mRNA_E_fasciculatus_S2_contig799.16139.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig799.16139.1
Unique NamemRNA_E_fasciculatus_S2_contig799.16139.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig799.16139.1 vs.
Match: Sept3, (septin GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI7_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.330e-25
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 MPPNTTVGTDPCMGSPAVSDPEAKDGGNATSVRVPGPPQQRLAPDQLRVMVAGESGLGK 177
            MPPNTTVGTDPCM SP V DP+AKDGGNA SVRVPGPPQQR  PDQLRVMVAGESGLGK
Sbjct:    1 MPPNTTVGTDPCMASPVVGDPQAKDGGNAPSVRVPGPPQQRPTPDQLRVMVAGESGLGK 59
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BLAST of mRNA_E_fasciculatus_S2_contig799.16139.1 vs.
Match: Septin-type (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBY2_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.200e-11
Identity = 38/60 (63.33%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 MPPNTTVGTDPCMGSPAVSDPEAKDGGNATSVRVPGPPQQRLAPDQLRVMVAGESGLGKA 180
            MPP+T + +D  MGSP V            SVRVPGPPQQ  APDQLRVMVAGESGLGKA
Sbjct:    1 MPPSTAMASDSGMGSPVVG----------ASVRVPGPPQQSQAPDQLRVMVAGESGLGKA 50
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BLAST of mRNA_E_fasciculatus_S2_contig799.16139.1 vs.
Match: Sept1, (septin GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE4_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.630e-11
Identity = 38/59 (64.41%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:    1 MPPNTTVGTDPCMGSPAVSDPEAKDGGNATSVRVPGPPQQRLAPDQLRVMVAGESGLGK 177
            MPPNTT+ TD  M SP V            SVRVPGPPQ+  APDQLRVMVAGESGLGK
Sbjct:    1 MPPNTTMATDSGMDSPVVG----------ASVRVPGPPQKSQAPDQLRVMVAGESGLGK 49
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig799.16139.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Sept3,1.330e-2588.14septin GTPase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
Septin-type1.200e-1163.33G domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
Sept1,1.630e-1164.41septin GTPase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig799contigE_fasciculatus_S2_contig799:508..687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score108.2
Seed ortholog evalue1.3e-21
Seed eggNOG ortholog2880.D7FUI7
Model size181
KEGG koko:K16944
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.ATPase. Has a role at an early stage in the morphogenesis of the spore coat
EggNOG OGsCOG5019@1,KOG2655@2759
Cds size180
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842458.5563242-CDS-E_fasciculatus_S2_contig799:507..6871696842458.5563242-CDS-E_fasciculatus_S2_contig799:507..687Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig799 508..687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig799.16139.1prot_E_fasciculatus_S2_contig799.16139.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig799 508..687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig799.16139.1

>prot_E_fasciculatus_S2_contig799.16139.1 ID=prot_E_fasciculatus_S2_contig799.16139.1|Name=mRNA_E_fasciculatus_S2_contig799.16139.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=60bp
MPPNTTVGTDPCMGSPAVSDPEAKDGGNATSVRVPGPPQQRLAPDQLRVM
VAGESGLGKA
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mRNA from alignment at E_fasciculatus_S2_contig799:508..687+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig799.16139.1 ID=mRNA_E_fasciculatus_S2_contig799.16139.1|Name=mRNA_E_fasciculatus_S2_contig799.16139.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=180bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig799:508..687+ (Ectocarpus fasciculatus EfasUO2)
ATGCCTCCTAATACAACCGTGGGGACTGACCCCTGCATGGGCTCCCCCGC
TGTGAGCGATCCTGAAGCCAAAGATGGTGGGAACGCCACCAGTGTGCGGG
TACCAGGACCTCCACAGCAAAGGCTAGCGCCGGACCAGCTACGAGTCATG
GTGGCGGGCGAGAGTGGGCTAGGCAAGGCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig799:508..687+

>mRNA_E_fasciculatus_S2_contig799.16139.1 ID=mRNA_E_fasciculatus_S2_contig799.16139.1|Name=mRNA_E_fasciculatus_S2_contig799.16139.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=180bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig799:508..687+ (Ectocarpus fasciculatus EfasUO2)
ATGCCTCCTAATACAACCGTGGGGACTGACCCCTGCATGGGCTCCCCCGC
TGTGAGCGATCCTGAAGCCAAAGATGGTGGGAACGCCACCAGTGTGCGGG
TACCAGGACCTCCACAGCAAAGGCTAGCGCCGGACCAGCTACGAGTCATG
GTGGCGGGCGAGAGTGGGCTAGGCAAGGCA
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