|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 463 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-05_003790.1 |
| Cds size | 402 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842464.235656-CDS-E_fasciculatus_S2_contig802:18414..18453 | 1696842464.235656-CDS-E_fasciculatus_S2_contig802:18414..18453 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig802 18415..18453 + |
| 1696842464.24596-CDS-E_fasciculatus_S2_contig802:19845..19981 | 1696842464.24596-CDS-E_fasciculatus_S2_contig802:19845..19981 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig802 19846..19981 + |
| 1696842464.2558823-CDS-E_fasciculatus_S2_contig802:20058..20285 | 1696842464.2558823-CDS-E_fasciculatus_S2_contig802:20058..20285 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig802 20059..20285 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842464.2655141-UTR-E_fasciculatus_S2_contig802:20285..20346 | 1696842464.2655141-UTR-E_fasciculatus_S2_contig802:20285..20346 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig802 20286..20346 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig802.16187.1 >prot_E_fasciculatus_S2_contig802.16187.1 ID=prot_E_fasciculatus_S2_contig802.16187.1|Name=mRNA_E_fasciculatus_S2_contig802.16187.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=134bp
MSEAGGRSELDQQQARIHPTVVKKLLQLHWNKDPAADGAKINPDAAVLTA
EYLRLFVIARVAHDFVYRQALGKTPMRWCLTVNFRSPPVRRRGERGIQPL
HLSRTRPSLLVSTRTPLSTGRGQKRVRLPHGNT* back to topmRNA from alignment at E_fasciculatus_S2_contig802:18415..20346+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig802.16187.1 ID=mRNA_E_fasciculatus_S2_contig802.16187.1|Name=mRNA_E_fasciculatus_S2_contig802.16187.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1932bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig802:18415..20346+ (Ectocarpus fasciculatus EfasUO2)
ATGTCGGAAGCCGGAGGAAGATCAGAGTTGGACCAGCAGGTATGCCTCAA
CCCACCTGCGCCATGTAGAGCACATAGCGCGGCATCGTACACCAAGGTTG
GGATGATTCCTCCGCCGCAGGTCTCCCTTTGTACTATAATACTGCTGCAC
ACATCAACCGGCGAAACACTATGTTGTCCGGGAAGCACACACGTACACGA
GAGAATGTCGATCTTTGCATGTACCTATTGCTAACTTCCCTCCTCTCTGG
CGGCATGATCGTCAAATATGGCGGCTATCCACAAATTCAACATCTCCGTC
GTCGAGCAAGAGACGCTGCGGTGCTATACAGTACGCCGCACATCGCCTCT
GGATGATATCGCCAACAGCGCGGAACTGAACCCTGTTTCGCTTGTAATAT
CGTAATGGCCACAAACTCTCACCGATCCTTCAGCACGCGGGTCGATTTGC
ATCACATTGCCGACATTGGAGCCTAACGGCTGCATCACTGGATTGGCTGG
ACTGCGTCCGGCGCGGAACGGTGGTTTTGACCCCCATAGCATCCAATCAG
TTGACGTCAGAACTTTTCAACCACCTGGGGATTTGTGGCAAACCGATTTT
TTTCTCTATATCCGCTGGCTCTCGCGTAGACTATTTGTCCGAATTCCGAG
GGTGAGAAAGAACCTTCCCCGGGTTTCCACAGCAGTCTCTGTCCTGCCGT
GGAGCTTCTTCAGAGCACGGTCTCCTTTAATGTGTCGACCACGCGCACTA
TTCGGCGAGAAGAGCATCCCTCGAATGCCTTTTGATGTGCGTGTTCGTGT
GTGCAGCTGTATTTTCTCTCTAGAAACGTGACGCCACTGATTTAGGGCTG
GGCGAAGTCAAACCGGCCATGACATTGGTTCCTCCCACCGAACCCTGGTC
CCAGGGGTGTTCAGTATTCCGGGAAACAATCCTCCTGGGAATCCCCAGTA
TACCTAGCCGCCGCACCTGTGTGCGGCGGCACACGTTGGGAAGCACGGCA
GCTTTTTTAGCGTGCTTGTGGCATCCTGGTGTGCAAATGTGTCACAGTCA
CAGCACATGTTCCTGAGCATGCATGGCAATGTGTTGACCTTACAGACACG
GTCTGGTGGCGAAACAGCGTCCCCGCTCTCTAGATTTTGTTCGGCGACTT
CCTGTGCCAAGGGCACCACGGACGCAAATTCACAATTCGCGCCTAGAAAA
GGCCGCAACTTTTCAATCCACCCCGCGAAAAGGGAGTGTACGGTTTTGAA
ACTTGCTGCCACACTGCCGGTGGCCACCAATGGGTAGCCATCAACCATCT
TGTGGGTACATGTCGGCAAGAGCGAGGCCAATTGACTTATGCTCGACCAG
ATTGCTGGAACAGCTAGTGAATCGGCTGTTCTTCGGCTCCTGCCCTGTTT
CGTGTTTTTTATCTCGTGCTATTTGCGACAGCAAGCGAGGATACACCCAA
CTGTGGTGAAAAAGCTGCTACAGCTGCACTGGAACAAGGACCCGGCCGCC
GATGGGGCCAAGATCAACCCGGATGCTGCCGTGCTCACGGCCGAGTACCT
ACGTCTGTTCGTGATCGGTGAGGGATCGTCATTAGATCTCAGGGTTGCAT
GATTTCTCTGATGAAGCGCACCAAAAACATGCGGGCACAAGCAGCACGTG
TTGCACATGACTTCGTCTATCGCCAAGCGTTGGGCAAGACGCCGATGCGG
TGGTGCCTCACGGTCAACTTCCGCTCTCCGCCTGTTCGTCGTCGGGGCGA
ACGCGGCATTCAACCGTTACACCTATCGCGCACACGGCCGTCATTGCTCG
TATCAACGAGAACCCCGTTGTCCACTGGACGCGGCCAAAAACGTGTGCGT
CTGCCCCACGGCAACACGTGACCCTGGGCTCGGCGGCACGAACGGACCTG
GGCAGCGCCAGCAGATAAATCACCACGCGCGC back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig802:18415..20346+ >mRNA_E_fasciculatus_S2_contig802.16187.1 ID=mRNA_E_fasciculatus_S2_contig802.16187.1|Name=mRNA_E_fasciculatus_S2_contig802.16187.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=402bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig802:18415..20346+ (Ectocarpus fasciculatus EfasUO2)
ATGTCGGAAGCCGGAGGAAGATCAGAGTTGGACCAGCAGCAAGCGAGGAT
ACACCCAACTGTGGTGAAAAAGCTGCTACAGCTGCACTGGAACAAGGACC
CGGCCGCCGATGGGGCCAAGATCAACCCGGATGCTGCCGTGCTCACGGCC
GAGTACCTACGTCTGTTCGTGATCGCACGTGTTGCACATGACTTCGTCTA
TCGCCAAGCGTTGGGCAAGACGCCGATGCGGTGGTGCCTCACGGTCAACT
TCCGCTCTCCGCCTGTTCGTCGTCGGGGCGAACGCGGCATTCAACCGTTA
CACCTATCGCGCACACGGCCGTCATTGCTCGTATCAACGAGAACCCCGTT
GTCCACTGGACGCGGCCAAAAACGTGTGCGTCTGCCCCACGGCAACACGT
GA back to top
|