mRNA_E_fasciculatus_S2_contig8004.16174.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8004.16174.1
Unique NamemRNA_E_fasciculatus_S2_contig8004.16174.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8004.16174.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG6_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 2.860e-81
Identity = 208/288 (72.22%), Postives = 216/288 (75.00%), Query Frame = 1 
Query:    1 MPQGGHSKRPRERNSALYTAVCRGDAGLVAKLLKPKRDGQRDGNAAXXXXXXXXXXXPAALDLEELSRGSTALHAACGTGQTRIVAMLIEAGADPNTVRSKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPTLGKLLRPIHYASFSGHVNILELLVEAAAAAAACDDGERARKLLLQLSDARGHQPLLCAVRDGARSRDTVLALLGMGAEVDGGSPPXXXXXXXXXXLMLAAMKVLPAVAKALVEAGANVNAR 864
            M QGGHSKRPRE NSALYTAVCRGDA LVA+LLKPK  GQRDG+AA           PAALDLEELSRGSTALHA CGTGQ+RIVAMLIEAGADPNTVR KDG               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                      ILELLVE AAAAA CDDG  ARKLLLQLSDARGHQPL CAVRDGAR+RDTVLALLGMGAEVDGG+ P          LMLAA+KVLPA+AK L+EAGANVNAR
Sbjct:    1 MRQGGHSKRPREGNSALYTAVCRGDADLVAELLKPKPHGQRDGSAAAAAGA------PAALDLEELSRGSTALHAGCGTGQSRIVAMLIEAGADPNTVRPKDGYSPLLIAVEVRERDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILELLVEGAAAAA-CDDGLLARKLLLQLSDARGHQPLHCAVRDGARARDTVLALLGMGAEVDGGALPALPPPPTP--LMLAALKVLPAIAKVLIEAGANVNAR 279
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BLAST of mRNA_E_fasciculatus_S2_contig8004.16174.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F6_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 4.330e-49
Identity = 111/206 (53.88%), Postives = 115/206 (55.83%), Query Frame = 1 
Query:    1 MPQGGHSKRPRERNSALYTAVCRGDAGLVAKLLKPKRDGQRDGNAAXXXXXXXXXXXPAALDLEELSRGSTALHAACGTGQTRIVAMLIEAGADPNTVRSKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPTLGKLLRPIHYASFSGHVNILELLVEAAAAAAACDDGERA 618
            M QGGHSK PRE NSALYTAVCRGDA L A+LLK KR GQ DG+AA           PAALDLEELSRGSTALHAACGT Q+RIVAMLIEAGADPNTV  KDG                                                            LQPTLGKLL PIHYAS SG V+ LELLVE AAAA  CDD  RA
Sbjct:    1 MRQGGHSKPPREGNSALYTAVCRGDANLAAELLKSKRHGQPDGSAAAAAGA------PAALDLEELSRGSTALHAACGTWQSRIVAMLIEAGADPNTVSPKDGYSPLLIAVGHAEGIAPLHMAASQGMTEIILDLLRAGANQ---------------------LQPTLGKLLAPIHYASSSGCVDTLELLVEGAAAAT-CDDSSRA 178
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8004.16174.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.860e-8172.22protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.330e-4953.88protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8004contigE_fasciculatus_S2_contig8004:1976..2839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score256.5
Seed ortholog evalue1.5e-65
Seed eggNOG ortholog2880.D7FVG6
Model size864
KEGG koko:K16726
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-09_001010.1
Cds size864
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842462.7140114-CDS-E_fasciculatus_S2_contig8004:1975..28391696842462.7140114-CDS-E_fasciculatus_S2_contig8004:1975..2839Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8004 1976..2839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8004.16174.1prot_E_fasciculatus_S2_contig8004.16174.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8004 1976..2839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8004.16174.1

