.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S5E9_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 2.420e-9
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    1 MAFAGEVGCGLDVDVPAV---AGGEAGVLDALFSEEVGFVVEVSEARLAEVTEAYKAAGINAVDIGKVTDDGKVSIKVGGEEGI 243
            MAFAG   CGL  D+P     A G+ G    L++EE+G V+EVS+A  A + +AYK  G+ A  IGK T   +V +KVGG   I
Sbjct:  985 MAFAGN--CGLSADLPPASNAADGKWGAFAPLYAEELGLVIEVSQADAAAIVDAYKQKGVAAAVIGKTTAAKQVEVKVGGAAAI 1066          
BLAST of mRNA_E_fasciculatus_S2_contig8046.16210.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=5 Tax=Ixodidae TaxID=6939 RepID=A0A023GP70_AMBTT)

HSP 1 Score: 61.6 bits (148), Expect = 3.310e-9
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    1 MAFAGEVGCGLDVDVPAVAGGEAGVLDALFSEEVGFVVEVSEARLAEVTEAYKAAGINAVDIGKVTDDG---KVSIKVGGEEGI 243
            MAFAG   CGLDV+VP   GG   VL+ALF EE+G+++E S A    + EAY+ AG++ V IG     G   KVS+KV G + I
Sbjct:  915 MAFAGN--CGLDVNVP--MGGAGTVLEALFHEEIGWLLEASPANEKHILEAYQKAGVHCVPIGHSKVFGPQSKVSVKVNGTQVI 994          
BLAST of mRNA_E_fasciculatus_S2_contig8046.16210.1 vs.
Match: phosphoribosylformylglycinamidine (synthase isoform X1 n=3 Tax=Polypterus senegalus TaxID=55291 RepID=UPI001965F54D)

HSP 1 Score: 59.3 bits (142), Expect = 2.150e-8
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 MAFAGEVGCGLDVDVPAVAGGEAGVLDALFSEEVGFVVEVSEARLAEVTEAYKAAGINAVDIGKVTDDG 207
            MAFAG   CG++V++P     ++GVL+ LFSEE G V+EV EA  A+VTE Y +AG+  + IG+    G
Sbjct:  927 MAFAGN--CGIEVELPL---SQSGVLEVLFSEEPGLVLEVQEAHQAQVTEGYHSAGLTCLTIGRTCGSG 990          
BLAST of mRNA_E_fasciculatus_S2_contig8046.16210.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NXQ7_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 2.160e-8
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 MAFAGEVGCGLDVDVP-----AVAGGEAGVLDALFSEEVGFVVEVSEARLAEVTEAYKAAGINAVDIGKVTDDGKVSIKVGGEEGI 243
            MAFAG   CG+ VD+P       AG EA  L ALF+EE+G V+EVSE   +  T  +  +G+ A  IG+ T DG+  I+VGG+  +
Sbjct:  992 MAFAGN--CGISVDLPLPEGPVAAGQEA--LAALFAEELGLVLEVSEEDASLATSLFNQSGVRASVIGRTTPDGRCDIRVGGKPAV 1073          
BLAST of mRNA_E_fasciculatus_S2_contig8046.16210.1 vs.
Match: Phosphoribosylformylglycinamidine (synthase n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8AVF5_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 4.020e-8
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 MAFAGEVGCGLDVDVPAVAGGEAGVLDALFSEEVGFVVEVSEARLAEVTEAYKAAGINAVDIGKVTDDGKVSIKVGGEEGIE 246
            MAFAG VG  +D++       +  +L ALF+EE+G+VV+V++A++A+VT AY+ AG+  VD+G V  D  + I+  G   ++
Sbjct:  894 MAFAGRVGWDIDIE-------DENLLAALFAEELGWVVQVADAQVAQVTAAYEDAGVRVVDLGAVRADEWLCIRHRGSLAVD 968          
BLAST of mRNA_E_fasciculatus_S2_contig8046.16210.1 vs.
Match: LOW (QUALITY PROTEIN: phosphoribosylformylglycinamidine synthase-like n=2 Tax=Rhipicephalus TaxID=34630 RepID=UPI0018938757)

