mRNA_E_fasciculatus_S2_contig8042.16206.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8042.16206.1
Unique NamemRNA_E_fasciculatus_S2_contig8042.16206.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8042.16206.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR96_ECTSI)

HSP 1 Score: 400 bits (1029), Expect = 3.260e-136
Identity = 197/203 (97.04%), Postives = 201/203 (99.01%), Query Frame = 3 
Query:   75 MMAKMANVALVALTLAAGGLAEESRSLASGVWGAWKSERVKSKYFSELMADGDTVELLTHGPFTISAACGTLGGEAEVRLLLTVTADSDADEWVYGYPDFLPQDYYNSCVGTTAAGTVSDTCIVWGTVSGSGFPDDAGAYTSLSGYYVSFGGPGTIGFNKEALSNEEYLTYANGFTAEEVAAFPNDCAISGELTYNRASGDDP 683
            MMAKMANVALVALTLAAGGLAEESRSLASGVWGAWKSERVKSKYFSEL+ADGDTVELLTHGPFTISAACGTLGGEAEVRLLLTVTADSDADEWVYGYPDFLPQDYYNSCVGTTAAGTVSDTC+VWGTVSGSGFPDDAGAYTSLSGYYVSFGGP TIGFNKEALSN +YLTYANGFTAE+VAAFPNDCAISGELTYNRASGDDP
Sbjct:    1 MMAKMANVALVALTLAAGGLAEESRSLASGVWGAWKSERVKSKYFSELLADGDTVELLTHGPFTISAACGTLGGEAEVRLLLTVTADSDADEWVYGYPDFLPQDYYNSCVGTTAAGTVSDTCVVWGTVSGSGFPDDAGAYTSLSGYYVSFGGPSTIGFNKEALSNVQYLTYANGFTAEDVAAFPNDCAISGELTYNRASGDDP 203
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BLAST of mRNA_E_fasciculatus_S2_contig8042.16206.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL7_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 1.460e-98
Identity = 144/153 (94.12%), Postives = 150/153 (98.04%), Query Frame = 3 
Query:  204 YFSELMADGDTVELLTHGPFTISAACGTLGGEAEVRLLLTVTADSDADEWVYGYPDFLPQDYYNSCVGTTAAGTVSDTCIVWGTVSGSGFPDDAGAYTSLSGYYVSFGGPGTIGFNKEALSNEEYLTYANGFTAEEVAAFPNDCAISGELTYN 662
            YFSEL+ADGDTVELLT+GPFTISAACGTLGGEAEVRLLLTVTADSDADEWVYGYPDFLPQDYYNSCVGTTAAGTVSDTCIVWGTVSG+G P+DAGAYTSLSGYYVSFGGP TIGFNKEA+SNE YLTY+NGFTAEEVAAFPNDCAISGELTYN
Sbjct:    2 YFSELLADGDTVELLTNGPFTISAACGTLGGEAEVRLLLTVTADSDADEWVYGYPDFLPQDYYNSCVGTTAAGTVSDTCIVWGTVSGNGTPEDAGAYTSLSGYYVSFGGPSTIGFNKEAMSNEAYLTYSNGFTAEEVAAFPNDCAISGELTYN 154
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8042.16206.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA8_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 4.420e-66
Identity = 104/112 (92.86%), Postives = 106/112 (94.64%), Query Frame = 3 
Query:  345 DEWVYGYPDFLPQDYYNSCVGTTAAGTVSDTCIVWGTVSGSGFPDDAGAYTSLSGYYVSFGGPGTIGFNKEALSNEEYLTYANGFTAEEVAAFPNDCAISGELTYNRASGDD 680
            DEWVYGYPDFLPQDYYNSCVGTTAAGTVS T I+WGTVSGSG P+DAGAYTSLSGYYVSFGGP TIGFNKEALSNE  LTYANGFTAEEVAAFPNDCAISGELTYNRASGDD
