mRNA_E_fasciculatus_S2_contig7996.16144.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7996.16144.1
Unique NamemRNA_E_fasciculatus_S2_contig7996.16144.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7996.16144.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL04_ECTSI)

HSP 1 Score: 523 bits (1348), Expect = 5.220e-182
Identity = 267/301 (88.70%), Postives = 276/301 (91.69%), Query Frame = 1
Query:    1 SGVMGGDNERPEAGTAPSWLSQEQQQLGHDPSQQPHGEADTPSSSWASGSRAK-AGPASAGLPSRCFQAIEAHSAGVNGVVFEKGGVLLATAGDDSYVKVWDPGSGRQRAALKGAAHKGMAAMITVDIHGDLVCGGASDGSCTVWSLRTCREQARLTGHQQKVCAVSFCDAGQRLVTGSQDCSIKVWDLHRGQWNAVTTAMRATSKCNAVDVSHSWKDSKGNNAVVVSGHMDGSVRLWDMRSGSCAHQLKGLHTDHVTSVRFAPGRGNLLLTNSKDSSLKVVDARMYQMVACLTHPKFRTT 900
            SGVMGGDNERPEAGTAP+WLSQEQQ +G DPSQQP GE D P+SSWASG R K AGPAS GLPSRCFQAIEAHS+GVNGVVFEKGGVLLATAGDDSYVKVWDPGSGRQRAALKGAAHKGMAAMITVDIHGDLVCGGASDGSCTVWSLRT REQARLTGHQQKVCAVSFCD GQRLVTGSQDCSIKVWDLHRGQWNA+TTAMRATSKCNAVDVSHSWKDSKG NAVVVSGHMDG+VRLWDMRSGSCAHQLKGLHTDHVTSVRFAPGR NLLLTNSKDSSLKV      + V C +   +RTT
Sbjct:  183 SGVMGGDNERPEAGTAPAWLSQEQQ-VGDDPSQQPQGEGDMPASSWASGLRKKNAGPASTGLPSRCFQAIEAHSSGVNGVVFEKGGVLLATAGDDSYVKVWDPGSGRQRAALKGAAHKGMAAMITVDIHGDLVCGGASDGSCTVWSLRTSREQARLTGHQQKVCAVSFCDTGQRLVTGSQDCSIKVWDLHRGQWNAMTTAMRATSKCNAVDVSHSWKDSKGTNAVVVSGHMDGAVRLWDMRSGSCAHQLKGLHTDHVTSVRFAPGRANLLLTNSKDSSLKV-----RRSVKCCSGIAWRTT 477          
BLAST of mRNA_E_fasciculatus_S2_contig7996.16144.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSX3_9STRA)

HSP 1 Score: 191 bits (485), Expect = 2.050e-53
Identity = 110/258 (42.64%), Postives = 148/258 (57.36%), Query Frame = 1
Query:  181 LPSRCFQAIEAHSAGVNGVVFEK-GGVLLATAGDDSYVKVWDPGSGRQRAALKGAAHKGMAAMITVDIHGDLVCGGASDGSCTVWSLRTCREQARLTGHQQKVCAVSFCDAGQRLVTGSQDCSIKVWDLHRGQWNAVTTAMRATSKCNAVDVSHSWKDSKGNNAVVVSGHMDGSVRLWDMRSGSCAHQLKGLHTDHVTSVRFAPGRGNLLLTNSKDSSLKVVDARMYQMVACLTHPKFRTTSSFSRACFSPSAAYAAA 951
            +P+     I+AHS+ V  V ++  G  L+AT+ +DS V+VWD  SG  RA L+G +     AM+  DI G LV G ASD SC VW L T R   +L GH  KV        G+ ++T S D SIK+WD+ R  +   TT +R +S  N +DVS+  K        VVSGHMDG VR WD+RSG    +++ LHT  VT     P  G  +LTN +DS LK+VD RM  +++ +TH  FRT  ++S   +SP   YAAA
Sbjct:   76 IPTEAKHVIQAHSSEVTSVRYDGVGSDLVATSSNDSTVRVWDTSSGAMRATLRGGSGH---AMMGCDIVGGLVVGCASDKSCRVWKLSTQRMIHQLVGHGNKVTCARLISGGKEVLTASADRSIKLWDISRNTYRQTTT-LRHSSTANCLDVSYDTK-------TVVSGHMDGGVRFWDIRSGEKTAEIETLHTGGVTCAHLHPTNGTQILTNGRDSVLKLVDIRMGSVISTMTHKDFRTPFNWSACSYSPDGVYAAA 322          
