mRNA_E_fasciculatus_S2_contig8037.16199.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8037.16199.1
Unique NamemRNA_E_fasciculatus_S2_contig8037.16199.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8037.16199.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A2_ECTSI)

HSP 1 Score: 347 bits (891), Expect = 2.540e-118
Identity = 213/235 (90.64%), Postives = 219/235 (93.19%), Query Frame = 1 
Query:  124 RFVEELEVLRAKYGEVDQDGLIVKLLMEEFSFTTVEVTDLQTLKTRPRDKGKVYLLGETNFLQSPPSERVDYSNLKPKALEMVGDEKLNTEAREALPANTKTSKKAVELMGSTKVVTEKKALKRLGSEMSESMRVLQIKTERKEQREXXXXXXXXXXXXXXXXXXXXXXXXXDGGRAADG--QLTLSPTKSMATMRVSSPGSFASSPMARRATRLLTEVPKFITDMGGGSSKKEL 822
            RF EE+EVLRAK+GEVDQDGLIVKLLMEEFSFTTVE TDLQ LKTRPRDKGKVYLLGETNF+QSP +ERVDYSNLKPKALEMVGDEKLNTEAREALPANT+TSKKAVELMGSTKVVTEKKALKRLGSEMS+SMRVLQIKTERKE   XXXXXXXXXXXXXXXXXXX      DGGRAADG  QLTLSPTKSMATMRVSSPGSFASSPMARRATRLLTEVPKFI DMGGGSSKKEL
Sbjct:    6 RFAEEIEVLRAKHGEVDQDGLIVKLLMEEFSFTTVEATDLQALKTRPRDKGKVYLLGETNFMQSPLTERVDYSNLKPKALEMVGDEKLNTEAREALPANTRTSKKAVELMGSTKVVTEKKALKRLGSEMSDSMRVLQIKTERKEXXXXXXXXXXXXXXXXXXXXXXDKGVGADGGRAADGVTQLTLSPTKSMATMRVSSPGSFASSPMARRATRLLTEVPKFIADMGGGSSKKEL 240
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8037.16199.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.540e-11890.64protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8037contigE_fasciculatus_S2_contig8037:3482..6806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size825
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_005090.1
Cds size825
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842465.1928709-CDS-E_fasciculatus_S2_contig8037:3481..36041696842465.1928709-CDS-E_fasciculatus_S2_contig8037:3481..3604Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8037 3482..3604 +
1696842465.214868-CDS-E_fasciculatus_S2_contig8037:4831..50651696842465.214868-CDS-E_fasciculatus_S2_contig8037:4831..5065Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8037 4832..5065 +
1696842465.2281725-CDS-E_fasciculatus_S2_contig8037:6338..68061696842465.2281725-CDS-E_fasciculatus_S2_contig8037:6338..6806Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8037 6339..6806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8037.16199.1prot_E_fasciculatus_S2_contig8037.16199.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8037 3482..6806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8037.16199.1

>prot_E_fasciculatus_S2_contig8037.16199.1 ID=prot_E_fasciculatus_S2_contig8037.16199.1|Name=mRNA_E_fasciculatus_S2_contig8037.16199.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=275bp
MGAGASVADELASPRHKQSRPAGSISTTGCQYREMLDHLRNRFVEELEVL