Sbjct:   38 DEWVYGYPDFLPQDYYNSCVGTTAAGTVSGTGIIWGTVSGSGTPEDAGAYTSLSGYYVSFGGPSTIGFNKEALSNEACLTYANGFTAEEVAAFPNDCAISGELTYNRASGDD 149
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8042.16206.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized3.260e-13697.04protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.460e-9894.12protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.420e-6692.86protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8042contigE_fasciculatus_S2_contig8042:1618..6718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1528
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_003350.1
Cds size612
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8042.16206.1prot_E_fasciculatus_S2_contig8042.16206.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8042 1692..5876 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842465.8978457-UTR-E_fasciculatus_S2_contig8042:1617..16911696842465.8978457-UTR-E_fasciculatus_S2_contig8042:1617..1691Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8042 1618..1691 +
1696842465.9652078-UTR-E_fasciculatus_S2_contig8042:5876..67181696842465.9652078-UTR-E_fasciculatus_S2_contig8042:5876..6718Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8042 5877..6718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842465.9097223-CDS-E_fasciculatus_S2_contig8042:1691..18141696842465.9097223-CDS-E_fasciculatus_S2_contig8042:1691..1814Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8042 1692..1814 +
1696842465.92345-CDS-E_fasciculatus_S2_contig8042:2973..30811696842465.92345-CDS-E_fasciculatus_S2_contig8042:2973..3081Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8042 2974..3081 +
1696842465.9339101-CDS-E_fasciculatus_S2_contig8042:4205..44081696842465.9339101-CDS-E_fasciculatus_S2_contig8042:4205..4408Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8042 4206..4408 +
1696842465.9438984-CDS-E_fasciculatus_S2_contig8042:5141..52271696842465.9438984-CDS-E_fasciculatus_S2_contig8042:5141..5227Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8042 5142..5227 +
1696842465.9540648-CDS-E_fasciculatus_S2_contig8042:5784..58761696842465.9540648-CDS-E_fasciculatus_S2_contig8042:5784..5876Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8042 5785..5876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8042.16206.1

