mRNA_E_fasciculatus_S2_contig7998.16145.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7998.16145.1
Unique NamemRNA_E_fasciculatus_S2_contig7998.16145.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7998.16145.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7998contigE_fasciculatus_S2_contig7998:3684..7015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size396
Hectar predicted targeting categoryother localisation
Exons5
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842459.1151395-CDS-E_fasciculatus_S2_contig7998:3683..37601696842459.1151395-CDS-E_fasciculatus_S2_contig7998:3683..3760Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7998 3684..3760 +
1696842459.1356153-CDS-E_fasciculatus_S2_contig7998:4333..44291696842459.1356153-CDS-E_fasciculatus_S2_contig7998:4333..4429Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7998 4334..4429 +
1696842459.1542077-CDS-E_fasciculatus_S2_contig7998:5215..52871696842459.1542077-CDS-E_fasciculatus_S2_contig7998:5215..5287Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7998 5216..5287 +
1696842459.1673257-CDS-E_fasciculatus_S2_contig7998:5751..58231696842459.1673257-CDS-E_fasciculatus_S2_contig7998:5751..5823Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7998 5752..5823 +
1696842459.1778407-CDS-E_fasciculatus_S2_contig7998:6936..70151696842459.1778407-CDS-E_fasciculatus_S2_contig7998:6936..7015Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7998 6937..7015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7998.16145.1prot_E_fasciculatus_S2_contig7998.16145.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7998 3684..7015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7998.16145.1

>prot_E_fasciculatus_S2_contig7998.16145.1 ID=prot_E_fasciculatus_S2_contig7998.16145.1|Name=mRNA_E_fasciculatus_S2_contig7998.16145.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=132bp
NCGLTDEHVPDLAVCIDHAGGAIEELSLNNNRLTAAIFSWLDDNGQPLLG
GMRDLERLDLRGNSLGNVPAGAFDSLSALQTLNLYYCGATSLEADAFLGL
EALVHLGKGLGNSLGHFPAGAFNGLSALRKL*
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mRNA from alignment at E_fasciculatus_S2_contig7998:3684..7015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7998.16145.1 ID=mRNA_E_fasciculatus_S2_contig7998.16145.1|Name=mRNA_E_fasciculatus_S2_contig7998.16145.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3332bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7998:3684..7015+ (Ectocarpus fasciculatus EfasUO2)
AACTGCGGACTGACGGACGAACATGTCCCAGATCTTGCTGTCTGCATTGA
TCATGCCGGAGGAGCCATCGAAGAACTGCGAGCCTATGCACAACTTCTGC
ATGCTTTCCACGTGCGGTGGTTTTTGCGAGATTCATCAAACGGGTTACAA
CTGTATGGCAGCAGACCAGCTTATTACCGTCTCGGCGAAACAGGAAGTGT
GCAGACATCGAGAATGCAGACTCCCTTCCCTGGCCCCGAGCATTACCTGG
TCCACTTCGTTGTTCTCTCCTGGACTTTTTTTACCGTCTCTCCTACAAAC
GTGACCTCTTACGCTACGTGCGTAATCGAGAGCAACAGAAGGCTCTACCG
TGTTTCTTTCGTGGTACGGCCATGGTTGTTCCTGCAGCAGTCGCAGCGAC
ATGGTGGTCTCCCGAGCACGAGCTTGTACCCTGTATCAAGCAGACCTTCA
GGCTCATTTAGTTTTGGTATGGCGCGCACCATGCTTTACAGCGTGTTGAC
TGTCGCGAGTCTGACGGTATGCCAGCTAGTGCTTCTTTTCATTGTGAGGA
CGCCGATCGTGCATATTTGAGACCTCGGCGATCATGACGACGGTTTCATA
TGTACCGTTTCGCTTTTTTTGCCGTTTCTTTAACGCTATTTACCGCCAAG
GTCCCTAAACAACAACCGCCTGACGGCTGCTATTTTCTCGTGGCTGGATG
ACAACGGCCAGCCTCTTCTAGGCGGGATGCGCGACCTAGAACGCCTGTGA
GTACTCAAATACTGTTTATCATTACGTTGTTTCATCACAAGTCCACAGTA
GCCTTCGGGAGGATATAAAGATTGATCGTAGTAGGTGGGTTGGGGGTTAG