RAKYGEVDQDGLIVKLLMEEFSFTTVEVTDLQTLKTRPRDKGKVYLLGET
NFLQSPPSERVDYSNLKPKALEMVGDEKLNTEAREALPANTKTSKKAVEL
MGSTKVVTEKKALKRLGSEMSESMRVLQIKTERKEQREEENRRNMLSASE
GGGSGGGEKGGGADGGRAADGQLTLSPTKSMATMRVSSPGSFASSPMARR
ATRLLTEVPKFITDMGGGSSKKEL*
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mRNA from alignment at E_fasciculatus_S2_contig8037:3482..6806+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8037.16199.1 ID=mRNA_E_fasciculatus_S2_contig8037.16199.1|Name=mRNA_E_fasciculatus_S2_contig8037.16199.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3325bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8037:3482..6806+ (Ectocarpus fasciculatus EfasUO2)
ATGGGGGCGGGAGCCTCTGTTGCCGATGAACTCGCTTCGCCCAGACACAA
ACAAAGTCGCCCTGCCGGGAGCATCTCCACCACAGGATGTCAGTACCGCG
AGATGCTGGACCACCTTCGAAACGTAAGCCGACAACACCCACGTAACACC
TACATACTACAGCACTGCCTGTTGAGTAGGTCCCGTTTCCAAGGGATCGG
TCTCAGTCGGGGTCTGTCGGTGTAGAAGTTCGATTCTAGGGAAGAATGTA
GAGTACATTAGTCTAGTAGCTGCTGCTATTTGTGAAGCTGGTCTTCTAGT
AGTCTAGATATTATTAGATTGCATACCTACTACAAGACTGTTTCATCATT
GATTTTCCGATCATCGTAACCTACGCAGAGCACTGGTTTGCTTAATCTGT
AGTCGAGGCAGGTTGTTTGGTATGTCTGATAAAGGCTAGTCCACTGACTA
CAGTACTCAGTCAGCGGCTGACTGAGTAGTCTAATGGACTAGCCTTTATC
AGACGCTTTATCAGCCATGGTACTCTCTTCATTAGTCTACCTTACCATGC
CAGACCACGAAATCCACACCTTGCTTGCTGCTATTGAAGTGCGATCGACT
AGACTGAGAAGACGAACCTGTCTGTGTCACTACATGCAGCATTCCGTGTA
GACGCAGTACAGCAGTCTAGCTGTTACCCCCTAGTCTAGTCTATATTTAC
CACGACGTATAGTATATGTCACAATAGAGTTGCCAGTTTCCCCATTTCGC
GCCAAAAGGAGGGCCAACACTCTTACCCTTTTGATATGGTACGTCACCAG
GGTACAGCCGTACAGAACCCGCTTCGGCATAGAGAAAAAGTCCTCCCCTT
GGGGTTGGCACTCCAGGTTCTCTTCAGCTTTTTCTGTCGTCATACTACTG
TATCCACAGCAGCAGTGCACACACATGGACTTGGGGCGCGCACCGCACGT
GACTTCTATATCCCTGCAGCATGGTGACCACGAACGAAAGCGTGTATACT
GGGAGTACTCGGCTTCCTACCACATAGATAGCGTGTACGCGGAGTATCAA
ATGTGTTACTCTTGAAACTGCCCTTTCCCGTGGTAAGGTCGTTGTAAGTA
GGTCCTGCCCCGTTCTTGGGTTGCAGGCTCCGGGTGTGCATGTGGCGAAC
AACATCAAGCTAAAAAACATCGTTTGGTCGTAATACTCTTCTTCCCGTTC
AAGTAGAACACATGTAGCGTTTTTCATCCAAGTACAGGCACTTACCTCAT
GTTGTTGATGCCTATGTCTTTTAACTATGTGCGTCCACAACACGTTTGTT
TCTTGTACACGTACTATACATACGACCGACCATGATGTGGCGACGAAAAG
CGATTCGTGGAAGAGCTCGAGGTGCTCCGCGCGAAGTACGGCGAGGTGGA
CCAGGACGGCCTCATCGTGAAGCTTCTCATGGAGGAGTTCTCCTTCACCA
CCGTGGAGGTCACCGACCTGCAAACCCTCAAGACGCGGCCGCGGGACAAA
GGGAAGGTGTACCTCCTTGGAGAGACGAACTTCCTGCAAAGCCCCCCCTC
GGAGCGAGTGGACTATTCCAACCTTAAGCCCAAGGTGCAAGGGGCGGGCA
TCATTGTTGGCGGGGGGGGGGGTTGGGGGGGCGTGCTCATGTTATGCAAG
CCTTAGTTGCTAAATAGACCATTGACCACGCGTCCTCGAAAGGACGGAGG
GTTGTTCCCACAGGAAGGACCGATCACCGATCACCCGTCGTTTCCTCTCT
ACTTTGTCAAAGGTGCTCCAAAACGGTTTCCCTATTTTCTGTCATATCTG
TATCACTTCCCCGTTCTTGCAGCCCACTTCATACCAGTATTTATAGCTAT
CGTCTTCTCCTGGCTGTTCCATGCCTCAAACATCTCTCTGTAACTTCCTC
CAGCTCAGTCAAGCACATTTCTCGCTCCTTTTCGTAAAACGGGCATCCTG
