mRNA_E_fasciculatus_S2_contig80.16161.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig80.16161.1
Unique NamemRNA_E_fasciculatus_S2_contig80.16161.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig80.16161.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT39_ECTSI)

HSP 1 Score: 338 bits (866), Expect = 4.490e-116
Identity = 186/210 (88.57%), Postives = 192/210 (91.43%), Query Frame = 1 
Query:    1 MGMTAKTLPLSYLKDCGHLGEAQRRGLEKTTKILKRVATIAKLRAWQKWRQLVAPKRSAGKKATTTGNIRCAAVTRGYLARRRVAMVRRERAKETAQRAELKRSLLQRRLVKVSAASRMVASCLIANAAAXXXXXXXLVRAAVVMVERNYIARKAREQGWREIVLYRKEHAAAGMIQRWTRGVLVRRRTPLVSVGILKLECADGFSVERC 630
            MGMTA+TLPLSYLKD G+LGEAQRRGLEKTT I+KRVATIAKLRAWQKWRQL  PKRSAGKKATTTGNI CAAVTRGYLARRRVAM+RRERAK  AQRAELKRSLLQRRLVKVSAASR+VASCLIANA A       LVRAAV MVERNYIARKAREQGWREIVLYRKEHAAAGMIQRWTRGVLVRRRTPLVSVGILKLECA  FSV+RC
Sbjct:    1 MGMTARTLPLSYLKDIGYLGEAQRRGLEKTTNIVKRVATIAKLRAWQKWRQLGVPKRSAGKKATTTGNILCAAVTRGYLARRRVAMIRRERAKAAAQRAELKRSLLQRRLVKVSAASRIVASCLIANAWARRRERRRLVRAAVAMVERNYIARKAREQGWREIVLYRKEHAAAGMIQRWTRGVLVRRRTPLVSVGILKLECAGEFSVDRC 210
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig80.16161.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.490e-11688.57protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig80contigE_fasciculatus_S2_contig80:21105..22582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size630
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_004040.1
Cds size630
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842461.4226503-CDS-E_fasciculatus_S2_contig80:21104..212471696842461.4226503-CDS-E_fasciculatus_S2_contig80:21104..21247Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig80 21105..21247 +
1696842461.4363606-CDS-E_fasciculatus_S2_contig80:21651..219431696842461.4363606-CDS-E_fasciculatus_S2_contig80:21651..21943Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig80 21652..21943 +
1696842461.4447608-CDS-E_fasciculatus_S2_contig80:22387..225821696842461.4447608-CDS-E_fasciculatus_S2_contig80:22387..22582Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig80 22388..22582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig80.16161.1prot_E_fasciculatus_S2_contig80.16161.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig80 21105..22582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig80.16161.1

>prot_E_fasciculatus_S2_contig80.16161.1 ID=prot_E_fasciculatus_S2_contig80.16161.1|Name=mRNA_E_fasciculatus_S2_contig80.16161.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=210bp
MGMTAKTLPLSYLKDCGHLGEAQRRGLEKTTKILKRVATIAKLRAWQKWR
QLVAPKRSAGKKATTTGNIRCAAVTRGYLARRRVAMVRRERAKETAQRAE
LKRSLLQRRLVKVSAASRMVASCLIANAAARRRERRRLVRAAVVMVERNY
IARKAREQGWREIVLYRKEHAAAGMIQRWTRGVLVRRRTPLVSVGILKLE
CADGFSVERC
back to top

