mRNA_E_fasciculatus_S2_contig8034.16198.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8034.16198.1
Unique NamemRNA_E_fasciculatus_S2_contig8034.16198.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8034.16198.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 4.720e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    2 FAESLSVTNVLAESNTQVITIKAKVYKPETFALVDPPEVMRLEPCLVGEPLSARPPGEARVLLRNTTARRRLFVIE 229
            FAESLSVTNVLAESNTQVITIKAKVYKPETFALVDPPEVMRLEPCLVGEPLSARPPGEARVLLRNTTARRRLFVIE
Sbjct: 1410 FAESLSVTNVLAESNTQVITIKAKVYKPETFALVDPPEVMRLEPCLVGEPLSARPPGEARVLLRNTTARRRLFVIE 1485
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BLAST of mRNA_E_fasciculatus_S2_contig8034.16198.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.300e-19
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 2 
Query:    2 FAESLSVTNVLAESNTQVITIKAKVYKPETFALVDPPEVMRLEPCLVGEPLSARPPGEARVLLRNTTARRRLFVIE 229
            FAE+LSVTNV  ESNTQVITIKAKVYKPETFALV PP  +   PCLVGE  +AR     +V +RNTT+R+R FV+E
Sbjct:    9 FAEALSVTNVQDESNTQVITIKAKVYKPETFALVSPPTEVSFGPCLVGE--AAR--TLVKVCVRNTTSRKRQFVVE 80
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8034.16198.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.720e-39100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.300e-1967.11protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8034contigE_fasciculatus_S2_contig8034:542..1571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size231
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842465.1091154-CDS-E_fasciculatus_S2_contig8034:541..7201696842465.1091154-CDS-E_fasciculatus_S2_contig8034:541..720Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8034 542..720 -
1696842465.1195972-CDS-E_fasciculatus_S2_contig8034:1519..15711696842465.1195972-CDS-E_fasciculatus_S2_contig8034:1519..1571Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8034 1520..1571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8034.16198.1prot_E_fasciculatus_S2_contig8034.16198.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8034 542..1571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8034.16198.1

>prot_E_fasciculatus_S2_contig8034.16198.1 ID=prot_E_fasciculatus_S2_contig8034.16198.1|Name=mRNA_E_fasciculatus_S2_contig8034.16198.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=77bp
VRGVAVCDQRPGREQHAGDHDQGQGVQAGDVRPRRPAGGHAARALPRRGA
AVGTTPRGSEGVAPQHHGSKKALRYRG
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mRNA from alignment at E_fasciculatus_S2_contig8034:542..1571-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8034.16198.1 ID=mRNA_E_fasciculatus_S2_contig8034.16198.1|Name=mRNA_E_fasciculatus_S2_contig8034.16198.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1030bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8034:542..1571- (Ectocarpus fasciculatus EfasUO2)
GTTCGCGGAGTCGCTGTCTGTGACCAACGTCCTGGCCGAGAGCAACACGC
AGGTACGGTACAGCAGTAGTGCACGTGGTCGTTGTGGGCGGCAGCGGGCA
CCGCTGCTGCCGCTCCCGCGTGTCGATGCCTCGTGTCGTGTATCTCCGTA
CTCTTGCCGTTTGGCCCGTCTTCTGAGTCGTACCTACCTCCGTAGTTCGA
GCTTGTGTCGTACCTGCATCTTTTTGACAATGGCTGCTCTAGTCGGATGC
ATCGTAGATGGTGGTCCGTGTTGCACAAGCCCGCATGAACAATGCAAGGC
CGTCCGCCCTGTGTAAGGCCGGCGAAACCGCGTGGCACACAAGGATGGAA
TCTTCACATTGTTCTCAATCTCTAACTAGCGACGGGTGCCCGTTATGCGG
CCGGCCAAATGCCGAGGCACTATGGGGCCTTCGACAGGGACGACTTCTGC
TGTACGTCCGTCCAAATTTTTTTAAGTCAGCACCCATGGTTCAGTGTTGA
GCGAGAGGGCGCTTCATGACAACCGCTTCCGTGGAACTTTCTCGGTTTCT
GGCCTGGCGCGTGGAACGGAAGATGGAATGAAGAAGTCTCTTATCAGTAT
TGTCTCTTATCAGTATTGTTCCTTCAACCTTGCACGTTGTGTTGCTCTCA
ATCGATCAAGCACCAAACCACCGCCGCTCCCACCACAACACACGCGCACG
CATACCCACACCCACAAACGCCAACAACGACGACTACGACGTCGACGACG
ACGAAAACAAAAACAACAAACAGCAACAACATTACCTACAACATGAACAT
CATCAACAACAACACAACACACATCCATAACATCATCAACAACAACGACA
GGTGATCACGATCAAGGCCAAGGTGTACAAGCCGGAGACGTTCGCCCTCG
TCGACCCGCCGGAGGTCATGCGGCTCGAGCCTTGCCTCGTCGGGGAGCCG
CTGTCGGCACGACCCCCCGGGGAAGCGAGGGTGTTGCTCCGCAACACCAC
GGCTCGAAGAAGGCTCTTCGTTATCGAGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8034:542..1571-

>mRNA_E_fasciculatus_S2_contig8034.16198.1 ID=mRNA_E_fasciculatus_S2_contig8034.16198.1|Name=mRNA_E_fasciculatus_S2_contig8034.16198.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=231bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8034:542..1571- (Ectocarpus fasciculatus EfasUO2)
GTTCGCGGAGTCGCTGTCTGTGACCAACGTCCTGGCCGAGAGCAACACGC
AGGTGATCACGATCAAGGCCAAGGTGTACAAGCCGGAGACGTTCGCCCTC
GTCGACCCGCCGGAGGTCATGCGGCTCGAGCCTTGCCTCGTCGGGGAGCC
GCTGTCGGCACGACCCCCCGGGGAAGCGAGGGTGTTGCTCCGCAACACCA
CGGCTCGAAGAAGGCTCTTCGTTATCGAGGG
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