mRNA_E_fasciculatus_S2_contig8027.16192.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8027.16192.1
Unique NamemRNA_E_fasciculatus_S2_contig8027.16192.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8027.16192.1 vs.
Match: GpcrRhopsn4 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX0_ECTSI)

HSP 1 Score: 288 bits (738), Expect = 1.120e-94
Identity = 133/142 (93.66%), Postives = 138/142 (97.18%), Query Frame = 1 
Query:    1 CCCWCSEAKLWRGSARLSASKPWVALTSFAFEIGTGRIDVTFPQGSLDGVPEGTKMIAILDEDWPDFLAEEMCMVRNRLNRWLVPLEPEATRDGDAVFGTTIRQNVRPHNWYLVVSHCNARGKPPKRTRIEVIASFTQQGGS 426
            CCCWCSEAKLWRGSARLSASKPW+ALTSFAF+IGTGRIDVTFPQGSL GVPEGTKMIAILDEDWPDFLAEE CMVR+RLNRWLVPLEPEAT+DGDAVFGTTIRQNVRPHNWYLVVSHCNARG PPKRTRIE+ ASFTQQGGS
Sbjct:   19 CCCWCSEAKLWRGSARLSASKPWMALTSFAFDIGTGRIDVTFPQGSLGGVPEGTKMIAILDEDWPDFLAEERCMVRDRLNRWLVPLEPEATKDGDAVFGTTIRQNVRPHNWYLVVSHCNARGSPPKRTRIEMSASFTQQGGS 160
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8027.16192.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
GpcrRhopsn41.120e-9493.66domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8027contigE_fasciculatus_S2_contig8027:3191..6910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score287.7
Seed ortholog evalue2.9e-75
Seed eggNOG ortholog2880.D8LKX0
Preferred nameGPR180
Model size427
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.response to pheromone
EggNOG OGsKOG4290@1,KOG4290@2759
Ec32 ortholog descriptionIntimal thickness related receptor, IRP
Ec32 orthologEc-11_005870.1
Cds size426
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842464.571967-CDS-E_fasciculatus_S2_contig8027:3190..33011696842464.571967-CDS-E_fasciculatus_S2_contig8027:3190..3301Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8027 3191..3301 +
1696842464.5877905-CDS-E_fasciculatus_S2_contig8027:3876..40771696842464.5877905-CDS-E_fasciculatus_S2_contig8027:3876..4077Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8027 3877..4077 +
1696842464.6039605-CDS-E_fasciculatus_S2_contig8027:5853..59341696842464.6039605-CDS-E_fasciculatus_S2_contig8027:5853..5934Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8027 5854..5934 +
1696842464.6144967-CDS-E_fasciculatus_S2_contig8027:6876..69091696842464.6144967-CDS-E_fasciculatus_S2_contig8027:6876..6909Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8027 6877..6909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8027.16192.1prot_E_fasciculatus_S2_contig8027.16192.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8027 3191..6909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8027.16192.1

