mRNA_E_fasciculatus_S2_contig8041.16205.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8041.16205.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 480 bits (1236), Expect = 1.100e-164 Identity = 227/248 (91.53%), Postives = 240/248 (96.77%), Query Frame = 1
Query: 1 MARTGFVALACGMLGAANALKVVTPSEGLTVIAERTYTVEWTGTSSNNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFFLLASNEAPSVGDSDGPSLEVTSPSSGDLASTCGEYTVEFDYDNGVGSSVDRFSIDLYRADGDGDCGTYVESICDKPTIGCKDSTGDYDVEIPCGTEPGEYKIRVARFEDDSLYSCSDAFTIEDG 744
M RTGFVALACGMLGAANALKV TPS+GLTVIA+RTYTVEWTGTSS+NRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEF+LLAS+EAPSVGD DGP+LEVTSP+SGDLA+TCGEYTVEFDYDNGVGSSVDRF+IDLYRADG+GDCGTYV+SICDKPTIGCKDS GDYDVEIPC T+ GEYKIRVARFEDDSLYSCS FTIE+G
Sbjct: 1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEG 248
BLAST of mRNA_E_fasciculatus_S2_contig8041.16205.1 vs.
Match: Imm (downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 411 bits (1057), Expect = 5.260e-138 Identity = 198/235 (84.26%), Postives = 214/235 (91.06%), Query Frame = 1
Query: 1 MARTGFVALACGMLGAANALKVVTPSEGLTVIAERTYTVEWTGTSSNNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFFLLASNEAPSVGDSDGPSLEVTSPSSGDLASTCGEYTVEFDYDNGVGSSVDRFSIDLYRADGDGDCGTYVESICDKPTIGCKDST----GDYDVEIPCGTEPGEYKIRVARF 693
MARTGFVALACGMLGAANALKV TPS+GLTVIA+RTYTVEWTGTSS+NRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPM GTSGSGYKVRVWDIHDEEDADCSDEF+L+AS+EAPSVGD DGP+LEVTSP+SGDLA+TCGEYTVEFDYDNGVGS VDRF+IDLYRADGDGDCGTYV+SICDKPTIGCKDS G + V+ G G + + V R+
Sbjct: 2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLVLRY 236
BLAST of mRNA_E_fasciculatus_S2_contig8041.16205.1 vs.
Match: EsV-1-163 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 388 bits (997), Expect = 9.310e-129 Identity = 191/253 (75.49%), Postives = 206/253 (81.42%), Query Frame = 1
Query: 1 MARTGFVALACGMLGAANALKVVTPSEGLTVIAERTYTVEWTGTSSNNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFFLLASNEAPSVGDSDGPSLEVTSPSSGDLASTCGEYTVEFDYDNGVGSSVDRFSIDLYRADGDGDCGTYVESICDKPTIGCKDSTGDYDVEIPCGTEPGEYKIRVARFEDDSLYSCSDAFTIEDGGNDSS 759
MARTGFVALAC MLGAANAL+VVTPS L V+A+RTYTVEWTG S RFEIDLY+CGSMCMED CGDWVTALCPYGE+GCPDNEGDYDIVMPEPM G S SGYKVRV D+ DE+ DCSD F+L+AS +AP G G L VTSP+ GD A EYTVEFDYDNGVGS VDRFSIDLY ADGDGDCGTYV SICDKP+IGCKDS GDYDVEIP TE G+YKIRV RFED+ LY CS FTI GG+D S
Sbjct: 1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM-GGDDES 251
BLAST of mRNA_E_fasciculatus_S2_contig8041.16205.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 375 bits (963), Expect = 1.310e-123 Identity = 181/253 (71.54%), Postives = 207/253 (81.82%), Query Frame = 1
Query: 1 MARTGFVALACGMLGAANALKVVTPSEGLTVIAERTYTVEWTGTSSNNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFFLLASNEAPSVGDSDGPSLEVTSPSSGDLASTCGEYTVEFDYDNGVGSSVDRFSIDLYRADGDGDCGTYVESICDKPTIGCKDSTGDYDVEIPCGTEPGEYKIRVARFEDDSLYSCSDAFTIEDGGNDSS 759
M RTGFVALACGMLG A+AL+VVTP+ G V++ R YTVEW+GT SN RFEIDLYYC SMCMED+CG+WVTALCPYGEDGCPDNEGDYDIVMPEPM GTSGSGYKVRV D+ DE+ +DCSDEF+L+A +APS D+ GP + VTSPS+GD A EYTVEFDYDNG+GSSV RF+IDLY A G GDCGT++ ++CDKPTIGCKDS GDYDVEIP E G Y IRV FED+S+Y CSD F I G +DSS
Sbjct: 2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEIL-GADDSS 253
BLAST of mRNA_E_fasciculatus_S2_contig8041.16205.1 vs.