>prot_E_fasciculatus_S2_contig8042.16206.1 ID=prot_E_fasciculatus_S2_contig8042.16206.1|Name=mRNA_E_fasciculatus_S2_contig8042.16206.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=204bp
MMAKMANVALVALTLAAGGLAEESRSLASGVWGAWKSERVKSKYFSELMA
DGDTVELLTHGPFTISAACGTLGGEAEVRLLLTVTADSDADEWVYGYPDF
LPQDYYNSCVGTTAAGTVSDTCIVWGTVSGSGFPDDAGAYTSLSGYYVSF
GGPGTIGFNKEALSNEEYLTYANGFTAEEVAAFPNDCAISGELTYNRASG
DDP*
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mRNA from alignment at E_fasciculatus_S2_contig8042:1618..6718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8042.16206.1 ID=mRNA_E_fasciculatus_S2_contig8042.16206.1|Name=mRNA_E_fasciculatus_S2_contig8042.16206.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5101bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8042:1618..6718+ (Ectocarpus fasciculatus EfasUO2)
ACACTCTCTTCGTGGACCTCTCTCTTTCTCGTACAATCTCTTCCACAACC
TACACCGTCCGTACTACACTCATCATGATGGCGAAGATGGCGAATGTCGC
CCTCGTGGCGCTCACTCTGGCGGCGGGCGGACTTGCGGAGGAGTCTAGGT
CTCTCGCATCGGGAGTGTGGGGTGCCTGGAAGTCCGAGAGGGTCAAGGTG
TGTCATCACTCATGCCAGGGACGGTTTGGGAACTGGGAGCTTTGAGGTTT
GAACAGCAGGAAGAGTGTGGGCTACAATGTAAGCTGTCTACACTGCCGCC
GTGAACCGTGAACCCTCCCGCGCAAATGCTAAGAGTCAACTCTCTCACCC
TTGGAGTCGAGAGGGCGGGCTTGCCTCTCAGCCTACAATCTTTCTGTTCC
GAATGCAACAGCGGCTCTCTCGCGTGCGGGAAAACAAAGTAGACGCTGCC
GAGACTGGCATCCTCCAGAACTACGGGAAAGGATATAGTCAAGGACAAAA
TATCCACACGAGTCGACGTACAGCAGTAGTACCATGCTGCTGTACCACGT
GGCGTCGAAATATTGTTGTATCGCTCATGCTCGACATCCCACACATTATC
CCGGGGCCGTCCGTCCTCCGGCATGTTTAGATGTGTAGATGTTTAGATTT
TGGCGGGACAAGGCAACCGAAATGTGGGCGATGGCATCACAGGTGAAGAG
ACACGCCACTCAAGAGGCAACTCGCGCTTGTTGGGTGGCCGTGTGCATTT
GGTCACGCTTGTGTGTCGGACACTGTAGGAGGGGAACCACGTTTTTCCGC
CGGTGTTGTTGTCGAATCCGTTCCAAGCATTCTCGACGGCGTAGTCCGCT
CCACACCTCACTCGACCTCGAGAAATTACAGAGGCCCGATAACTACTTGA
ACATGATGAGACCGCAGTCCCACGAATTTTGCCGAAAAAGGAACAGGAAA
CAACAACCCTCTCGCAGCCAAGTCTCGAACATTACTGCTGAGCGGAACGA
ACGGCAGTGGCAAACGCGATGTTATAATCCTTTCTGCCAGGCCGTTTCAC
CGGGGAGCTAGCTCCCTATCAACAACCAGACACACAGCTTTTACAGTAAG
TCCCGTACGAAATATATGTGCGAAATGTAGTCCGCAGGGGTGACGGCAAA
AAGTCTGGACTCCAGACTGCATGCAACATGTCGTGCGAGTTGCCCCTCTA
CCCCCACCGCTGACACGCTATCTGTCCCCGCCCCTGTTTATGTTCCTCCT
GGCCTCCTTCCTTTCTCCCTAATTCTTGTGTACGATGCCGCCATCGGTCT
GCCTATGTTTTACGTTTCGTCACCCTCGAAACAACGCACCACGCAACAAC
TTATAGTCTAAGTACTTCTCGGAGCTCATGGCGGACGGCGACACCGTGGA
GCTCCTCACCCACGGACCTTTCACGATCAGTGCTGCGTGTGGCACCCTTG
GAGGCGAAGCGGAAGTGAGTACCTTGACGGTCGTGTTTGTTGCTGAACTT
