mRNA_E_fasciculatus_S2_contig80.16164.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig80.16164.1 vs.
Match: C2H2 (zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT37_ECTSI) HSP 1 Score: 979 bits (2530), Expect = 0.000e+0 Identity = 527/604 (87.25%), Postives = 537/604 (88.91%), Query Frame = 1
Query: 361 MSQEDKMALLLQLADWNPVRKVKVMKAWEATDPAMTADFLLELIREEQARGEGPDSLWQCSLCPVKRNVEVEARMKRGEHRRKDRTIDAGSLYDYRAKGSGGGPDTYSSAHESLFEFKQQRH--LQQDERPRETGGTGGGASAAKGTKPQGGAQKTRYLEERAGTGIGGRAGDLISSPVNECLGRSGQRQEQLQFEVTYAGVDFDPRRVCAGCTEELRAAIVSSGHDLELWHTVDHERRALLTGQRRADVLKAQWAERERKDRQVSELLHLISEANLDAFSRHSLEDRAKAAQNLQAAEVRRMLDLKLSHAAAVKRGACKDEGLKHLNEREATAWAAKLRLKAALNMDRHYASLEPGGLPASLRRRNPTSSQPSDFLDDGTPATPQGAMQTFGRACPPEDNESGAIRLWKRGKFYGTEVLDLRRDVREWQSSCGRRARFSYLCERWVGVASDIEEKQRQKRMIEAAEREKRMNERQAAKLLRKLQLAELRANAGSRATGDERRKVERDKEAEERKRLEGEELERMSREEAAQLAGGDRYWGLIRELQRLRVIEEERRRAWEVRIRATKEKMVAVRCISELSDFTHATPPIDPELQQQIDRLLEI 2166
MSQ+DK LLLQLADWNPVRKVKVMKAWEATDPAMTA FLLELIREEQARGEGPDSLWQCSLCPVKRNVEVEARMKRGEHRRKDRTIDAGSLYDYR KGSGGGPDTYSSAHESLFEFKQQRH LQQDE P ETGGT GGA AA+GTKP GGAQKTRY+E+RAGT G AGDL SSP ECL RS AI+SSGHDLELWHTVDHERRALLTGQRRADVLKA+WAERERKDRQVSELL LISEANLDAFSRHSLEDRA AAQNLQ +VRRMLDLKLSH+AAV GACKDEGLK LNEREATAWAAKL+LKAALNMDRHYASLEPGGLPASLRRRNPTSSQPSDFLDDGTPATPQGAMQTFGRACPPEDNESGAIRLWKRG EVLDLRRDVREWQSSCGRRARFS LCERWVGVASDIEEKQRQKRMIEAAEREKRM ERQAAKLLRK QLAELRANAGSRATG+ERRKVERDKEAEERKRLEGEELERMSREEAAQLAGGDRYWGLIRELQRLRVIEEERRRAWEVRIRATKEKMVAVRCISELSDFTHATPPIDPELQQQIDRLLEI
Sbjct: 1 MSQQDKKILLLQLADWNPVRKVKVMKAWEATDPAMTAGFLLELIREEQARGEGPDSLWQCSLCPVKRNVEVEARMKRGEHRRKDRTIDAGSLYDYRVKGSGGGPDTYSSAHESLFEFKQQRHQHLQQDESPWETGGTAGGAGAAEGTKPLGGAQKTRYVEDRAGTASG--AGDLASSPAKECLDRS---------------------------------AIISSGHDLELWHTVDHERRALLTGQRRADVLKARWAERERKDRQVSELLRLISEANLDAFSRHSLEDRAMAAQNLQVVDVRRMLDLKLSHSAAVNSGACKDEGLKRLNEREATAWAAKLKLKAALNMDRHYASLEPGGLPASLRRRNPTSSQPSDFLDDGTPATPQGAMQTFGRACPPEDNESGAIRLWKRGAKETEEVLDLRRDVREWQSSCGRRARFSDLCERWVGVASDIEEKQRQKRMIEAAEREKRMRERQAAKLLRKRQLAELRANAGSRATGEERRKVERDKEAEERKRLEGEELERMSREEAAQLAGGDRYWGLIRELQRLRVIEEERRRAWEVRIRATKEKMVAVRCISELSDFTHATPPIDPELQQQIDRLLEI 569 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig80.16164.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig80.16164.1 >prot_E_fasciculatus_S2_contig80.16164.1 ID=prot_E_fasciculatus_S2_contig80.16164.1|Name=mRNA_E_fasciculatus_S2_contig80.16164.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=709bp MTSFMGLVNAQTRKTLQGVVRTISKSGQDPRMLKKKALVHALARLDIDRSback to top mRNA from alignment at E_fasciculatus_S2_contig80:44586..52342- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig80.16164.1 ID=mRNA_E_fasciculatus_S2_contig80.16164.1|Name=mRNA_E_fasciculatus_S2_contig80.16164.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=7757bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig80:44586..52342- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig80:44586..52342- >mRNA_E_fasciculatus_S2_contig80.16164.1 ID=mRNA_E_fasciculatus_S2_contig80.16164.1|Name=mRNA_E_fasciculatus_S2_contig80.16164.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2127bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig80:44586..52342- (Ectocarpus fasciculatus EfasUO2)back to top |