>prot_E_fasciculatus_S2_contig8027.16192.1 ID=prot_E_fasciculatus_S2_contig8027.16192.1|Name=mRNA_E_fasciculatus_S2_contig8027.16192.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=142bp
CCCWCSEAKLWRGSARLSASKPWVALTSFAFEIGTGRIDVTFPQGSLDGV
PEGTKMIAILDEDWPDFLAEEMCMVRNRLNRWLVPLEPEATRDGDAVFGT
TIRQNVRPHNWYLVVSHCNARGKPPKRTRIEVIASFTQQGGS
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mRNA from alignment at E_fasciculatus_S2_contig8027:3191..6910+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8027.16192.1 ID=mRNA_E_fasciculatus_S2_contig8027.16192.1|Name=mRNA_E_fasciculatus_S2_contig8027.16192.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3720bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8027:3191..6910+ (Ectocarpus fasciculatus EfasUO2)
TGCTGCTGCTGGTGCTCCGAGGCGAAGTTATGGAGAGGGAGCGCAAGATT
GTCGGCGTCAAAGCCTTGGGTGGCTCTAACTTCGTTCGCTTTCGAGATTG
GCACCGGCAGGGTGAGTGAGACACACAACCATGTTTTGGCTACTTGTTAG
CTCTTTCCAGCAGGAGCAGGACACCACCCCCCGCCCTCTGCTGCCTCGTA
ACGCTGCCAGCACGATGCTACTCAGGGTTCTCCTACTTCGGGCACAGCGA
AAACATGCAAGGTGGTAGCGTGTAGACCTTGGGACGCCTAAGGTCAATCA
CCAATATGGCCCGCAAACGTTATAATTCCGTTTCCCGAGGGACGTAGGCT
AGGCGCGCTGGAATGCCAAACGGCTCCTTTCGTCGATTACACGCCTGTTT
CCTGTTTCCCGAGGCGCAATTAGCTACAGCAGTCCTTACAACTTGCAGTA
CTTCCCCGCGGGTGTGCCCTTGGTTTGGTACTATGTACTATGCATATGTG
ATGTCGAGGTACCGCTGTAGAGGGAGGGGTGTATTCGTTCCATTCACACT
CGTGGGTAAGAGCCAATACCGACCTGCTGCTGATGTCGTGTGGCATCCGC
ACCAATGCTCTGCATGGGAGGAGGGGGGGGCAACCAAGGACAGCAGTCCC
TCTTACCAGCAAGGCTCGTCATGTGTTACTTCGCAGATCGATGTGACCTT
CCCGCAAGGGAGTCTGGACGGCGTGCCGGAGGGCACTAAGATGATCGCTA
TCCTAGACGAGGATTGGCCTGATTTCCTGGCGGAGGAGATGTGCATGGTG
CGGAATCGGCTCAATCGCTGGCTAGTACCGCTGGAACCGGAAGCAACCAG
GGACGGCGATGCCGTTTTTGGAACCACGATCAGACAGGTATGCATACAGC
AGCAATCTCTAGAGTGAGCTGTCTATGATCAGCACAAGCTAGACACAAGA
GACAAGGTCACAGGAGCAGGAGCAGGAGTTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCGGCAGTCGTTCCAATATCTGCGGTCT
GATTTCAGCTTTTGGCTCCTTTGTGGATCACTTTTCACTTTTCACAGCAG
TGCGGCGGTTCAGCAGTAGCTCTTGTGAACGCTGCCTTCGTCACGGCCCA
GTACTTGCCAGCATCCGTACCGGTCCAATTAAAGCAGACGCCTTCCGCGG
TGACAGACCAACCAGGCACACAAACCAATCGAATAATCAAAGGGAGATGA
AGAGGACTCGGGTCGGTCAGCCCAACCGCGATAATTCGATACAGAACAAA
AATCGAAAGAAAGACGTGGATAGAGATGGATTCGCGGTGTTTCCAATAAG
AAAAAAACACATACAACAACAGTCCCGCGCCACCAGTGAAGTGTCGGGCA
AAGGAAATGAACAACAGCACAGCACACATCGCTCGGCACACGATTTAGAA
AAAATAAAACCAACCAAAGTATTCGCATGATCGCCGCCACCATCTACTCA
GGACGGTGATCTTGAGGTGGCTACCGCCTACCGCACGCTTCCTCTTGCTG
CTGTGCGCCCGTGACGTGAGCATTCGGACGTTCCAAACACTTTGAACTTT
ATGTTTGCATTCAGGCATCCAGACCTTCTCTCTAGTTGGAGCATTAGGGT
CGTTGCTGGGAACGAGTGACTCCTCTATTTAGTAAATGTTTTTTCTCCCT
GGAACATCAATCTCAGCAACAACCAACCACAGCCAATGCGAATATCATTT
TCATCGTACAAGGCCAAACACTTAAAAGATCATGACAACACTTAATAACG
TAGATCCAGTTGATTCTATGTGTGCATCTCACACTGGATTGCGCTCTTCC
GCAGCCAGCAAGCGCCGGATCAGTGAACGTGCAAGTTCTCTGTTCCTGTG
TATTTCGGCTGAACACGAGAAACAGGCCTGTCTTTCAATGTCTATGCAGT