>prot_E_fasciculatus_S2_contig8004.16174.1 ID=prot_E_fasciculatus_S2_contig8004.16174.1|Name=mRNA_E_fasciculatus_S2_contig8004.16174.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=288bp
MPQGGHSKRPRERNSALYTAVCRGDAGLVAKLLKPKRDGQRDGNAAAAAA
AAAAAGAPAALDLEELSRGSTALHAACGTGQTRIVAMLIEAGADPNTVRS
KDGNTPLLIAVEMGERDIVKALLEAKADPDLSNHTEGAAPLHVAAQQGMA
EIALELLRAGANQLQPTLGKLLRPIHYASFSGHVNILELLVEAAAAAAAC
DDGERARKLLLQLSDARGHQPLLCAVRDGARSRDTVLALLGMGAEVDGGS
PPPAPTPPPPTPLMLAAMKVLPAVAKALVEAGANVNAR
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mRNA from alignment at E_fasciculatus_S2_contig8004:1976..2839+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8004.16174.1 ID=mRNA_E_fasciculatus_S2_contig8004.16174.1|Name=mRNA_E_fasciculatus_S2_contig8004.16174.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=864bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8004:1976..2839+ (Ectocarpus fasciculatus EfasUO2)
ATGCCGCAGGGGGGGCACTCCAAGCGACCGCGGGAGCGAAACTCCGCCCT
GTACACCGCCGTCTGCCGGGGGGACGCCGGCCTTGTGGCGAAGCTCCTGA
AGCCGAAGCGAGATGGGCAACGGGACGGAAACGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCGGGCGCACCGGCGGCGTTAGACTTGGAGGAGCTCTC
CCGAGGCTCCACCGCCCTCCACGCCGCCTGCGGGACGGGGCAGACCCGGA
TCGTGGCAATGCTGATCGAGGCGGGGGCCGACCCCAACACGGTCAGGTCC
AAAGACGGCAACACCCCTCTCCTGATTGCCGTGGAGATGGGGGAGCGAGA
CATCGTCAAGGCTCTGCTGGAGGCCAAGGCGGACCCCGACTTGTCCAACC
ACACCGAGGGCGCCGCACCCCTGCACGTGGCCGCCCAGCAGGGGATGGCC
GAAATCGCCCTCGAGTTGCTGCGCGCCGGCGCAAACCAGCTGCAGCCCAC
GCTGGGCAAGCTGCTGCGGCCCATCCACTACGCCAGCTTCTCTGGGCACG
TGAACATCCTCGAGCTCCTCGTGGAGGCCGCAGCGGCGGCGGCGGCGTGC
GACGACGGCGAGCGCGCGCGCAAGCTCCTCCTCCAGCTGAGCGACGCGCG
GGGCCACCAGCCCCTGCTCTGCGCCGTTCGGGACGGGGCGCGCTCCCGGG
ACACGGTGCTGGCTCTCCTCGGAATGGGCGCCGAGGTGGACGGCGGGTCC
CCCCCGCCGGCCCCAACCCCGCCTCCCCCGACCCCGCTGATGCTCGCGGC
CATGAAGGTCTTGCCGGCGGTCGCCAAGGCCCTCGTCGAGGCCGGCGCGA
ACGTCAACGCTCGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8004:1976..2839+

>mRNA_E_fasciculatus_S2_contig8004.16174.1 ID=mRNA_E_fasciculatus_S2_contig8004.16174.1|Name=mRNA_E_fasciculatus_S2_contig8004.16174.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=864bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8004:1976..2839+ (Ectocarpus fasciculatus EfasUO2)
ATGCCGCAGGGGGGGCACTCCAAGCGACCGCGGGAGCGAAACTCCGCCCT
GTACACCGCCGTCTGCCGGGGGGACGCCGGCCTTGTGGCGAAGCTCCTGA
AGCCGAAGCGAGATGGGCAACGGGACGGAAACGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCGGGCGCACCGGCGGCGTTAGACTTGGAGGAGCTCTC
CCGAGGCTCCACCGCCCTCCACGCCGCCTGCGGGACGGGGCAGACCCGGA
TCGTGGCAATGCTGATCGAGGCGGGGGCCGACCCCAACACGGTCAGGTCC
AAAGACGGCAACACCCCTCTCCTGATTGCCGTGGAGATGGGGGAGCGAGA
CATCGTCAAGGCTCTGCTGGAGGCCAAGGCGGACCCCGACTTGTCCAACC
ACACCGAGGGCGCCGCACCCCTGCACGTGGCCGCCCAGCAGGGGATGGCC
GAAATCGCCCTCGAGTTGCTGCGCGCCGGCGCAAACCAGCTGCAGCCCAC
GCTGGGCAAGCTGCTGCGGCCCATCCACTACGCCAGCTTCTCTGGGCACG
TGAACATCCTCGAGCTCCTCGTGGAGGCCGCAGCGGCGGCGGCGGCGTGC
GACGACGGCGAGCGCGCGCGCAAGCTCCTCCTCCAGCTGAGCGACGCGCG
GGGCCACCAGCCCCTGCTCTGCGCCGTTCGGGACGGGGCGCGCTCCCGGG
ACACGGTGCTGGCTCTCCTCGGAATGGGCGCCGAGGTGGACGGCGGGTCC
CCCCCGCCGGCCCCAACCCCGCCTCCCCCGACCCCGCTGATGCTCGCGGC
CATGAAGGTCTTGCCGGCGGTCGCCAAGGCCCTCGTCGAGGCCGGCGCGA
ACGTCAACGCTCGA
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