BLAST of mRNA_E_fasciculatus_S2_contig7996.16144.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WGS3_9STRA)

HSP 1 Score: 181 bits (460), Expect = 4.790e-48
Identity = 106/258 (41.09%), Postives = 143/258 (55.43%), Query Frame = 1
Query:  184 PSRCFQAIEAHSAGVNGVVFEKGGV-LLATAGDDSYVKVWDPGSGRQRAALKGA-AHKGMAAMITVDIHGDLVCGGASDGSCTVWSLRTCREQARLTGHQQKVCAVSFCDAGQRLVTGSQDCSIKVWDLHRGQWNAVTTAMRATSKCNAVDVSHSWKDSKGNNAVVVSGHMDGSVRLWDMRSGSCAHQLKGLHTDHVTSVRFAPGRGNLLLTNSKDSSLKVVDARMYQMVACLTHPKFRTTSSFSRACFSPSAAYAAA 951
            PS     I+AH      V ++  G  L+ATA  DS VK+WD  +G+ RA L+G   H     M+ VDI G L  G  SD +C VW+LRT R   +L GH  K+  V      + ++TGS D S+KVWD+ R  +   TT +R +S  N+VDVS     S       VSGHMDG +R WD+RSG     ++ LH   VTSV+F+P     +LTN +DS+LK+VD R    +    HP+FRT  +++    SP   YAAA
Sbjct:  271 PSEPKHIIQAHPQEATAVKYDGTGTDLVATASSDSNVKIWDTSNGQVRATLRGGNGHP----MLGVDISGGLAVGCGSDKTCRVWNLRTQRMIHQLAGHSHKITCVRLFHTEKEIITGSADRSLKVWDITRSTYRQTTT-LRHSSTSNSVDVSSDAMTS-------VSGHMDGGIRFWDVRSGERTLDIQSLHQGGVTSVQFSPNNSTQILTNGRDSTLKLVDMRTCATLQVFQHPEFRTLLNYASCSLSPDGMYAAA 516          
BLAST of mRNA_E_fasciculatus_S2_contig7996.16144.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2AAH2_TRICV)

HSP 1 Score: 176 bits (446), Expect = 4.790e-46
Identity = 104/251 (41.43%), Postives = 142/251 (56.57%), Query Frame = 1
Query:  205 IEAHSAGVNGVVFEKGGV-LLATAGDDSYVKVWDPGSGRQRAALKGAAHKGMAAMITVDIHGDLVCGGASDGSCTVWSLRTCREQARLTGHQQKVCAVSFCDAGQRLVTGSQDCSIKVWDLHRGQWNAVTTAMRATSKCNAVDVSHSWKDSKGNNAV-VVSGHMDGSVRLWDMRSGSCAHQLKGLHTDHVTSVRFAPGRGNLLLTNSKDSSLKVVDARMYQMVACLTHPKFRTTSSFSRACFSPSAAYAAA 951
            ++AH+     V ++  G  L+ATA  DS VK+WD GSG+ RA L+G +      M+ VDI G L  G  SD +C VW+LRT R   +L GH QK+         + ++TGS D S+KVWD+ R  +   TT MR +S  N++DVS        N+AV VVSGHMDG +R WDMR+      +  LH   +TSV F+P     LLT+ +DS+LK+VD R    +    H  FRT  +++    SP   YAAA
Sbjct:  279 LQAHAQEATAVRYDGTGTDLVATASSDSTVKIWDTGSGQVRATLRGGSGY---PMLGVDISGGLAVGCGSDKTCRVWNLRTQRMIHQLAGHSQKITCCRLFQNEKGVITGSADRSLKVWDISRSTYRQTTT-MRHSSTSNSLDVS--------NDAVTVVSGHMDGGLRFWDMRTADRTADISSLHEGGITSVYFSPSNNTHLLTSGRDSTLKLVDMRTCTTLQTFFHGDFRTLVNYASCSLSPDGVYAAA 517          
BLAST of mRNA_E_fasciculatus_S2_contig7996.16144.1 vs.