HSP 1 Score: 58.2 bits (139), Expect = 5.500e-8
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    1 MAFAGEVGCGLDVDVPAVAGGEAGVLDALFSEEVGFVVEVSEARLAEVTEAYKAAGINAVDIGKVTDDG---KVSIKVGGEEGI 243
            MAFAG   CGL+V+VP   GG   VL+ALF EEVG+++E   A    + EAY+  G+  V IG     G   K+S+KV G E I
Sbjct:  915 MAFAGN--CGLEVNVP--TGGAGNVLEALFHEEVGWLLETDPANEKRIVEAYQKVGVYCVPIGHSKVFGPQAKISVKVDGTEVI 994          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8046.16210.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Phosphoribosylformylglycinamidine2.510e-3790.24synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Uncharacterized1.150e-3189.04protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
phosphoribosylformylglycinamidine9.420e-1043.90synthase n=1 Tax=Latimeria chalumnae TaxID=7897 Re... [more]
phosphoribosylformylglycinamidine1.290e-947.56synthase n=1 Tax=Desulfosediminicola flagellatus T... [more]
Phosphoribosylformylglycinamidine2.420e-945.24synthase n=1 Tax=Chlamydomonas leiostraca TaxID=10... [more]
Phosphoribosylformylglycinamidine3.310e-948.81synthase n=5 Tax=Ixodidae TaxID=6939 RepID=A0A023G... [more]
phosphoribosylformylglycinamidine2.150e-847.83synthase isoform X1 n=3 Tax=Polypterus senegalus T... [more]
Phosphoribosylformylglycinamidine2.160e-844.19synthase n=1 Tax=Raphidocelis subcapitata TaxID=30... [more]
Phosphoribosylformylglycinamidine4.020e-840.24synthase n=3 Tax=Gammaproteobacteria bacterium Tax... [more]
LOW5.500e-846.43QUALITY PROTEIN: phosphoribosylformylglycinamidine... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8046contigE_fasciculatus_S2_contig8046:5032..5702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score142.9
Seed ortholog evalue6.7e-32
Seed eggNOG ortholog2880.D8LIP1
Model size247
KEGG rclassRC00010,RC01160
KEGG koko:K01952
KEGG ReactionR04463
KEGG Pathwayko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
KEGG ModuleM00048
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009507,GO:0009532,GO:0009536,GO:0009555,GO:0009570,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0055046,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons3
EggNOG free text desc.phosphoribosylformylglycinamidine synthase activity
EggNOG OGsCOG0046@1,KOG1907@2759
EC6.3.5.3
Cds size246
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842466.229709-CDS-E_fasciculatus_S2_contig8046:5031..51301696842466.229709-CDS-E_fasciculatus_S2_contig8046:5031..5130Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8046 5032..5130 +
1696842466.243578-CDS-E_fasciculatus_S2_contig8046:5365..54761696842466.243578-CDS-E_fasciculatus_S2_contig8046:5365..5476Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8046 5366..5476 +
1696842466.2553513-CDS-E_fasciculatus_S2_contig8046:5666..57021696842466.2553513-CDS-E_fasciculatus_S2_contig8046:5666..5702Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8046 5667..5702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8046.16210.1prot_E_fasciculatus_S2_contig8046.16210.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8046 5032..5702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8046.16210.1

>prot_E_fasciculatus_S2_contig8046.16210.1 ID=prot_E_fasciculatus_S2_contig8046.16210.1|Name=mRNA_E_fasciculatus_S2_contig8046.16210.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=82bp
MAFAGEVGCGLDVDVPAVAGGEAGVLDALFSEEVGFVVEVSEARLAEVTE
AYKAAGINAVDIGKVTDDGKVSIKVGGEEGIE
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mRNA from alignment at E_fasciculatus_S2_contig8046:5032..5702+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8046.16210.1 ID=mRNA_E_fasciculatus_S2_contig8046.16210.1|Name=mRNA_E_fasciculatus_S2_contig8046.16210.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=671bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8046:5032..5702+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCTTTGCCGGGGAGGTCGGGTGCGGCCTTGACGTCGACGTGCCCGC CGTTGCCGGCGGCGAGGCTGGGGTGCTGGACGCGCTCTTCAGCGAGGAGG TGGGCCATATGCAGCCCCTCCTCCTTCTCTTGCTCGTGTTTTTGGTGGGG TCGTCGTCGTCGTCGTCGTCGTCGTCGTGTTGGTTGTTGTTGTTGTTGTT GTTGTTGTTGTTGTTGCGCTTGTTTGCGTCTCACTTTTGAACCTCTGAGA CAGATGGGTACGTACGGCATGTGAACCTGATTTTTTGGCGTTTTGATACC CTGCTACTGCTTCTTTCGCAAAATGTTATTTAAGGTGGGATTCGTGGTGG AGGTGTCCGAGGCGCGCCTGGCGGAGGTGACGGAGGCCTACAAGGCCGCC GGGATCAACGCCGTCGACATCGGCAAGGTCACCGACGACGGGAAGGTGAA GATGTGGTACCTACCTCTGGATTTCTTGGTGTGGCGGGGCGTGGGGTGAT GTCCTGGGGCCATGACGTGGTGCGACGTGGCGTGATGCTCTCTCGCTGGC TTGCTTGCTTGCCCTCTTTCTTCTTGTCAGTGTCAAAGGTCTCGTCTCTT GCTTGCTTCTTTTGTCTTCTTGTCTCGTGTCAAAGGTGTCGATCAAGGTT GGAGGAGAGGAGGGCATCGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8046:5032..5702+

>mRNA_E_fasciculatus_S2_contig8046.16210.1 ID=mRNA_E_fasciculatus_S2_contig8046.16210.1|Name=mRNA_E_fasciculatus_S2_contig8046.16210.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=246bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8046:5032..5702+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCTTTGCCGGGGAGGTCGGGTGCGGCCTTGACGTCGACGTGCCCGC
CGTTGCCGGCGGCGAGGCTGGGGTGCTGGACGCGCTCTTCAGCGAGGAGG
TGGGATTCGTGGTGGAGGTGTCCGAGGCGCGCCTGGCGGAGGTGACGGAG
GCCTACAAGGCCGCCGGGATCAACGCCGTCGACATCGGCAAGGTCACCGA
CGACGGGAAGGTGTCGATCAAGGTTGGAGGAGAGGAGGGCATCGAG
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