CCGTCCTTTTTGTCACTGTCTTGGCCATCGTGGTTGTTGTTGCTGCCAAG
GGGAGTAGATGAGTTGGTTGTTGGTTGTGTATAGCGTGTGTTGTCATCCT
GACGTTTTTCGACAACGTGCAGAAGTACGCCCCGGTATCTATTGTGGAGG
TGGATAGAGTTGTTGATTGTCTGTGCCTGTTGAAATTCCTCTTGCACCCT
GCTGCTGGTGCCTGTGGACACAAGCATGATGGTATGATGAATAGCGCTGT
GTACTCCATACGGTTTGTTAATCATTCCCGTTATTTCTTCCTCGCTAGCC
AAGTCCGGCATGTGTTACTGCAAAACATCCTCCCCCAATCCTCTGTTTTT
GACCAGAATTCATGCTGGATGAGGCCCGGTATGAAGGAAGGTCCGAAAAA
CTGAACTAAAACCCAAATTCAAGCCCTGATTGGTCGGAGCCCAAAGATGG
CCATATCTGGGTTTGCGGCGAGCTCACCTTTTTTTTCTGGCTTGTACAAA
AAAACATTGCGTGGAGGAATTACCATACTCCGTATATTCATGTAGTCACA
ACATCAACAATCCGAATCAAACTATGTTTTATTTCCGGCCAACACAGCAG
TCTTGATTTTGGTCTTTTGATGTTGCAATATGATGTTGAACCCTAACCCT
AGCCCTAACCCTAGACTAGTAGACTATTTTTTCACGGAATTATCAACCTC
AAGCACGTGGACTATGCAAGTGCCCCCTTCCTCAGTTTTTCCCGTCAAGA
GGTGCCGGTCACGCGCTCACGTACGCCATGCTTCTCCACCCAACCGATAG
TTGCGGCCCGCGTCCGAACGCCATTTTGGGGTGAAGCGTCAGGTGCTTGT
TTCATGGCTACTGCTGTAGCATCGAGAATAGGCCACCGCCGTGTAGGTTC
CACCGCTGAGGTGTTGTGTGTGTGTGTGTTGAACCATTTTGCCATGTGTT
TCGTGACAATCTGAGCATCTTTGTGATGAACAAATATTAATATTTCTTGC
TTGCGGGTCCGAAATATACCTCTGTACCAAAACCTCTCGAGTCATCCTGC
CATCGTTTCGTTGTTCACGGTCTCACCCACGCTCTCAGGTACGGCTGCTC
CTGACCGTTACCGCGGACAGCGACGCCGACGAGTGGGTGTACGGATACCC
GGATTTCCTTCCCCAGGACTACTACAACTCGTGCGTCGGCACCACGGCCG
CAGGCACGGTGAGCGACACGTGCATCGTGTGGGGCACTGTGTCCGGCAGT
GGTTTCCCGGACGACGCTGGGGCGTACACCTCCCTCTCCGGGTGAGTCGG
CGATGCCTATTTTTTTCGGCATGCAATGTCGTCGATATGGTTTGGTTGCC
TCTTGCTTATAATGCTCCGTGCACCTCTCCCCCGTGTTGAGGTTGGCTGT
ATGGGTCCGGTGTCATATGAAAGGTGTCGCCGTTACCATGGTGTTTCTTC
ATGGATGTTATGCACCAAACCAAATTGAACGCACATGATTGGCCATCGAC
ACGTGGGATATGTGTGTGGCTGGAATGCCTGGCCATGTCTTTGCACGCTC
CCACATCACCGACGGAAATGCGGGAGCGCGGACAAGTCGTGTCATTCTAC
GCTGTAAACACGAATTATTCACTTTTTTGAGAGCAGCAACAGCCCGAGGC
CTTGACCTGATTTTCCTCAGACCGGGGGGATGGGGATATCAAGACTCGCA
CCTGACCGTGGAGCCCTCAGTCTTGGTCTTGGGTTTGTCTTCTTTTTTGT
CTTCATGTGTGCAAGTCATCCAACCTGGGATGGTTGGCCGATGTGAAACA
GTCTATAGCAGATAATTCAAGGCCGGTCTTGACTGTACCAAGTAGTCTAG
ACAAGATACCTGGAACAGGGGGCATCGTACGGACCACGCTAATCAGTAAA
GACCTTTGCACTACTCGAGAGGAGCGCAGTCGTAGCGTTGTGTTGGTAAC
TTTGAAACGTGGGCCTTTCCGTCCGGGCTCAACCACAGCATGCATTGATG
ATCGACGGGACGATGTTTGGCCAGGTACTACGTTTCCTTCGGGGGCCCTG
GCACGATCGGCTTCAACAAGGAGGCCCTTTCCAACGAGGAGTACCTCACC
TACGCTAACGGTGAGATGGCCCGACGACAAGCTTGCCCAAAACCTTATGT
GTCTCTTTTTCTGTGCGCGCACGGTTTGCGATTTTGGAACCATCGTTGAA
AGGCCCAAGGCATTCAGTTTTGTCCTTTAAGGATCGGATTCCGCTGTGTA
GGTGTTCGCTTTGTGGCTACATTCGTCGCTCCGGATTATTCAATTGTTTG