Match: Hypothetical (protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT70_HETAK)

HSP 1 Score: 162 bits (410), Expect = 3.840e-44
Identity = 92/270 (34.07%), Postives = 139/270 (51.48%), Query Frame = 1
Query:  400 GGASDGSCTVWSLRTCREQARLTGHQQKVCAVSFCDAGQRLVTGSQDCSIKVWDLHRGQWNAVTTAMRATSKCNAVDVSHSWKDSKGNNAVVVSGHMDGSVRLWDMRSGSCAHQLKGLHTDHVTSVRFAPGRGNLLLTNSKDSSLKVVDARMYQMVACLTHPKFRTTSSFSRACFSPSAAYAAAXXXXXXXXXXDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSVVTVLQTHGVPASGCDWCLNMPSTLLIASCDSKGGLRVW 1209
            G ++D +  VWS  + R    L GH  ++ AV      + ++T S D  +KVWD+ R +  A TT +RATS CNA DV+        + A V++GH DG +R WD+RSG+  + +K LH   +TSV ++P   + +LTNS+D++LK+VDAR Y+++  ++HP +RT+ ++SR  FSP+ AYAAA          D+                                  SV T+L  H    S C W     S+  + SCD +G L +W
Sbjct:    2 GASTDRTGFVWSAASGRRAHHLQGHGARLHAVRLFPGARTVLTASGDRCVKVWDIAR-EMCACTTTLRATSSCNAADVAP-------DGAAVLTGHQDGGLRFWDVRSGAKVNDIKSLHQSQITSVMYSPDNASTILTNSRDNTLKLVDARTYEVITTMSHPSYRTSYNWSRTTFSPNGAYAAAGSGDGSVFVFDVYD-------------------------------GSVKTILTHHRSAVSSCYW-----SSSQLMSCDREGFLTLW 227          
BLAST of mRNA_E_fasciculatus_S2_contig7996.16144.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y1Y4_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.310e-43
Identity = 92/234 (39.32%), Postives = 129/234 (55.13%), Query Frame = 1
Query:  250 GGVLLATAGDDSYVKVWDPGSGRQRAALKGAAHKGMAAMITVDIHGDLVCGGASDGSCTVWSLRTCREQARLTGHQQKVCAVSFCDAGQRLVTGSQDCSIKVWDLHRGQWNAVTTAMRATSKCNAVDVSHSWKDSKGNNAVVVSGHMDGSVRLWDMRSGSCAHQLKGLHTDHVTSVRFAPGRGNLLLTNSKDSSLKVVDARMYQMVACLTHPKFRTTSSFSRACFSPSAAYAAA 951
            G  L+ TAG DS VKVWD  SG  R  L G+       M+  D++G +V G +SD +C VW++RT R    L GHQ K+     C  G+ ++TGS D S+KVWD+ R  +   TT +R  S  + +DV         ++   VSGHMDG +R WD+R+G    +++ +H   + SV+F+P     +LTN  DS +K+VD R    V    H +F T  +FS A  SP   YAAA
Sbjct:  296 GNDLVVTAGSDSSVKVWDTNSGSARVTLHGSPGH---TMMACDMYGSVVIGASSDKTCRVWNMRTERMLHHLVGHQHKISCARLCAQGEAVLTGSADRSLKVWDISRQTYKQTTT-LRHGSTAHCLDVG-------SDSFSAVSGHMDGGLRFWDLRTGDRTTEIREMHDGGICSVQFSPVSSTQVLTNGLDSCVKLVDIRTGTAVHTFRHAEFSTVQAFSAAVLSPDGKYAAA 518          
BLAST of mRNA_E_fasciculatus_S2_contig7996.16144.1 vs.
Match: Uncharacterized (protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KI13_FISSO)

HSP 1 Score: 155 bits (391), Expect = 1.830e-38
Identity = 90/234 (38.46%), Postives = 128/234 (54.70%), Query Frame = 1
Query:  250 GGVLLATAGDDSYVKVWDPGSGRQRAALKGAAHKGMAAMITVDIHGDLVCGGASDGSCTVWSLRTCREQARLTGHQQKVCAVSFCDAGQRLVTGSQDCSIKVWDLHRGQWNAVTTAMRATSKCNAVDVSHSWKDSKGNNAVVVSGHMDGSVRLWDMRSGSCAHQLKGLHTDHVTSVRFAPGRGNLLLTNSKDSSLKVVDARMYQMVACLTHPKFRTTSSFSRACFSPSAAYAAA 951
            G  L+AT G DS VKVWD G+G  RA L G+       +++ D++ +LV G ++D +C VW++RT R    L GHQ KV  V    + + ++T S D SIKVWD++R  +   TT +R +S  N +D++        +   + SGHMDG+VR WD+RSGS       LH   VTS+ F       +LTN  DS LK++D R    +    H  F T+ S+S    SP   +A A
Sbjct:  265 GNDLVATCGMDSTVKVWDAGTGALRATLHGSTSY---PILSCDVYDNLVAGASTDKTCRVWNVRTQRMLHHLVGHQHKVNCVRLNGSEKSVITASSDRSIKVWDINRTTYRQSTT-LRHSSTTNCLDIA-------SDPNTLCSGHMDGAVRGWDLRSGSRCFDFTELHGGGVTSIHFNLANSTEVLTNGLDSCLKLIDVRTGMPLQTFRHKDFVTSQSWSSGVLSPDGKFAVA 487          
BLAST of mRNA_E_fasciculatus_S2_contig7996.16144.1 vs.
