mRNA_E_fasciculatus_S2_contig8.16151.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8.16151.1
Unique NamemRNA_E_fasciculatus_S2_contig8.16151.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8.16151.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY2_ECTSI)

HSP 1 Score: 503 bits (1294), Expect = 1.350e-179
Identity = 243/261 (93.10%), Postives = 252/261 (96.55%), Query Frame = 1 
Query:    1 VESVKIAHSSPDCLQRLGEALRADPNLADLHDVEKLLTEVDSDAFPQASVWEKSWTSMRCVVADTAETPPSLSTCVSISVLVLPRGTKLEWHRYHEARSVSRQLFGKLSICDAELQGSDNARKLEQQELEATYADGWAVGGSEESDCVCRGGRCPRMWDCPFWVDRRRAEAKGSSAHVALRTPEESFREACWRAGPQTVRRIEALAPSALLEVHVGPRSTRYYKEIASQAEDAVELIETLTPLGVKPGVCRYLGPSVDLRG 783
            +ESV +AHSSPD LQRL EALRADPNLADLH+VE+L+TEVDSDAFPQASVWE+SWTSMRCVVADTAETPPSLSTC+S+SVLVLPRGTKLEWHRYHEARS SRQLFG LSICDAELQGSDNARKLEQQELEATYADGWAVGGSEESDCVCRGGRCPRMWDCPFWVDRRRAEAKGSSAHVALRTPEES REACWRAGPQTVRRIEAL PSALLEVHVGPR+TRYYKEI SQ EDAVELIETLTPLGVKPGVCRYLGPSVDLRG
Sbjct:    1 MESVNVAHSSPDGLQRLAEALRADPNLADLHNVEELMTEVDSDAFPQASVWERSWTSMRCVVADTAETPPSLSTCISMSVLVLPRGTKLEWHRYHEARSFSRQLFGNLSICDAELQGSDNARKLEQQELEATYADGWAVGGSEESDCVCRGGRCPRMWDCPFWVDRRRAEAKGSSAHVALRTPEESSREACWRAGPQTVRRIEALEPSALLEVHVGPRNTRYYKEIPSQTEDAVELIETLTPLGVKPGVCRYLGPSVDLRG 261
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8.16151.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.350e-17993.10protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8contigE_fasciculatus_S2_contig8:36554..39041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size786
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_003310.1
Cds size786
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8.16151.1prot_E_fasciculatus_S2_contig8.16151.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8 36554..39041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842459.8286753-CDS-E_fasciculatus_S2_contig8:36553..366641696842459.8286753-CDS-E_fasciculatus_S2_contig8:36553..36664Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 36554..36664 -
1696842459.8398912-CDS-E_fasciculatus_S2_contig8:36884..370281696842459.8398912-CDS-E_fasciculatus_S2_contig8:36884..37028Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 36885..37028 -
1696842459.849548-CDS-E_fasciculatus_S2_contig8:37340..375161696842459.849548-CDS-E_fasciculatus_S2_contig8:37340..37516Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 37341..37516 -
1696842459.8595722-CDS-E_fasciculatus_S2_contig8:37680..377821696842459.8595722-CDS-E_fasciculatus_S2_contig8:37680..37782Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 37681..37782 -
