mRNA_E_fasciculatus_S2_contig7973.16130.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7973.16130.1
Unique NamemRNA_E_fasciculatus_S2_contig7973.16130.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7973.16130.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT8_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 5.220e-57
Identity = 93/98 (94.90%), Postives = 94/98 (95.92%), Query Frame = 1 
Query:    1 MSSALGRAAMVGARGLPAAGAGRRVGEVAARGRGLKTNPHVEEWMGKREISEKTFTFTPKVSLGLLMAVVVFPVVVYGNIKAGMETKDAKEGRKREYL 294
            MSSALGRA  VGARG PAAGAGRRVGEVAARGRGLKTNPHVEEWMGKREISEKTFTFTPKVSLGLLMA+VVFPVVVYGNIKAGMETKDAKEGRKREY 
Sbjct:    1 MSSALGRALSVGARGFPAAGAGRRVGEVAARGRGLKTNPHVEEWMGKREISEKTFTFTPKVSLGLLMAIVVFPVVVYGNIKAGMETKDAKEGRKREYF 98
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BLAST of mRNA_E_fasciculatus_S2_contig7973.16130.1 vs.
Match: Hypothetical (protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZX4_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 6.320e-15
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   97 RGLKTNPHVEEWMGKREISEKTFTFTPKVSLGLLMAVVVFPVVVYGNIKAGMETKDAKEGRKREYL 294
            RGLK N  VEEW GKREI+E+TFT+T + +  LLM + VFP  VY   K  +E +DA +G++REY+
Sbjct:   39 RGLKKNAFVEEWNGKREITEQTFTYTGQTTRSLLMWMGVFPAFVYVMTKGELEKRDASKGKRREYM 104
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BLAST of mRNA_E_fasciculatus_S2_contig7973.16130.1 vs.
Match: Uncharacterized (protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3B1_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 6.460e-5
Identity = 29/83 (34.94%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:   64 GRRVGEVAARGRGLKTNPHVEEWMGKREISEKTFTFTPKVSLGLLMAVVVFPVVVYGNIKAGMETK------DAKEGRKREYL 294
            G R+G+       ++ N  VEEW G+REI+EKTF F  K    L+   +VFP  +Y  +K  ++ K      + +EG  RE +
Sbjct:   15 GNRLGKKRQLSGLVEKNYFVEEWNGRREITEKTFKFNSKTVPSLIGLAIVFPGFIYYVMKDELKKKYEKLGYNTEEGGNREMM 97
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7973.16130.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized5.220e-5794.90protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT8... [more]
Hypothetical6.320e-1553.03protein n=2 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Uncharacterized6.460e-534.94protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7973contigE_fasciculatus_S2_contig7973:2983..4907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size297
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001290.1
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842457.5264304-CDS-E_fasciculatus_S2_contig7973:2982..31531696842457.5264304-CDS-E_fasciculatus_S2_contig7973:2982..3153Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7973 2983..3153 -
1696842457.5438628-CDS-E_fasciculatus_S2_contig7973:4781..49071696842457.5438628-CDS-E_fasciculatus_S2_contig7973:4781..4907Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7973 4782..4907 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7973.16130.1prot_E_fasciculatus_S2_contig7973.16130.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7973 2983..4907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7973.16130.1

>prot_E_fasciculatus_S2_contig7973.16130.1 ID=prot_E_fasciculatus_S2_contig7973.16130.1|Name=mRNA_E_fasciculatus_S2_contig7973.16130.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=99bp