Match: ATG16 (domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A5I5_DICPU)

HSP 1 Score: 146 bits (368), Expect = 5.030e-35
Identity = 88/257 (34.24%), Postives = 139/257 (54.09%), Query Frame = 1
Query:  181 LPSRCFQAIEAHSAGVNGVVFEKGGVLLATAGDDSYVKVWDPGSGRQRAALKGAAHKGMAAMITVDIHGDLVCGGASDGSCTVWSLRTCREQARLTGHQQKVCAVSFCDAGQRLVTGSQDCSIKVWDLHRGQWNAVTTAMRATSKCNAVDVSHSWKDSKGNNAVVVSGHMDGSVRLWDMRSGSCAHQLKGLHTDHVTSVRFAPGRGNLLLTNSKDSSLKVVDARMYQMVACLTHPKFRTTSSFSRACFSPSAAYAAA 951
            LPS+  +   AH++ +  + F   G L+A+ G D  VKVWD  SG+ +A L GA+   M+  +    + + V G ++D S  +WS    R +  LTGH  KV    F +   R+VTGS D +IK+WDL +G     T  +   S CN + +        GN+  +VSGH+D SVR WD   G   H L  +H   +TS+  +P   + +LTNS+D +LK++D R ++ +      ++R   ++++A +SP  AY A+
Sbjct:  296 LPSKAKRRWTAHNSEIYCIAFNTMGNLMASGGGDKAVKVWDIISGQTKATLLGASQSIMS--VEFSPNDETVLGTSNDNSARLWSTELGRSRHTLTGHIGKVYTGKFFNPN-RVVTGSHDRTIKLWDLQKGY---CTRTIFCFSSCNDLAI----LGGTGNH--LVSGHVDHSVRFWDSNIGEPTHVLSSIHEGQITSITNSPVNSHHILTNSRDHTLKIIDTRTFETIRTFKDQEYRNGLNWTKAAWSPDGAYIAS 540          
BLAST of mRNA_E_fasciculatus_S2_contig7996.16144.1 vs.
Match: Hypothetical (protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2HHW2_9STRA)

HSP 1 Score: 145 bits (367), Expect = 7.590e-35
Identity = 95/258 (36.82%), Postives = 132/258 (51.16%), Query Frame = 1
Query:  181 LPSRCFQAIEAHSAGVNGVVFEKGGV-LLATAGDDSYVKVWDPGSGRQRAALKGAAHKGMAAMITVDIHGDLVCGGASDGSCTVWSLRTCREQARLTGHQQKVCAVSFCDAGQRLVTGSQDCSIKVWDLHRGQWNAVTTAMRATSKCNAVDVSHSWKDSKGNNAVVVSGHMDGSVRLWDMRSGSCAHQLKGLHTDHVTSVRFAPGRGNLLLTNSKDSSLKVVDARMYQMVACLTHPKFRTTSSFSRACFSPSAAYAAA 951
            LP+     I+AH      V ++  G+ L+AT   DS VKVWD  +G+ +A L+G +      M+ VD+ G LV G  +D +C VW++RT R   +L GH  KV  V   +  + ++TGS D SIKVWD+ R  +   TT  R +S  N +DVS        ++  V             +RSG     +  +H   VTSV+  P  GN +LTN +DS L+VVD R    V  L H  FRT  ++S    SP  AYA A
Sbjct:  304 LPTTPKHVIQAHPIEATSVRYDGTGLDLIATGSSDSTVKVWDTNNGQVKATLRGGSGH---PMLGVDLSGGLVVGCGADKTCRVWNIRTQRMIHQLAGHSTKVTCVRLLNNEKGVITGSADRSIKVWDISRSTYKQTTT-FRHSSTSNCMDVSL-------DSLTVFXXXXXXXXXXXXVRSGKRVLDVLSMHEGGVTSVQCHPMNGNQILTNGRDSVLRVVDVRTCTAVQSLGHEDFRTAFNYSSCGISPDGAYALA 550          
BLAST of mRNA_E_fasciculatus_S2_contig7996.16144.1 vs.