mRNA from alignment at E_fasciculatus_S2_contig80:21105..22582+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig80.16161.1 ID=mRNA_E_fasciculatus_S2_contig80.16161.1|Name=mRNA_E_fasciculatus_S2_contig80.16161.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1478bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig80:21105..22582+ (Ectocarpus fasciculatus EfasUO2)
ATGGGGATGACTGCGAAAACATTGCCACTGAGTTACCTGAAAGACTGTGG
GCATCTGGGAGAGGCGCAGAGGAGAGGGTTGGAAAAGACGACCAAGATTT
TGAAGAGGGTCGCCACGATCGCCAAGCTTCGGGCATGGCAGAAGTAAGCG
GGAACGATATTGTTTTATCGGGCTTGAGTTCGTCTGGTGTACTCTTTCGC
GGTCGGAGCGCTTGATACCCTGTACTTGCAGAGACAATGGTCGGCTGATG
GTAGTCTTGGGGTGAGTGAACAACCTTCATGATGGCAAGTGGATGATTTG
TTACGGTTTCAACTACGGTTACGTTGCCCTTTGGCGATGTTGCTGGGTCG
AACCACCCACCAAAATTGTCCCTCTTCGCCTTCCCAATCGAACTCATGCT
TGGGCTGGCGGAGTAGGCTCAAAGAGAGGCCCCTTTGGCGTGAGTTGAAC
CGAATTGATGAAGCTCGACCTATAGGGCGTACTTGGTGTGGTCTGGTTTG
CCTACCTTGCTTCAAATCTGTAAACCTCGATATTCATCTCTTGACAGGTG
GCGGCAACTGGTGGCCCCCAAACGTTCAGCGGGGAAGAAGGCCACCACCA
CCGGCAATATCCGCTGCGCCGCCGTTACCCGGGGATACCTAGCAAGAAGA
CGCGTCGCCATGGTCCGGAGAGAAAGGGCCAAGGAGACCGCTCAACGGGC
TGAGCTCAAGCGGTCCCTGCTGCAGCGCCGTCTTGTGAAGGTGTCGGCGG
CGTCACGCATGGTCGCCTCGTGCTTGATCGCCAACGCCGCGGCTCGCAGG
CGGGAGAGACGTCGGTTGGTTAGGGCAGCGGTGGTAATGGTGAGTTGGGA
GAGAGTACGGAACGCTCGCATCTGGGGGAAATGGGATTGGTCACTTCTTC
GCGATCTTTTGTCTTTAGGGCGTTGGTGAGGGTGAAGGTCGAGAAGATCA
GGGTAGGCACATGGTGTCACACATCTCCTTAGTACCTAGGTTGCTGCAGG
TTGTGGTAGAGGGGACTATCTGTGATCGACCGAAAACGGGAGAGCTTTCC
CGCCGCTTCCTGACGACACGCCCAGCGTTATACGCGGCCGTTCGGCTTCT
ATCGGCTTGACTACAGAATCGAAAGCGGGGGTGGGGCACACGGAGAGTTT
CGGAGGCCTCCGACACAAGGTTCCGCCCAAAGCATTGCCGATTGGCAAAC
CAAAGAATCCCCGACGTCGTCGGGCTGTCACTCGTTTTGCTTCGACCACT
CCCGCAATAACATCAAGGTACTTGTCGTGTTAGGTGGAGCGCAACTACAT
CGCTCGCAAGGCCAGGGAGCAAGGGTGGCGAGAGATCGTGCTTTACCGCA
AGGAGCATGCCGCCGCGGGTATGATTCAGCGCTGGACGCGCGGGGTGCTC
GTGAGGCGCCGGACTCCCCTAGTGAGCGTGGGGATACTGAAGCTTGAGTG
TGCGGATGGATTCTCGGTGGAACGTTGC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig80:21105..22582+

>mRNA_E_fasciculatus_S2_contig80.16161.1 ID=mRNA_E_fasciculatus_S2_contig80.16161.1|Name=mRNA_E_fasciculatus_S2_contig80.16161.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=630bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig80:21105..22582+ (Ectocarpus fasciculatus EfasUO2)
ATGGGGATGACTGCGAAAACATTGCCACTGAGTTACCTGAAAGACTGTGG
GCATCTGGGAGAGGCGCAGAGGAGAGGGTTGGAAAAGACGACCAAGATTT
TGAAGAGGGTCGCCACGATCGCCAAGCTTCGGGCATGGCAGAAGTGGCGG
CAACTGGTGGCCCCCAAACGTTCAGCGGGGAAGAAGGCCACCACCACCGG
CAATATCCGCTGCGCCGCCGTTACCCGGGGATACCTAGCAAGAAGACGCG
TCGCCATGGTCCGGAGAGAAAGGGCCAAGGAGACCGCTCAACGGGCTGAG
CTCAAGCGGTCCCTGCTGCAGCGCCGTCTTGTGAAGGTGTCGGCGGCGTC
ACGCATGGTCGCCTCGTGCTTGATCGCCAACGCCGCGGCTCGCAGGCGGG
AGAGACGTCGGTTGGTTAGGGCAGCGGTGGTAATGGTGGAGCGCAACTAC
ATCGCTCGCAAGGCCAGGGAGCAAGGGTGGCGAGAGATCGTGCTTTACCG
CAAGGAGCATGCCGCCGCGGGTATGATTCAGCGCTGGACGCGCGGGGTGC
TCGTGAGGCGCCGGACTCCCCTAGTGAGCGTGGGGATACTGAAGCTTGAG
TGTGCGGATGGATTCTCGGTGGAACGTTGC
back to top