1696842459.8699653-CDS-E_fasciculatus_S2_contig8:37996..381321696842459.8699653-CDS-E_fasciculatus_S2_contig8:37996..38132Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 37997..38132 -
1696842459.8861222-CDS-E_fasciculatus_S2_contig8:38924..390411696842459.8861222-CDS-E_fasciculatus_S2_contig8:38924..39041Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8 38925..39041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8.16151.1

>prot_E_fasciculatus_S2_contig8.16151.1 ID=prot_E_fasciculatus_S2_contig8.16151.1|Name=mRNA_E_fasciculatus_S2_contig8.16151.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=262bp
VESVKIAHSSPDCLQRLGEALRADPNLADLHDVEKLLTEVDSDAFPQASV
WEKSWTSMRCVVADTAETPPSLSTCVSISVLVLPRGTKLEWHRYHEARSV
SRQLFGKLSICDAELQGSDNARKLEQQELEATYADGWAVGGSEESDCVCR
GGRCPRMWDCPFWVDRRRAEAKGSSAHVALRTPEESFREACWRAGPQTVR
RIEALAPSALLEVHVGPRSTRYYKEIASQAEDAVELIETLTPLGVKPGVC
RYLGPSVDLRG*
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mRNA from alignment at E_fasciculatus_S2_contig8:36554..39041-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8.16151.1 ID=mRNA_E_fasciculatus_S2_contig8.16151.1|Name=mRNA_E_fasciculatus_S2_contig8.16151.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2488bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8:36554..39041- (Ectocarpus fasciculatus EfasUO2)
GTGGAGAGTGTCAAAATAGCCCATTCAAGCCCGGACTGCCTCCAGAGGCT
TGGGGAAGCTCTCCGTGCCGACCCCAACCTGGCTGACCTACACGATGTGG
AGAAACTGCTGACAGAGGTGCGTATTGCACACTGCACTATTTGACAAAAC
TTAGAAAAGACACAAAGGAGGTATAGGACGATTGCCCACGGCGTGTTTTG
TTGTGCGACGTCGCGAGCTCAACCTCCAACCTCCAAAAGAGAAAAAATAT
AGACTTCACACATTCTTCATTTGTAGTCTAAAGACTATGCTATGTACATA
AATACTTCTTGCAGCATGTTGTTTAGTCTATTGTACGTGGGACAGCAGGG
TCGGGGGCGATGAAGTGATCGGGGACGAAGGAGAGGCAGCGTTCGAACCG
TTTCTACGAGAAGGCGCGTTTGATATCCCCTCCTTGACATACAAGATTCA
GAAATTCAATTACGAGATTACCTGACACTACTACTATCGTATGTGATATG
CATACACCAGTTCCAACAACAATACGTCGAGTAGAGCCCACAAAGTGGTA
GCTGGTTTCCCTCCACTCACTGAAAAGATTTCAGCACATCCCTTTCGACC
GGGGTTTATCTCGAACAGGTTAGTCTTCATGTGTTTTTGTATATTTTTAT
TTTCTAAAACTGCAGATCTGAACGCCGACACCCCCCGTCAACCATGTCAT
GTATCTCACCAAGGCATCTCACACAGCAAAGTGGGCAAGTGGGCATTTTT
CAACGAAGTCCATGTCGACGTTTCTTGTGCGTGCGCGACAGCTGCGTTGC
CAGCACCGGCCAAACAACTATTGTACTTGTATCCCGCTGTGAGTGTTCAT
CAAACACATAAGACAGCGACCCGACACCCTGACTACCCTAGTTTTGTGCT
CTGTGACAGGTGGACAGTGATGCTTTCCCCCAGGCTTCGGTTTGGGAGAA
AAGTTGGACGTCGATGAGATGTGTCGTTGCTGACACTGCAGAGACACCAC
CCTCTCTCAGCACATGCGTTTCCATCAGCGTTTTGGTCCTGCCACGTGAG
TACTGCTGATTCTCGCAAGCCACCCAAGTGGTCGCGAACTACCTGGTGGC
ATGCTACCCAAGCTCGCAATCATGCCAGCAGGACTGCCTTGTATTGTGAA
ATGAGCACGTACTTCAAGGCCTCTGCATTTCTAGATTTGGACCCGGGAAC