Match: Protein (tipD n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=TIPD_DICDI)

HSP 1 Score: 145 bits (365), Expect = 1.480e-34
Identity = 84/257 (32.68%), Postives = 138/257 (53.70%), Query Frame = 1
Query:  181 LPSRCFQAIEAHSAGVNGVVFEKGGVLLATAGDDSYVKVWDPGSGRQRAALKGAAHKGMAAMITVDIHGDLVCGGASDGSCTVWSLRTCREQARLTGHQQKVCAVSFCDAGQRLVTGSQDCSIKVWDLHRGQWNAVTTAMRATSKCNAVDVSHSWKDSKGNNAVVVSGHMDGSVRLWDMRSGSCAHQLKGLHTDHVTSVRFAPGRGNLLLTNSKDSSLKVVDARMYQMVACLTHPKFRTTSSFSRACFSPSAAYAAA 951
            LPS+  +    H++ +  + F   G LLAT G D  VKVWD  SG+Q++ L GA+   ++  ++   + + + G ++D S  +W+    R +  LTGH  KV    F ++  R+VTGS D +IK+WDL +G     T  +   S CN + +        G+   + SGH+D SVR WD  +G     L  +H   +TS+  +P   N +LTNS+D +LK++D R +  +     P++R   ++++A +SP   Y A+
Sbjct:  312 LPSKAKKRWTGHNSEIYCMAFNSIGNLLATGGGDKCVKVWDVISGQQKSTLLGASQSIVS--VSFSPNDESILGTSNDNSARLWNTELGRSRHTLTGHIGKVYTGKFINSN-RVVTGSHDRTIKLWDLQKGY---CTRTIFCFSSCNDLVI------LGGSGTHLASGHVDHSVRFWDSNAGEPTQVLSSIHEGQITSITNSPTNTNQILTNSRDHTLKIIDIRTFDTIRTFKDPEYRNGLNWTKASWSPDGRYIAS 556          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7996.16144.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized5.220e-18288.70protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical2.050e-5342.64protein n=1 Tax=Attheya septentrionalis TaxID=4202... [more]
Hypothetical4.790e-4841.09protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]
Hypothetical4.790e-4641.43protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Hypothetical3.840e-4434.07protein n=2 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical3.310e-4339.32protein n=1 Tax=Amphiprora paludosa TaxID=265537 R... [more]
Uncharacterized1.830e-3838.46protein n=2 Tax=Fistulifera solaris TaxID=1519565 ... [more]
ATG165.030e-3534.24domain-containing protein n=1 Tax=Dictyostelium pu... [more]
Hypothetical7.590e-3536.82protein n=3 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Protein1.480e-3432.68tipD n=1 Tax=Dictyostelium discoideum TaxID=44689 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7996contigE_fasciculatus_S2_contig7996:139..4901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score517.7
Seed ortholog evalue4.9e-144
Seed eggNOG ortholog2880.D8LL04
Model size1215
KEGG koko:K17890
KEGG Pathwayko04136,ko04138,ko04140,ko04621,map04136,map04138,map04140,map04621
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000421,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005776,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006909,GO:0006914,GO:0006950,GO:0006952,GO:0006996,GO:0007033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010498,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0016740,GO:0019538,GO:0019776,GO:0019941,GO:0022607,GO:0030163,GO:0030587,GO:0031090,GO:0031154,GO:0032502,GO:0032991,GO:0034274,GO:0035973,GO:0042742,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0050830,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0051703,GO:0051704,GO:0051707,GO:0061912,GO:0061919,GO:0070925,GO:0071704,GO:0071840,GO:0090382,GO:0090702,GO:0098542,GO:0098588,GO:0098657,GO:0098805,GO:0099120,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905037,GO:1990234
Exons7