MSSALGRAAMVGARGLPAAGAGRRVGEVAARGRGLKTNPHVEEWMGKREI
SEKTFTFTPKVSLGLLMAVVVFPVVVYGNIKAGMETKDAKEGRKREYL*
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mRNA from alignment at E_fasciculatus_S2_contig7973:2983..4907-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7973.16130.1 ID=mRNA_E_fasciculatus_S2_contig7973.16130.1|Name=mRNA_E_fasciculatus_S2_contig7973.16130.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1925bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7973:2983..4907- (Ectocarpus fasciculatus EfasUO2)
ATGTCTTCCGCTCTTGGTAGGGCTGCTATGGTGGGAGCACGGGGCCTCCC
TGCCGCGGGGGCAGGCCGGAGAGTGGGTGAAGTGGCGGCGAGGGGGAGAG
GATTGAAGACGAACCCGCACGTCGAGGTGAGCGAAGGGGTGCCAGCAGAG
CGGAGGGGAGAGTTGGCTGCTGTTCGAGTGTTGGTTGCGGAGTTGTGAAG
CGGCTGCGAGAGGCGAGTAGCTGTTCTCTCCTTTTCGTTGAGAGCGTGGT
GTTGGCACCCGTGCGTGTGCTTGTGCTTCCCCAGGCAGAACGAACAAGAG
GATTGGTGCCGAACAAACACGGGCATGCTGCCTGCCAACATGGTATGCAT
TTTGTGTGTTGTTGCGTCACTATTGTAAGCCCTATCCCTCATCTCTCGTG
CTTCCTGTTTCTGTCGTGAGACGCAAACATTCCATCGCTTAGCCTCTGAG
CCTTGGAGCACAGCAGTCTTTACCTTCCCAGGAGTGGTTGTCGTTCGATT
GTCACAATAGAGTCATCGTGCAACTTGTTTGCGAGATCGGCACCGGCTCA
GACACCCGTGTACGGAAACAACGGAGTTACACCGCTTCATGATGAGGCGG
TACAACTGGTACAACCGACGACTTTTAGGAGAGCTTACGAGTACAAGTAA
CTACTGGGAGGTGTAGCGTACAGCAGTAGTCGAGCTGGAGGGGATGTACT
GTAAAAAAACGTTGTTGGAACCTGTATGCATATTTGGTAAATCGTCTTGA
CCAATTCCACTGGCCTGCAATTTGGCCGTCTCTCCTCGCTGGTGGGCGGC
TGCTGTAGGTAGGAACAAAGCTGCTTCCCAGCCTATACTCCAAGATACAC
GTACCGATGTATTTCGCCGTGTTCAGCACACCATCCCAGCCATGCTGACG
GCCGCCAAGGTTTCATCATGTCGCGACGACAGCGATAGAGTCAGCGCCAC
CACTGCTGTTGTAGTTTAGTGTGCATGATACAACCGCGGCTGGCTCTCGG
ACATGGTGGTGCTCCATGCACGCGCGGCGAAATTAACCTCCGGCTCTGTC
CGTTGACGTACTTGATGGCGGCGGTGATCAGTGGGACGACTGGTATTCTC
ACTCTTGCCTTTGAAGAATACCCAGAGGGCCAGAGGAGGTAAAGATAAAG
TTGTAGACGCACACATATGCACAGGACAGACCATGAGCTACATACAGAAA
CAACACAGGTCACCGATTTCCTTCACATCACCATGGAGCAAATATACACA
GATCTCGTACGTCCTCCAGATCACCATAGGGCAAACACACACCGCTTCGT
GTTCAAAGTTCGCCGCTTTCTTTTTCGACACACACACAAAAAAGAAAATT
CAGCAAACCGCGAAGCGCAGACACACAAGAGACTCTACCCTGCACCGCTT
TCACACGGGCGCTCCACCACAGAAAATCGATCTCCAGTATGGCCCTTCAC
AGCAGTTTTTCAGACAGACAGTAGTGGTTTCATACATGGCATGGAACGCT
ACTGGTGGATTGGCCCCACCTGCATTGGGGTGCAAGCTTCTCGACCGTTG
CATTGAGAGCCCTAGGCCAGCGGTAGACACCGTTGTCCTGGTAGCCATGT
GCCCGACAAAGTTGGCTAATCCAGTAAGCATGGTGTTGAAGAGAAATATC
ATTGCAGTACGAAGAGAAATATCATTGCAGTACCCCCCTTTGACCCTCCC
CGCTGCTGGCTTGCCACCCGATGCGGTCCAACCGATGGGCGGGACGGCGC
ACAGGAGTGGATGGGGAAGCGAGAAATTTCTGAGAAGACGTTCACCTTCA
CGCCCAAGGTCTCCCTCGGACTCCTCATGGCCGTCGTCGTGTTCCCCGTG
GTAGTGTACGGGAACATCAAGGCCGGCATGGAGACCAAGGACGCTAAGGA
GGGGCGGAAACGAGAGTACTTGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7973:2983..4907-

>mRNA_E_fasciculatus_S2_contig7973.16130.1 ID=mRNA_E_fasciculatus_S2_contig7973.16130.1|Name=mRNA_E_fasciculatus_S2_contig7973.16130.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=297bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7973:2983..4907- (Ectocarpus fasciculatus EfasUO2)
ATGTCTTCCGCTCTTGGTAGGGCTGCTATGGTGGGAGCACGGGGCCTCCC
TGCCGCGGGGGCAGGCCGGAGAGTGGGTGAAGTGGCGGCGAGGGGGAGAG
GATTGAAGACGAACCCGCACGTCGAGGAGTGGATGGGGAAGCGAGAAATT
TCTGAGAAGACGTTCACCTTCACGCCCAAGGTCTCCCTCGGACTCCTCAT
GGCCGTCGTCGTGTTCCCCGTGGTAGTGTACGGGAACATCAAGGCCGGCA
TGGAGACCAAGGACGCTAAGGAGGGGCGGAAACGAGAGTACTTGTAA
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