TGCCATCGCAAAGTTCTACAAATGGGTTTCTCGATGCTCTGCCTGTTGCA
CACGTTCAGGGGGTACTAAGCTCGAGTGGCACCGATATCACGAAGCTCGG
AGTGTTTCGAGGCAACTTTTCGGGAAATTGAGCATCTGCGATGCAGAGCT
CCAAGGATCTGGTGAGGCTTTCAACGCTGACGCCTAACAAAATAAATGAA
AACAACCTGTATGGGATCCAATTTCCAGTTGTCCTCTAAACTCTAACAGC
AAATTGTCCCATGCACGCATACAGTGCGGGAGTACGGGCCTAATTCCATC
GTTCTCGCAAACTTGGCTTCATCAGACAATGCGCGGAAGCTGGAGCAACA
GGAGCTCGAGGCGACGTATGCGGATGGTTGGGCAGTGGGAGGCAGCGAGG
AGAGCGACTGTGTTTGTAGGGGAGGGAGATGCCCTCGAATGTGGGACTGC
CCTTTCTGGGTCGACCGGAGAAGGGCAGAAGCCAAGGGCAGCAGTGCTCA
TGTGCGTCCGCAAATTAGGGAGTACCCATTGCCGGTGGTATGACGACGTC
GGGTCGTGGTACTTTGTCCCATGGAGCATCTGCATCAACTCAGCATTCTC
AAGAGACAACTGAACACGCCAGGGATCAGTCAGCATTGCTGCCAACGTAT
TTGGTTTTTGCCCTGAAATCTGTAGTCTGTCAGAAATCGTACCAGGTGTG
TAGGTATACTATCTCCGCGGAAAGCGAACGACAAGCGCTCTGTCCGTCAA
ACATAACGGATTGGCTGTGCACGGAGCTAGCTGATGAACTCCCCCGCCCT
GTACTATCTTCAGGTTGCGCTCAGAACCCCGGAAGAATCATTCCGTGAGG
CCTGTTGGAGAGCGGGACCTCAAACCGTGAGGCGAATAGAAGCACTAGCG
CCTTCCGCTCTTCTCGAAGTCCACGTTGGCCCAAGAAGTACGCGGTACTA
CAAGGAGGTGAGAGTGGGAAAAATCCCAAGACACCACGCAGCTCCCTAGG
TACTCTTTTCAGCGACGGTGAAAGTGTGGAGCCCAATCATCGTCATGATG
AAGATGGTTGCAATGGGTAGGCCACGACTCAAGAGTATTTCGTACCTTCG
CAGCCCTAAAATGTGCCAAATGCTCCACTCTCTTTGTCGATGTGTTGCGC
GCATTTCACCACGCGCGCACCGTGCAGATTGCGTCACAGGCCGAGGACGC
GGTGGAGCTAATCGAAACCTTGACTCCGCTTGGAGTCAAGCCAGGCGTTT
GTCGATACCTCGGACCCTCTGTGGATCTTCGAGGGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8:36554..39041-

>mRNA_E_fasciculatus_S2_contig8.16151.1 ID=mRNA_E_fasciculatus_S2_contig8.16151.1|Name=mRNA_E_fasciculatus_S2_contig8.16151.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=786bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8:36554..39041- (Ectocarpus fasciculatus EfasUO2)
GTGGAGAGTGTCAAAATAGCCCATTCAAGCCCGGACTGCCTCCAGAGGCT
TGGGGAAGCTCTCCGTGCCGACCCCAACCTGGCTGACCTACACGATGTGG
AGAAACTGCTGACAGAGGTGGACAGTGATGCTTTCCCCCAGGCTTCGGTT
TGGGAGAAAAGTTGGACGTCGATGAGATGTGTCGTTGCTGACACTGCAGA
GACACCACCCTCTCTCAGCACATGCGTTTCCATCAGCGTTTTGGTCCTGC
CACGGGGTACTAAGCTCGAGTGGCACCGATATCACGAAGCTCGGAGTGTT
TCGAGGCAACTTTTCGGGAAATTGAGCATCTGCGATGCAGAGCTCCAAGG
ATCTGACAATGCGCGGAAGCTGGAGCAACAGGAGCTCGAGGCGACGTATG
CGGATGGTTGGGCAGTGGGAGGCAGCGAGGAGAGCGACTGTGTTTGTAGG
GGAGGGAGATGCCCTCGAATGTGGGACTGCCCTTTCTGGGTCGACCGGAG
AAGGGCAGAAGCCAAGGGCAGCAGTGCTCATGTTGCGCTCAGAACCCCGG
AAGAATCATTCCGTGAGGCCTGTTGGAGAGCGGGACCTCAAACCGTGAGG
CGAATAGAAGCACTAGCGCCTTCCGCTCTTCTCGAAGTCCACGTTGGCCC
AAGAAGTACGCGGTACTACAAGGAGATTGCGTCACAGGCCGAGGACGCGG
TGGAGCTAATCGAAACCTTGACTCCGCTTGGAGTCAAGCCAGGCGTTTGT
CGATACCTCGGACCCTCTGTGGATCTTCGAGGGTAG
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