EggNOG free text desc.negative stranded viral RNA replication
EggNOG OGsKOG0288@1,KOG0288@2759
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-11_006240.3
Cds size1206
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7996.16144.1prot_E_fasciculatus_S2_contig7996.16144.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7996 148..4901 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842459.0092008-UTR-E_fasciculatus_S2_contig7996:138..1471696842459.0092008-UTR-E_fasciculatus_S2_contig7996:138..147Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7996 139..147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842459.0237312-CDS-E_fasciculatus_S2_contig7996:147..4741696842459.0237312-CDS-E_fasciculatus_S2_contig7996:147..474Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7996 148..474 +
1696842459.0340178-CDS-E_fasciculatus_S2_contig7996:1240..13871696842459.0340178-CDS-E_fasciculatus_S2_contig7996:1240..1387Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7996 1241..1387 +
1696842459.0462499-CDS-E_fasciculatus_S2_contig7996:1924..19931696842459.0462499-CDS-E_fasciculatus_S2_contig7996:1924..1993Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7996 1925..1993 +
1696842459.0576823-CDS-E_fasciculatus_S2_contig7996:2776..29291696842459.0576823-CDS-E_fasciculatus_S2_contig7996:2776..2929Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7996 2777..2929 +
1696842459.0676239-CDS-E_fasciculatus_S2_contig7996:3651..37111696842459.0676239-CDS-E_fasciculatus_S2_contig7996:3651..3711Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7996 3652..3711 +
1696842459.0760984-CDS-E_fasciculatus_S2_contig7996:3983..40551696842459.0760984-CDS-E_fasciculatus_S2_contig7996:3983..4055Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7996 3984..4055 +
1696842459.0842822-CDS-E_fasciculatus_S2_contig7996:4523..49011696842459.0842822-CDS-E_fasciculatus_S2_contig7996:4523..4901Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7996 4524..4901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7996.16144.1

>prot_E_fasciculatus_S2_contig7996.16144.1 ID=prot_E_fasciculatus_S2_contig7996.16144.1|Name=mRNA_E_fasciculatus_S2_contig7996.16144.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=402bp
MGGDNERPEAGTAPSWLSQEQQQLGHDPSQQPHGEADTPSSSWASGSRAK
AGPASAGLPSRCFQAIEAHSAGVNGVVFEKGGVLLATAGDDSYVKVWDPG
SGRQRAALKGAAHKGMAAMITVDIHGDLVCGGASDGSCTVWSLRTCREQA
RLTGHQQKVCAVSFCDAGQRLVTGSQDCSIKVWDLHRGQWNAVTTAMRAT
SKCNAVDVSHSWKDSKGNNAVVVSGHMDGSVRLWDMRSGSCAHQLKGLHT
DHVTSVRFAPGRGNLLLTNSKDSSLKVVDARMYQMVACLTHPKFRTTSSF
SRACFSPSAAYAAAASANGNVYVWDIARSSSSSSSGGASASGADAVAAAS
PMAAGTSTSSSVVTVLQTHGVPASGCDWCLNMPSTLLIASCDSKGGLRVW
G*
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mRNA from alignment at E_fasciculatus_S2_contig7996:139..4901+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7996.16144.1 ID=mRNA_E_fasciculatus_S2_contig7996.16144.1|Name=mRNA_E_fasciculatus_S2_contig7996.16144.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4763bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7996:139..4901+ (Ectocarpus fasciculatus EfasUO2)
