mRNA_E_fasciculatus_S2_contig8039.16200.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8039.16200.1
Unique NamemRNA_E_fasciculatus_S2_contig8039.16200.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8039.16200.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE1_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 3.040e-39
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 GWRFPHVRLVRSEESALFDFEVRFRTASTPAGEPGLLRCLRHLRDEIVEDYPPEVLLQRPGSFGRLLSLL 210
            GWRFPHVRLVRSEESALFDFEVRFRTASTPAGE GLLRCLRHLRDEIVEDYPPEVLLQRPGSFGRLLSLL
Sbjct:  357 GWRFPHVRLVRSEESALFDFEVRFRTASTPAGETGLLRCLRHLRDEIVEDYPPEVLLQRPGSFGRLLSLL 426
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BLAST of mRNA_E_fasciculatus_S2_contig8039.16200.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G379_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 3.640e-39
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 GWRFPHVRLVRSEESALFDFEVRFRTASTPAGEPGLLRCLRHLRDEIVEDYPPEVLLQRPGSFGRLLSLL 210
            GWRFPHVRLVRSEESALFDFEVRFRTASTPAGE GLLRCLRHLRDEIVEDYPPEVLLQRPGSFGRLLSLL
Sbjct:  391 GWRFPHVRLVRSEESALFDFEVRFRTASTPAGETGLLRCLRHLRDEIVEDYPPEVLLQRPGSFGRLLSLL 460
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BLAST of mRNA_E_fasciculatus_S2_contig8039.16200.1 vs.
Match: RTTN_N (domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IYD1_PLABS)

HSP 1 Score: 55.1 bits (131), Expect = 4.150e-7
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:    1 GWRFPHVRLVRSEESALFDFEVRFRTASTPAGEPGLLRCLRHLRDEIVEDYPPEVLLQRPGSFGRLLSLL 210
            GWRFP V LVR +E  LFD  +R R+         ++  L  L ++++ D+P EV+LQRP     ++ L+
Sbjct:  187 GWRFPMVALVRHDERILFDLGLRLRSRDRSI----VVEALHTLHNDVLLDFPGEVILQRPQVLAAIVDLI 252
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BLAST of mRNA_E_fasciculatus_S2_contig8039.16200.1 vs.
Match: 3'-5' (exonuclease domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y2D1_PLABS)

HSP 1 Score: 55.1 bits (131), Expect = 4.170e-7
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:    1 GWRFPHVRLVRSEESALFDFEVRFRTASTPAGEPGLLRCLRHLRDEIVEDYPPEVLLQRPGSFGRLLSLL 210
            GWRFP V LVR +E  LFD  +R R+         ++  L  L ++++ D+P EV+LQRP     ++ L+
Sbjct: 1605 GWRFPMVALVRHDERILFDLGLRLRSRDRSI----VVEALHTLHNDVLLDFPGEVILQRPQVLAAIVDLI 1670
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BLAST of mRNA_E_fasciculatus_S2_contig8039.16200.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DTN7_HEMAN)

HSP 1 Score: 53.9 bits (128), Expect = 9.760e-7
Identity = 28/69 (40.58%), Postives = 38/69 (55.07%), Query Frame = 1 
Query:    4 WRFPHVRLVRSEESALFDFEVRFRTASTPAGEPGLLRCLRHLRDEIVEDYPPEVLLQRPGSFGRLLSLL 210
            W F  V L R ++  LF+ EV+ R   + A    +   L +LR  I+ D+PPE LLQRP     +LSLL
Sbjct:    7 WEFSAVPLTREDKQLLFEAEVKLRVTDSTA----VRGVLMYLRSGILNDFPPETLLQRPDMLRSVLSLL 71
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8039.16200.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized3.040e-3998.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.640e-3998.57protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
RTTN_N4.150e-737.14domain-containing protein n=1 Tax=Plasmodiophora b... [more]
3'-5'4.170e-737.14exonuclease domain-containing protein n=1 Tax=Plas... [more]
Hypothetical9.760e-740.58protein (Fragment) n=1 Tax=Hemiselmis andersenii T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8039contigE_fasciculatus_S2_contig8039:5095..5586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size210
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842465.2611396-CDS-E_fasciculatus_S2_contig8039:5094..51261696842465.2611396-CDS-E_fasciculatus_S2_contig8039:5094..5126Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8039 5095..5126 +
1696842465.271848-CDS-E_fasciculatus_S2_contig8039:5408..55861696842465.271848-CDS-E_fasciculatus_S2_contig8039:5408..5586Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8039 5409..5586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8039.16200.1prot_E_fasciculatus_S2_contig8039.16200.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8039 5095..5586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8039.16200.1

>prot_E_fasciculatus_S2_contig8039.16200.1 ID=prot_E_fasciculatus_S2_contig8039.16200.1|Name=mRNA_E_fasciculatus_S2_contig8039.16200.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=70bp
GWRFPHVRLVRSEESALFDFEVRFRTASTPAGEPGLLRCLRHLRDEIVED
YPPEVLLQRPGSFGRLLSLL
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mRNA from alignment at E_fasciculatus_S2_contig8039:5095..5586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8039.16200.1 ID=mRNA_E_fasciculatus_S2_contig8039.16200.1|Name=mRNA_E_fasciculatus_S2_contig8039.16200.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=492bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8039:5095..5586+ (Ectocarpus fasciculatus EfasUO2)
GGGTGGCGCTTCCCGCACGTGCGCCTGGTTAGGTGCGTGTGTATGTGTGT
TGCTGCGTGTGTGTCTTAACTGTTGGCATCGACCGCGCTATCCGCCTAGC
GAATGAAAAGGCGTCAGTCTTGTAGCGGGATTAAAAAACGTACGCACTTT
CTAATCAAAGGGCTTTCTGTGTGCGTGGGCAGCAAAGATAAAATGTGAAG
ACCAAGTGGACAATTCGGCGTAAAATCCTCGCCTTCCCCAAAGTGTTCAT
TTTTGCTCCGTTCTTCCTCGCCAACTAAGTTGTATGTTCCGTGTTTCGTG
TGTTGGGGCGACAGGTCGGAAGAGTCGGCGCTTTTCGACTTCGAGGTTCG
TTTCCGCACCGCCTCCACCCCCGCGGGCGAGCCCGGCCTGTTACGCTGCC
TGAGGCACCTTCGCGACGAGATCGTGGAGGACTATCCCCCCGAGGTACTC
CTCCAGAGGCCCGGCTCGTTCGGCCGCTTGCTGTCACTGCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8039:5095..5586+

>mRNA_E_fasciculatus_S2_contig8039.16200.1 ID=mRNA_E_fasciculatus_S2_contig8039.16200.1|Name=mRNA_E_fasciculatus_S2_contig8039.16200.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=210bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8039:5095..5586+ (Ectocarpus fasciculatus EfasUO2)
GGGTGGCGCTTCCCGCACGTGCGCCTGGTTAGGTCGGAAGAGTCGGCGCT
TTTCGACTTCGAGGTTCGTTTCCGCACCGCCTCCACCCCCGCGGGCGAGC
CCGGCCTGTTACGCTGCCTGAGGCACCTTCGCGACGAGATCGTGGAGGAC
TATCCCCCCGAGGTACTCCTCCAGAGGCCCGGCTCGTTCGGCCGCTTGCT
GTCACTGCTG
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