GTACCCAAGACGTAGCCAGAGAACCACAGGGTGGATACTGCTGTACGCAC
GCGAACAGATTTGTACAAGGCCTTATTTTGCTGCGGGATGACTTTACCTC
GAGCCCTGACAGCGCAGCGTAATTTCCCCTCATTTTCTTCCCGGAAATCC
TACTTCTGTCGATTGGTCTTCCCACCGCCCTCTGTCTGTCTCTCTCAGCC
TCTCTCTCTATATATATATATTAAATATATCTCTCTTTCTCTCTCTGTCT
CTCGTCCTCTCTCTGTCTCTCTCTATGCCTCTGTTTCTTCACGCACATCC
ACACTCAGCGTGTCCTTTGCCTTGGAGAACTCGATTTGGGCGTTGGCGCC
AAGCATCAGCAATTTTACTTGAACCTCTCAGCCCTTCTCACAAGCTCAAG
CAGCGCAGCTCCGAATTATCTCTTTCCGCCTGTCTGCCTGACATCTCAAA
CACTCGCGTTCAGCAGCGCAATGTAAGGCGGTGGCCCGAAGCGCCAGAAA
CCCTTCGTACACATACACATGTTGGAGGCTCAGAGATCCAGCACCGATAT
TTCAATATTTCTCCATTCCATATGTACCGGCCATGGTTGGCGTGATGCTA
GAGACCTTGGTTGCTTCGCAGAGGTCTCCGAGTTTGGACCAACGTTCATT
ACAACCTTAAGCAGCACAAATACTGCCGCCCCCTCGTGTTCCACGCCGCT
CGTGCTTGCGCAGAATGTCCGGCCGCACAACTGGTACCTGGTGGTGTCTC
ACTGCAATGCACGAGGCAAACCTCCAAAGCGCACGAGAATAGAGGTGCGA
TTTTTTCTTTTAGATGTTGATACGTGGTATGGCAAGAGTCGTGAAGCGAG
ATTGAGTACGTGACGAGTAAGGCGCCGTTCACGCTCAGTGCCCAGCGCAA
GGTGGTTTGCGTAGTCTAACCCTATGTCGCTTTTTCCTGTGCGGTTTGAG
CCGTGTCGATAGTGGCAAACCTTGCTCTCTAGGTGGATTATGAGAGTCTG
TGTGCCGTAGAATGATACCGAGATCAGGAATCCTTGGTTGCAATCGACTG
CGGCAACAGCTGTGAAGTATGATTTGTCGTTTAGTTGGAAGGACGCAATA
TTTGTCAGGTATGTTCGTTTTTTCGTTTCCCCCCCCGGAAGGAGTGGATG
AATGATATTTAGTTTTGGTTTTGGTTGATGCAGCAGGAGGTGTATTTTGG
CGAGTATCAACGGCAGCCTTCTGTCGGTCCACCTGGGAATAATTTAACAC
ATGCGGGATATGGCCCAGCATGACGTGCCGCCTGGCCAACTTACACGCTG
GATATGGCCAAAGACATTACTACTGCTATTTCGCATGTGAAATCTATTCT
GCGTGTGCGATTGTGGCCCCCTTGCTTTCTCTGCGATGCTGTACACCCCC
CAAGGTGGCATCTTACTGCTGTGTACGTGTGCGTGTTTTGCGTTTGTCGT
GTTGTGTGTCGCCCCGATAGCAGTATTCTCGTATTCTCGATGCGATCATG
GTCTGGCACCTTCAGCTTTCACCTCCGTTATACGCGGTTGCATTCCACAC
TCCTTTTTTGTTGTCTCTCACTACACACTGCGGCATGATCTGGTCGGCAC
CGCCTGCTCCCTCCGATCCCTCTTGTTTAACTAAACTCAAAGCATACCAT
ACTTTTACGTACGCGCATTGATAAGCTGCATCATTTTGCTCACCAGGCGC
CGTTCCCTCCGTATGCACACCCCTAACGTGGCGCAGGTGATAGCCTCGTT
TACACAGCAGGGGGGCTCCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8027:3191..6910+

>mRNA_E_fasciculatus_S2_contig8027.16192.1 ID=mRNA_E_fasciculatus_S2_contig8027.16192.1|Name=mRNA_E_fasciculatus_S2_contig8027.16192.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=426bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8027:3191..6910+ (Ectocarpus fasciculatus EfasUO2)
TGCTGCTGCTGGTGCTCCGAGGCGAAGTTATGGAGAGGGAGCGCAAGATT
GTCGGCGTCAAAGCCTTGGGTGGCTCTAACTTCGTTCGCTTTCGAGATTG
GCACCGGCAGGATCGATGTGACCTTCCCGCAAGGGAGTCTGGACGGCGTG
CCGGAGGGCACTAAGATGATCGCTATCCTAGACGAGGATTGGCCTGATTT
CCTGGCGGAGGAGATGTGCATGGTGCGGAATCGGCTCAATCGCTGGCTAG
TACCGCTGGAACCGGAAGCAACCAGGGACGGCGATGCCGTTTTTGGAACC
ACGATCAGACAGAATGTCCGGCCGCACAACTGGTACCTGGTGGTGTCTCA
CTGCAATGCACGAGGCAAACCTCCAAAGCGCACGAGAATAGAGGTGATAG
CCTCGTTTACACAGCAGGGGGGCTCC
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