AGCGGCGTCATGGGCGGCGACAACGAACGTCCTGAAGCGGGAACCGCACC TTCTTGGCTGTCCCAGGAGCAGCAACAGCTTGGCCATGATCCCTCCCAAC AACCACATGGTGAGGCGGACACGCCTTCCTCTTCGTGGGCATCTGGGTCA CGGGCAAAGGCGGGTCCCGCATCCGCGGGCTTGCCGAGCAGGTGCTTCCA GGCGATCGAGGCTCACTCTGCCGGCGTGAACGGGGTGGTGTTCGAGAAGG GAGGAGTCTTGCTGGCCACCGCTGGCGACGACTCGTACGTTAAGGTGTGG GACCCGGGATCAGGGCGGCAGAGGGCGGCTCTCAAGGTGAGGGAGGTGTC AAGTCAGGTGTGGTGAGAAAGGGGACGAAGACTTCGGCGAAGATTTCCGA GATATATGTACGCAGATGTGCAGTGCAGAGATAGGGTGGGGGTGGGGGGG GTTGAGGAGGAGTGCGAGAGGAGAGGAGAGGTGTGGGGCGTGCGGTGGCT GGATGTCAGGTGTCAGGTGTGGTGAGCAAGGGGCCATGGCCTCGGCGAAG GTTTCTGAGATGGATGGGGTACACAGTAGGTGTAATTTTTTAGGAGGAGT GCGAGGTGAAAGGAGAGGTGCGGGGCGTGTAGTGGGTGCATGAAGAGGCG AGTGTTCTAATAGCGTTCCTTCCAAGTGGAACTGGCTGGGAGGTGAGGGT TTTGGCCGGGCTTTGGGGGGTCGCTCTTTGTTTCGCGTTTCTTATCCCTT ACGTTACGTACACGCCTCCGTAGATGCCCGCAGCCAAGGCGAAAAATAGA ATTAGCTTAGCTGGGATGCTGTACTTGTAGGGGCAGAGATGCTGCCGCAT GTTATACTCCAGCTATGATGTGCAGCTCTTTAGTTTTGATCAGAACCAAC CATCGTCCCTTTAGACGTCCGTTGTCGATTCTCTTGATTCGCTCCGAACC GGTGTGCTACATACCGGCTGTTTTATGCGTTGTTTCGAGACCGGGGCACA GCGACAGCGATGTTTGATACCATGCCACTAGCTTAGTGGTAGTGTCTTGA CCACCAGCATCCCCGTCGTCTATGTCGAACGGGGCTGGGATTGCGTTGAC AGGGCGCAGCTCACAAGGGGATGGCTGCAATGATCACCGTGGACATACAT GGGGATTTGGTGTGTGGCGGGGCTTCGGATGGCAGCTGCACGGTGTGGAG CCTTAGGACGTGCCGAGAACAGGCTCGGCTGACAGGCCACCAGCAAAAGG TTAGACCTCATGAGGTTAGACCTCACTCACTTGATTCACTTGCCCTATCA CTGATGTGAGACGTCAATCGATCACCTCGATAGTCATGTCATCGTTTGAT ATTTTCCCCGCCGAACATGTCGACATGTAGACTACTGATGTAGCTCTTGG TAATGTATCTTTTTGTACCACATGTTTTAAGAGAGAGAGGCTGCTAGTCA CTCGCTACTTGTCATGGTTTACCTCTACAGCACCAGTGAGCAGAGTGGTG ATTCTTGAACGATGATCATGATGGTGGTGGTGATACACGACAACGCTTGT GTGGTCAACGATGGGCTAAATGGTGCTTCTCGGTACTCTCAAAGGCTTTA CGGTTGAGTAAATGTGTCAGGTGGTACCTACCCGTTGACGAAACGATCGT ACAGGTTAGTAATAGTAATGCTGGCCATCCTTTGGCAGCTCGCAACGGCA ACGCGCATAATACGGGACACCTTCTATTATTCGAGTGATAACGATACCGT CGTTGACTACACTAAATTTGTGTTCTTGATACATAGGTGTGCGCGGTGTC ATTCTGCGATGCCGGACAACGCCTCGTCACCGGCAGCCAAGACTGCTCCA TCAAGGTACATACTGTTGTACGTTAATAACGTCGACGTCAACGGCATCGT ATGTTGCTTGTAGACGTGAAACACGAACGTGTTGCTGTCGCTACATATGT CATGGCTTAAGGCCCTGCTCTGGTGCTGTTAACGGCGTTTTTTTTCTCTG GAAGCGTGTGTTCAGGGTGAACCCGGTATTGCGCTTGAGCGATACCCGAA CTACGTAGTTCTCCAGTATGTATCCCTTCTGTCTGGTGTTTCGCGAACGC TGCCGCTGCTCAACAAAGTGTCGAGCGGGCTGGTGCGTTTGTTCGACGGT GGACTGACTGCTTCTCACCGCGTCCGTCATTTTCTCGGCCTTCCCCCTCC TAGTACAAGTAGCATGGTGTCGTAGTGATCGATTGCCTCACTGATGCCTG CCTACTGTTGTTGTGCCCGGCGATGGCTGTGGGAAGATGCCATTTTCACG GACTCAAAAACAGCTACAACGATACCTACAGCATGTCTAGTATCGTAGAG GTCCCGATACACTTATAGTGCCGGTGTTTTCTACGGGTATTGAACAGACT GACTCTATCATATCGCCAAGTCATCCTGTACTTTTATTAGGCCAAGTCAT CCTGTACTTTTACTAGTGCGGTGTCCGGTATAGTGCCATTTATTAAATGT TTTGTCAATAAAAGGCACATGCCGGCGCTAAACAGGGACCTCTCTCTACC GTAGATACAAGTACAAGTAGGAGTACAACCACCGCGGTGGCCAACGCATG AACGAACGCAACCCATTCTGTCCTTTGGGCGTTGGAAGGTTTGGGACCTG CACCGGGGGCAGTGGAACGCCGTGACCACGGCTATGCGGGCTACCTCCAA GTGCAACGCGGTGGACGTGAGCCACAGCTGGAAGGACTCCAAGGGGAACA ACGCTGTCGTCGTTTCCGGGCATATGGACGGCTCTGTACGGGTACGTGGT GCATGTACATGTATTATAGGAACCTACCTCACGCCTCGGTGTACACACAC GGTGTCTGTGTTTGTTATAGCTGGTACTAGCGGCGACAGCGCTTCCGGAA TGGCGAATGAAATAACGTCAGTCTTGTGGATCCGTCGTCGTCCCATCCAT TTTGTTTTGTCAGTTTCACGCTTTTCGATATGTGCATTGTATGCATAGAC TCACCAGCCGGGGTCAACACAGGGCAAAGCCACACTGTACATACCCGTAC TTGTAGGTATTGTTTTCCCCGTTCCTTTCGCGGTGTGTGAAATGGAGAGG TACTGGCATGCTTGAAAGGTGGCAATAGAGAAGGAGGGAGGACTTTCGAT CGTGTTGATTCGATCCATTCGTTAAGCTACCCTTTGCGTGGGGGAAAGCT ACAAGCCGCGGTATTGTGCATGACGTTAACTCAAATACACGTGAGCCAGC