Match: EsV-1-163 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 369 bits (947), Expect = 6.090e-121 Identity = 198/275 (72.00%), Postives = 220/275 (80.00%), Query Frame = 1
Query: 37 MLGAANALKVVTPSEGLTVIAERTYTVEWTGTSSNNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFFLLASNEAPSVGDSDGPSLEVTSPSSGDLASTCGEYTVEFDYDNGVGSSVDRFSIDLYRADGDGDCGTYVESICDKPTIGCKDSTGDYDVEIPCGTEPGEYKIRVARFEDDSLYSCSDAFTI---EDGGNDSSXXXXXXXXXXXXXXXXXXXXXXEDFSMSYRF 852
MLGAA+AL+VVTP+EG V+A R YTVEWTGT SNNR+EIDLYYCGSMCMED+CGDWVTALCPYGEDGCPDNEGDYDIVMPEPM GTSGSGYKVRV D+ D++ DCSDEF+L+A EAPS GD+ GP + VTSPSSGD A EYTVEFDYDNG+GSSV RF+IDLY A G GDCGT++ ++CDKPTIGCKDS GDYDVEIP E G Y IRV FEDDS+Y CSD F I +D +D XXXXXXXXXXXXXXX SMSYRF
Sbjct: 1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPDDGDLDMESEDXXXXXXXXXXXXXXXXXXSMSYRF 275
BLAST of mRNA_E_fasciculatus_S2_contig8041.16205.1 vs.
Match: Imm (upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 340 bits (872), Expect = 5.020e-110 Identity = 170/248 (68.55%), Postives = 194/248 (78.23%), Query Frame = 1
Query: 1 MARTGFVALACGMLGAANALKVVTPSEGLTVIAERTYTVEWTGTSSNNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFFLLASNEAPSVGDSDGPSLEVTSPSSGDLASTCGEYTVEFDYDNGVGSSVDRFSIDLYRADGDGDCGTYVESICDKPTIGCKDSTGDYDVEIPCGTEPGEYKIRVARFEDDSLYSCSDAFTIEDG 744
MART F ALA GMLGAANAL+VV+P+ G V+A+ YTVEWTG +S R++IDLYYCGS+CMED+CGDWVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D DE D CS +F L+AS EAP D G + VTSPS GD A GEYTVEFDYDNG+GSSV+RF+IDLY + G GDCGTYV +ICDKP+IGCKDS GDYDV IP GTE G Y IRV FEDD +Y CSD+F I G
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSG-RYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGG 245
BLAST of mRNA_E_fasciculatus_S2_contig8041.16205.1 vs.
Match: EsV-1-163 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 331 bits (848), Expect = 2.130e-106 Identity = 168/254 (66.14%), Postives = 196/254 (77.17%), Query Frame = 1
Query: 1 MARTGFVALACGMLGAANALKVVTPSEGLTVIAERTYTVEWTGTSSNNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFFLLASNEAPSVGDSDGPSLEVTSPSSGDLASTCGEYTVEFDYDNGVGSSVDRFSIDLYR-ADGDGDCGTYVESICDKPTIGCKDSTGDYDVEIPCGTEPGEYKIRVARFEDDSLYSCSDAFTIEDGGNDSS 759
MART F ALA GMLGAANAL+VV+P+ G++VIA+RTYTVEWTGTS ++RFEIDLYYCGS CMED+CGDWVTALCPYG DGCPD +GDYDIVMPEPM GTS SGYKV V D +DE CS +F L+AS +AP+ G+ G SL VTSPS GD A G YTVE+DY+NG+GSS DRF+IDLY G GDCGTYV ++CDKP+IGC DS GDYDVEIP T G Y +RV F DD ++ CS+ F I + D S
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEV-GYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMS 251
BLAST of mRNA_E_fasciculatus_S2_contig8041.16205.1 vs.