CTGCAACTACATGACCCGGCCTTCGCACTCAGAGTTGACATTCTCAATTA
TTGGAACTTGGTGTCGTCTTCATGGTCAAAAACGTTCCCCCTAATTTTCA
TCCACGTTCTCGAAGGCCTTTGTTCCCAGTCCCTGCCTCCATGGGCCCAT
GTAGGTACACCTTGAACCCTATTCCTTCTTTCACCATTCCGCACACATCT
AATAGACCCTCCTTAGGTTGATTCCCGTTCTTCTCTCTCGGCAGAAACAA
CAGATAGATATGTATCTCCGTTTTGAACCCCTCTAGGCTTTCCGTTTCCA
ACTTATCAACTTCGTCAATTTCGAACCCCTGCCACACTTCCGTAACCCAC
TCCGTGGGTCGTCTTCTTGTTGACTTGTTTTCCAACTCAACCTCCCAACC
TATTTTCGGCAACCTCTCCTCTCCCATATTGTGCATTCGGCACTGCCACT
ATTGCTTTCTTGCGGAGGGAGTGTACTCATAATAGCCGTGCATCCCGCAG
TCGTTTGACCATTGACCTCGCATCCCTACAAAGCCGGGACGGGGCACGCC
GGGTTCTCACCTTTCTTGGGGGCGGGGGTCATTACGCATCGAGGGTGAGG
AGCCTGGTTCTGCTAACAGCCGCAAGCCGCACACGAAACGCTCAGAAATG
GGCAAAACTCTGCAGCAAGCAATCGTGGCAAGGAAGAGGAGGAGGAGGAT
TGGAAAACACTTCCAATACACGACCCCTTCGCTCTGAAAATTGCACTTGA
CAACACCACGAACGGTGTCTCGATACTTCGAAGTGTGATTATTTATCACC
TTACTTTTCAACCTGAACAACGTGCTTTGGAGTGCAGCCGAACGTTGAGC
TGCTGCATACTACGTCTGTCTCAGCCCATTTCCTCCCCCGAAACCGGCCC
CCAACAGGCGTTAGAAATGGTGGGCGATGAGAAACTGAATACGGAGGCGA
GGGAAGCTCTACCGGCCAACACCAAGACGAGCAAGAAGGCCGTGGAGCTC
ATGGGCTCAACCAAGGTGGTCACCGAGAAGAAGGCGCTCAAGCGCCTCGG
GAGCGAGATGAGCGAGAGCATGAGGGTGTTGCAGATCAAGACCGAGCGTA
AGGAGCAGAGGGAAGAGGAGAACCGCCGAAATATGCTCAGCGCAAGCGAG
GGGGGGGGGAGCGGCGGCGGGGAGAAGGGGGGGGGGGCGGACGGCGGACG
GGCTGCTGATGGGCAGTTGACGTTAAGTCCGACGAAGTCGATGGCCACCA
TGAGAGTTAGCTCGCCGGGATCGTTCGCATCTTCGCCCATGGCGAGACGA
GCGACTCGGCTGCTCACGGAGGTGCCCAAGTTTATCACCGACATGGGAGG
AGGTTCCTCAAAAAAAGAGCTGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8037:3482..6806+

>mRNA_E_fasciculatus_S2_contig8037.16199.1 ID=mRNA_E_fasciculatus_S2_contig8037.16199.1|Name=mRNA_E_fasciculatus_S2_contig8037.16199.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=825bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8037:3482..6806+ (Ectocarpus fasciculatus EfasUO2)
ATGGGGGCGGGAGCCTCTGTTGCCGATGAACTCGCTTCGCCCAGACACAA
ACAAAGTCGCCCTGCCGGGAGCATCTCCACCACAGGATGTCAGTACCGCG
AGATGCTGGACCACCTTCGAAACCGATTCGTGGAAGAGCTCGAGGTGCTC
CGCGCGAAGTACGGCGAGGTGGACCAGGACGGCCTCATCGTGAAGCTTCT
CATGGAGGAGTTCTCCTTCACCACCGTGGAGGTCACCGACCTGCAAACCC
TCAAGACGCGGCCGCGGGACAAAGGGAAGGTGTACCTCCTTGGAGAGACG
AACTTCCTGCAAAGCCCCCCCTCGGAGCGAGTGGACTATTCCAACCTTAA
GCCCAAGGCGTTAGAAATGGTGGGCGATGAGAAACTGAATACGGAGGCGA
GGGAAGCTCTACCGGCCAACACCAAGACGAGCAAGAAGGCCGTGGAGCTC
ATGGGCTCAACCAAGGTGGTCACCGAGAAGAAGGCGCTCAAGCGCCTCGG
GAGCGAGATGAGCGAGAGCATGAGGGTGTTGCAGATCAAGACCGAGCGTA
AGGAGCAGAGGGAAGAGGAGAACCGCCGAAATATGCTCAGCGCAAGCGAG
GGGGGGGGGAGCGGCGGCGGGGAGAAGGGGGGGGGGGCGGACGGCGGACG
GGCTGCTGATGGGCAGTTGACGTTAAGTCCGACGAAGTCGATGGCCACCA
TGAGAGTTAGCTCGCCGGGATCGTTCGCATCTTCGCCCATGGCGAGACGA
GCGACTCGGCTGCTCACGGAGGTGCCCAAGTTTATCACCGACATGGGAGG
AGGTTCCTCAAAAAAAGAGCTGTGA
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