ATTTAGGGATAGGCATTCAAAGTGCCATCTCTATTTCAAAAATAAAATAT
TAGACCTTGCGAAGGCAATCCTAAGTCCCATACTTGGGTCGTTCACCTCA
CCTCCTAGTTTAGCGTTATTCGTGCGCTGTAAAGCTTATGTCCCGTCCAG
GTTGTTGCCAATTTCTGTACTGATGCGTAAGATAACAGCGGAAATTCGAA
GTGCGACAGATATACTTTGGCTCGTGCAGTTCTTTCACGGATGCCCTCTG
CCGATACGCAGCGAAGTCCTCGCCCGGTCATATGGTAGATCTTCCTGGTT
TCACGGCGAATCCGATGGTTGAACTGAATATTGTCGACCATGACGCCCTC
GGCAGTCGCGTCACCACGGGCCGATTCCGCGTCGTATCCTACGATTGAAA
GCATTCTCGGTCCTGACGCATCCGTCAGTCCACGCCGTGAGGTGCAAGAA
GAGAGTCCGAATGCGTCGTTGATTCACGCCTGCCACACCAGAGGAAGCGT
CTACAGGTCCACAATGCTGCACTACAGGGATGAAAGATACGGTTTCTTCC
TCCCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCCCACTCTCTCCATCAACGACAACAACGTTCTATTCTTGGA
GCTGACCGTCAAATCGAACTTGTTTCTTACAGGGACTTGCGCGGAAATTC
GCTGGGAAACGTGCCGGCCGGAGCGTTCGACAGTCTGTCTGCGCTCCAAA
CATTGTAAGTATCTCCGAATGCGTCTGACGTTGCTGTGGGCCTCGCAGCG
AAACGCTTGAGTGGTGCTTGACTTGCGTTCGATGCGTCCACTCTTCGTAA
AAGTGGCCTTGGCCTTGAGAATTAACCAAGGTCGTTCAGTCAGTCAGTGC
GGAGTATGCGGATTGGTGTCTCGAATGAATCCTTGTTTGGGTGATGGCGA
AGCTTGTCACGGGTAGTCTCGCAAATGATTTGATTGTGGGCAAGTGGCGC
AATGCGTCTCGGCGTGTGTAGGCGTAACCATCGAGCACCTCTTGTGCTCT
TCCGCCCCAGCCTTTTCGTCGTTGAAGGCGATTCTGTGGGTGGCTGTTTT
GTTTTGCGGCACTCTACATCAAATATTCGCTTAAGCATGGGCATACAACG
AACAAATGCCTCTAGGACTGCAACACCGGTCTTTCCTGCATTGGTGGCGG
TCTGCACTCTCGTGACAGGAACCTCTACTACTGCGGCGCGACATCCCTGG
AGGCCGACGCCTTCCTGGGCCTCGAGGCTCTCGTTCATCTGTAAGCGGGC
TAAAGCCATTCTTATATATGTTCTATATACATACTCCTATATATTTTTTC
CATCTCTTGAAATCGGCCCTAACACACCACGAACATGTTGCCTGGTAGGT
GCTCCTCGTAGACCGTGCGCATCAATTTACAGTAGTAGGTGTGCATGTAT
CCACGCCTTTGCTCGTAGGACACACCCGCACTCCGAATGGTTTACTAAGC
ATAGCAATCGGGTGTCTCGCTGGGCACTTGTACGTAGTATCATGCCTTGT
TGGCAGACTTGAGGGCGCTCGTGTGCAGCACCACTGCCTCCCCAAAACCG
GATAATATATCACGTTAAATATGGATATTCACCATAATAGTCTAGTCTAC
ACAAGGTGGGGAGGGAAAGGAGCTCTCCTGTGTGACCACGGGTCGGAGCT
CATAACCGGCAGCAATGCTGTGAGCACAGGTATTATATGTGATGATCGGT
GGTTAACATAAAAAAACGCTCCATAGTATGAACTGATTACAATGGTCGAA
GGCGGGGATTGAGTGTTGCTTGTGTTCCCTCCTCAGCGTTGCTCCTGACT
AAAGGGTCTCAGTCTTTCTCCACGTGCGCAGACGTTTTGCTGGTTCCGTT
TACATACTTTCAGCGCCATGGCCTTCGCGCGCAGGCTAATCTCTGTAGAA
CAAAACGAGGCCGGTGGTTGAGGATACAGCGTCGTGTCTGTTGAGCGAAT
GGAGCTCCTGGCTCGACGTGCCTACAGCAGTCTGCACTTTCTCATTCTCG
CTATCCAGCCCTGTGCTATGCCTTGGCGGTCTGTGGAGGTGGGACTAGCT
TTCCAAATATTCATTTGCATCGAGGTCCCCAGGCATGTTACGCATAGAGG
CCCTTCGTCTATGCTGTATCGCTACCTGAAACGAGTCTTTTACTGCTCCT
GAGTACCTTCCCCTATCCCTTTCCCTTTGCTTGCTCTATATCGGCCGTCC
CTCGTTTTTCCTGTCCCTCCTTCTGCTGCCTGCATGTCTGTCTCTTTATC
TGTCCCTCTTTCGTCCTCTCTCTCACCCCTCTCTCTACCCTCTCAACGCG
ACGACGTTCACCATGGGGACTCCTTGCAACTCAACCTCGACTCAAACATG
CAGGGGTAAAGGCCTTGGGAATTCGTTGGGACATTTTCCAGCCGGAGCGT
TCAACGGTCTTTCGGCCCTACGAAAGCTGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7998:3684..7015+

>mRNA_E_fasciculatus_S2_contig7998.16145.1 ID=mRNA_E_fasciculatus_S2_contig7998.16145.1|Name=mRNA_E_fasciculatus_S2_contig7998.16145.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=396bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7998:3684..7015+ (Ectocarpus fasciculatus EfasUO2)
AACTGCGGACTGACGGACGAACATGTCCCAGATCTTGCTGTCTGCATTGA
TCATGCCGGAGGAGCCATCGAAGAACTGTCCCTAAACAACAACCGCCTGA
CGGCTGCTATTTTCTCGTGGCTGGATGACAACGGCCAGCCTCTTCTAGGC
GGGATGCGCGACCTAGAACGCCTGGACTTGCGCGGAAATTCGCTGGGAAA
CGTGCCGGCCGGAGCGTTCGACAGTCTGTCTGCGCTCCAAACATTGAACC
TCTACTACTGCGGCGCGACATCCCTGGAGGCCGACGCCTTCCTGGGCCTC
GAGGCTCTCGTTCATCTGGGTAAAGGCCTTGGGAATTCGTTGGGACATTT
TCCAGCCGGAGCGTTCAACGGTCTTTCGGCCCTACGAAAGCTGTGA
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