CATACGAGAGCATCTTATACGAGGGGGCTCCGATGTGAGAGGGTCGAAGT
TTGTTGTCACGACCCGTCTTGTATAGTTGGGTACCCTCTTGCTTCCGTGA
AAGAGGGGGCTCCGGTAAGAAAGGGTCAAGCGCCTTGGTCACACCATCAC
ATATTGTGTGGGAGCCACGACTGTACGTCAAATCATTAAACCCGACTTGA
GCCGGTCCCTGCCTTCCGCGACAGACAATGGGCACAGGTGGTAGGCTTGC
CTTCTTTGGCCTTGGACGCCTGCTGCATCATTCTATGGCGACTCCATTTT
TCTGACGTATCATGATGCCAATTTTGTGTTTGTTTGTCCCCGCCGCCCCG
CCGTTGCCGCCTCGTAGGATTCACCGCCGAAGAAGTGGCGGCTTTCCCCA
ACGACTGCGCGATTTCCGGCGAGCTGACATACAACCGGGCATCCGGCGAT
GACCCGTGATTTGAGACTTATTGGTTGACCTAGAACTGTTCGGGGGTGGA
TGCCACGTGGATCACGCAGCGACTTGGGTGGCCGTTAAGCTCGATACATC
TCTCCTCGCGAGTTGATTATGTCGATGATGCTCTTCGACGGCTTGGCGCC
ATTGGCGATAGGTGGTTGTCGGGTTTCCTTGGTCCCAGGACGCATCTCTC
CTGCCCAGACGATAGGGTGTTGCCACAGGTCGAATAGCGATGGTTAGTAA
AGCGTGCGGCCATTTCGGTTGATGTCACGGCCGGTGAGATTTCAGGCAAC
GACTGCCCCACCAAGTTGATTCCTTTGAATGAACATAGAACGGTCGTTGC
CGCACTACATTAGTAGATGTGCTGTTTGGTTTGGTCGTATCCTCTCACGG
GCGCGCGTGCGTGGACAACTGCTGTGTCATATGCATATTTGTGGCGGAGA
TGAAGTCCTACGGTGGTTTAGTCTAATGCGTGTGCGAGTAGACCCTCCCC
TCGCGTGGGAGGGTAAGTATGTGGGTTGAATCGTGTTTTGCACACGAAGA
TCAGGGAGCACCTGTCGGTACGTTTCGTGGCCTGAGCTCCGGGGGCTACG
CGTGTACCTTCCCTTTAAATGTATATTTTTCGCTTTGTTTGTTGAATTAA
GACCATATTTTGAGATCGACATTGAGATCATGAAGAGGATGTTCGGTGCC
TGGCATATACCGCTTGTGCTCTTGTCAGCTTGTTCGACTGCCATCGCCAC
AAACAAAATAACGCCGCGGGCTAATAGTGGTTGATGTCTTGTCGCGTGGT
TCTCTGCTTGCCCCGTGGGGTCCACTCGACAGCTTTTCACAAGTATTTCC
C
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8042:1618..6718+

>mRNA_E_fasciculatus_S2_contig8042.16206.1 ID=mRNA_E_fasciculatus_S2_contig8042.16206.1|Name=mRNA_E_fasciculatus_S2_contig8042.16206.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=612bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8042:1618..6718+ (Ectocarpus fasciculatus EfasUO2)
ATGATGGCGAAGATGGCGAATGTCGCCCTCGTGGCGCTCACTCTGGCGGC
GGGCGGACTTGCGGAGGAGTCTAGGTCTCTCGCATCGGGAGTGTGGGGTG
CCTGGAAGTCCGAGAGGGTCAAGTCTAAGTACTTCTCGGAGCTCATGGCG
GACGGCGACACCGTGGAGCTCCTCACCCACGGACCTTTCACGATCAGTGC
TGCGTGTGGCACCCTTGGAGGCGAAGCGGAAGTACGGCTGCTCCTGACCG
TTACCGCGGACAGCGACGCCGACGAGTGGGTGTACGGATACCCGGATTTC
CTTCCCCAGGACTACTACAACTCGTGCGTCGGCACCACGGCCGCAGGCAC
GGTGAGCGACACGTGCATCGTGTGGGGCACTGTGTCCGGCAGTGGTTTCC
CGGACGACGCTGGGGCGTACACCTCCCTCTCCGGGTACTACGTTTCCTTC
GGGGGCCCTGGCACGATCGGCTTCAACAAGGAGGCCCTTTCCAACGAGGA
GTACCTCACCTACGCTAACGGATTCACCGCCGAAGAAGTGGCGGCTTTCC
CCAACGACTGCGCGATTTCCGGCGAGCTGACATACAACCGGGCATCCGGC
GATGACCCGTGA
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