TTACACTGAAAGCGAAAGGTCTTCGGGATCGTGGGCGATAGCACTTGCTC GGGAGATGATTATAGTGGATGCAGGTCACAGCACGTGCTTCCTGTGACTT TTTTTATGTGAGAATTGTCTTACCGATCTTGTCGAGGCGTCTTCCCCGGC CGTTGGCGTGCCCCCTGTTCCTTTCCGTCGCCCTAACGTGCTATCCCTGC TCGGTGGCGTTCTTCCGAAAACACAACATCCATCACGTTCGGCACGATCA ACTCCATTTCCAGCTCTGGGACATGAGGTCTGGAAGCTGTGCGCATCAGT TGAAAGGACTACACACGGACCATGTGAGCTAGCCTCTAAAAGTTACAAAG GAATATGTCGGGAGTTTTGTGGTTTCACCGTTTCGAACTACATGCTTACA TGGAGAGATGAGGTGGTTTTGTGTGCCTGCACGTTTGTTTTAGCCGTCGA CTTGCTCGCCTAAACGGCTGTCTTCTCTGTTTCTCTCTGCCTTCTTGTCC CTCACTCCTTCGCTCTGTGTGTCTTCAAGTAAAAGTAACAACATCGCTTC ATCCGTGTGAGATTGTGTTCTTTCTGCATGTACTGTATGCCCCAGGTGAC TTCTGTCAGGTTTGCTCCAGGGAGAGGAAATCTCCTCCTCACTAACTCGA AAGACAGCTCTCTCAAGGTGAGACATTCTGTGAAGTGCTGCGGTGGGATG GTATGGCAGACCACGTGATATTCGTCGTCAAACTCACACGAAAGACGAAA GCTCAGACGGGATGGGAGGGTCGCTTCTGCAGTACGGCAGCGTATTGTTC CTGTTGCTCGACGCTACCCCGCCATGTTTCCCAGTCCCGAAAGGAGTTGG GGTAAATTACCGTTAGGCCCGGTCAGCAGTTTTGACGGTAAGGTGGACAT CTGATGCAGGAAACTCTCGTATGTTCGTAAGGCGCGCCTAGACTATTTCG TCGCATTCCAACGGACGGATGGATCTCTATTGCTTACATTCCGGCCAAAC TCTCACGTATAAATCCCCCCCGGTCTCCTCGGTGTGTTTGTGTCGCCAAC TTCTCGAGCTGTCTTGTCGACATTGATGACCTCGTTGATAGCCTCGTCAC CCCCTTTTCTTGATGCGGACGGACGGACCCTTCAGGTCGTAGACGCGCGG ATGTACCAGATGGTGGCGTGCCTCACCCACCCCAAGTTCCGCACAACCTC CAGCTTTTCCCGAGCCTGCTTCAGCCCGTCCGCGGCATACGCTGCCGCCG CCTCCGCGAACGGAAACGTCTACGTCTGGGACATCGCCCGCAGCAGCAGC AGCAGCAGCAGCGGTGGTGCTTCTGCTAGCGGAGCGGACGCAGTTGCCGC TGCGTCGCCGATGGCCGCAGGCACGTCAACTTCCTCATCGGTGGTGACGG TTTTGCAGACTCACGGCGTGCCGGCGTCGGGGTGCGACTGGTGCCTCAAC ATGCCGAGTACCCTATTAATAGCGTCGTGCGATTCCAAGGGCGGGTTGAG GGTGTGGGGGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7996:139..4901+

>mRNA_E_fasciculatus_S2_contig7996.16144.1 ID=mRNA_E_fasciculatus_S2_contig7996.16144.1|Name=mRNA_E_fasciculatus_S2_contig7996.16144.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1206bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7996:139..4901+ (Ectocarpus fasciculatus EfasUO2)
ATGGGCGGCGACAACGAACGTCCTGAAGCGGGAACCGCACCTTCTTGGCT
GTCCCAGGAGCAGCAACAGCTTGGCCATGATCCCTCCCAACAACCACATG
GTGAGGCGGACACGCCTTCCTCTTCGTGGGCATCTGGGTCACGGGCAAAG
GCGGGTCCCGCATCCGCGGGCTTGCCGAGCAGGTGCTTCCAGGCGATCGA
GGCTCACTCTGCCGGCGTGAACGGGGTGGTGTTCGAGAAGGGAGGAGTCT
TGCTGGCCACCGCTGGCGACGACTCGTACGTTAAGGTGTGGGACCCGGGA
TCAGGGCGGCAGAGGGCGGCTCTCAAGGGCGCAGCTCACAAGGGGATGGC
TGCAATGATCACCGTGGACATACATGGGGATTTGGTGTGTGGCGGGGCTT
CGGATGGCAGCTGCACGGTGTGGAGCCTTAGGACGTGCCGAGAACAGGCT
CGGCTGACAGGCCACCAGCAAAAGGTGTGCGCGGTGTCATTCTGCGATGC
CGGACAACGCCTCGTCACCGGCAGCCAAGACTGCTCCATCAAGGTTTGGG
ACCTGCACCGGGGGCAGTGGAACGCCGTGACCACGGCTATGCGGGCTACC
TCCAAGTGCAACGCGGTGGACGTGAGCCACAGCTGGAAGGACTCCAAGGG
GAACAACGCTGTCGTCGTTTCCGGGCATATGGACGGCTCTGTACGGCTCT
GGGACATGAGGTCTGGAAGCTGTGCGCATCAGTTGAAAGGACTACACACG
GACCATGTGACTTCTGTCAGGTTTGCTCCAGGGAGAGGAAATCTCCTCCT
CACTAACTCGAAAGACAGCTCTCTCAAGGTCGTAGACGCGCGGATGTACC
AGATGGTGGCGTGCCTCACCCACCCCAAGTTCCGCACAACCTCCAGCTTT
TCCCGAGCCTGCTTCAGCCCGTCCGCGGCATACGCTGCCGCCGCCTCCGC
GAACGGAAACGTCTACGTCTGGGACATCGCCCGCAGCAGCAGCAGCAGCA
GCAGCGGTGGTGCTTCTGCTAGCGGAGCGGACGCAGTTGCCGCTGCGTCG
CCGATGGCCGCAGGCACGTCAACTTCCTCATCGGTGGTGACGGTTTTGCA
GACTCACGGCGTGCCGGCGTCGGGGTGCGACTGGTGCCTCAACATGCCGA
GTACCCTATTAATAGCGTCGTGCGATTCCAAGGGCGGGTTGAGGGTGTGG
GGGTAG
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