Match: GPI-anchored (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 319 bits (818), Expect = 6.610e-102 Identity = 157/246 (63.82%), Postives = 187/246 (76.02%), Query Frame = 1
Query: 1 MARTGFVALACGMLGAANALKVVTPSEGLTVIAERTYTVEWTGTSSNNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFFLLASNEAPSVGDSDGPSLEVTSPSSGDLASTCGEYTVEFDYDNGVGSSVDRFSIDLYRADGDGDCGTYVESICDKPTIGCKDSTGDYDVEIPCGTEPGEYKIRVARFEDDSLYSCSDAFTIE 738
MART F A+A GML AANAL+VV+P G++V+A+R YTVEWTGT++ RFEIDLYYC S CM+D CGDWVTALCPYG DGCPD+ GDYDI+MPEPM GTS SGYKV V + DE D CSD+F L+AS +AP G+ G SL VTSPS GD A YTVE+DY+NG GSS DRF++DLY G GDCGTYV ++CD+P+IGC DS GDYDVEIP T G Y IRV F+D+ +Y CSD F ++
Sbjct: 1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTG-RFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEM-GYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVD 243
BLAST of mRNA_E_fasciculatus_S2_contig8041.16205.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 280 bits (715), Expect = 1.480e-86 Identity = 149/253 (58.89%), Postives = 170/253 (67.19%), Query Frame = 1
Query: 1 MARTGFVALACGMLGAANALKVVTPSEGLTVIAERTYTVEWTGTSSNNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFFLLASNEAPSVGDSDGPSLEVTSPSSGDLASTCGEYTVEFDYDNGVGSSVDRFSIDLYRADGDGDCGTYVESICDKPTIGCKDSTGDYDVEIPCGTEPGEYKIRVARFEDDSLYSCSDAFTIEDGGNDSS 759
MART F ALA GMLGA NAL+V +P+ G ++A + TVEWTGTSS RF+IDLYYCGS+CMED+CGDWVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D DE D CS EF L+AS FD+DNG GSSV+RFSIDLY + G GDCGTYV SICDK +IGCKDS GDYDV IP TE G Y IRV FED ++ CSD+F I G + S
Sbjct: 1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSSG-RFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGESSMS 250
BLAST of mRNA_E_fasciculatus_S2_contig8041.16205.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE) HSP 1 Score: 275 bits (702), Expect = 2.010e-81 Identity = 132/184 (71.74%), Postives = 145/184 (78.80%), Query Frame = 1
Query: 184 MEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFFLLASNEAPSVGDSDGPSLEVTSPSSGDLASTCGEYTVEFDYDNGVGSSVDRFSIDLYRADGDGDCGTYVESICDKPTIGCKDSTGDYDVEIPCGTEPGEYKIRVARFEDDSLYSCSDAFTI 735
+ED+CG+WVTALCPYG +GCPDNEGDYDIVMPEPM GTSGSGYKVRV D+ +DADCSDEF+L+AS EAP VG D P L VTSPS+GD A GEYTVEFDYDNGVGS VDRF IDLY G GDCGT+V ++CDK IGCKDS GDYDVEIP G Y IRV RFEDD+LY CS F I
Sbjct: 12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEI 195 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8041.16205.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8041.16205.1 >prot_E_fasciculatus_S2_contig8041.16205.1 ID=prot_E_fasciculatus_S2_contig8041.16205.1|Name=mRNA_E_fasciculatus_S2_contig8041.16205.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=285bp MARTGFVALACGMLGAANALKVVTPSEGLTVIAERTYTVEWTGTSSNNRFback to top mRNA from alignment at E_fasciculatus_S2_contig8041:1751..5914- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8041.16205.1 ID=mRNA_E_fasciculatus_S2_contig8041.16205.1|Name=mRNA_E_fasciculatus_S2_contig8041.16205.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4164bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8041:1751..5914- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8041:1751..5914- >mRNA_E_fasciculatus_S2_contig8041.16205.1 ID=mRNA_E_fasciculatus_S2_contig8041.16205.1|Name=mRNA_E_fasciculatus_S2_contig8041.16205.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=855bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8041:1751..5914- (Ectocarpus fasciculatus EfasUO2)back to top |