mRNA_E_fasciculatus_S2_contig797.16125.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig797.16125.1
Unique NamemRNA_E_fasciculatus_S2_contig797.16125.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig797.16125.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.350e-9
Identity = 37/87 (42.53%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:  268 YRPVGERFMQGEEPAQSTEAQRSWVYSHDPVVKYHYEGVPLAPPPKGLSLDVGERPRA-ATANNKRSRSITLEREPATEKGTSVWID 525
            +RP+GER+    +P  +T AQRSW+YS DPVVKY  EGVP          D G      A  + +R RSIT   +P   +G +VW D
Sbjct:  149 HRPLGERYNADADPHCNTAAQRSWLYSLDPVVKYQQEGVPALEEGPCWVGDAGNALALHADGSARRVRSITARNDPMVTQGVTVWND 235
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig797.16125.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.350e-942.53protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig797contigE_fasciculatus_S2_contig797:11414..13934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size553
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_003595.1
Cds size552
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842456.944752-CDS-E_fasciculatus_S2_contig797:11413..115191696842456.944752-CDS-E_fasciculatus_S2_contig797:11413..11519Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig797 11414..11519 -
1696842456.9556797-CDS-E_fasciculatus_S2_contig797:12097..122451696842456.9556797-CDS-E_fasciculatus_S2_contig797:12097..12245Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig797 12098..12245 -
1696842456.96422-CDS-E_fasciculatus_S2_contig797:13126..132621696842456.96422-CDS-E_fasciculatus_S2_contig797:13126..13262Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig797 13127..13262 -
1696842456.973296-CDS-E_fasciculatus_S2_contig797:13772..139341696842456.973296-CDS-E_fasciculatus_S2_contig797:13772..13934Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig797 13773..13934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig797.16125.1prot_E_fasciculatus_S2_contig797.16125.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig797 11414..13934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig797.16125.1

>prot_E_fasciculatus_S2_contig797.16125.1 ID=prot_E_fasciculatus_S2_contig797.16125.1|Name=mRNA_E_fasciculatus_S2_contig797.16125.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=184bp
NRGFSPCPTSTGTTPFPCPSARQASLVNRAPEAETTTRAAFGVPKRACRT
GHKGLHVPEAPPGGRVESRTEMEEDASPDGRNPIQPKNRYRPVGERFMQG
EEPAQSTEAQRSWVYSHDPVVKYHYEGVPLAPPPKGLSLDVGERPRAATA
NNKRSRSITLEREPATEKGTSVWIDWHIAPGEA*
back to top

mRNA from alignment at E_fasciculatus_S2_contig797:11414..13934-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig797.16125.1 ID=mRNA_E_fasciculatus_S2_contig797.16125.1|Name=mRNA_E_fasciculatus_S2_contig797.16125.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2521bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig797:11414..13934- (Ectocarpus fasciculatus EfasUO2)
AACCGAGGTTTCTCCCCGTGTCCTACGTCCACTGGCACTACGCCTTTTCC
CTGCCCGTCCGCCCGGCAAGCCTCCCTGGTGAATCGAGCACCCGAGGCGG
AAACGACGACTCGCGCGGCGTTCGGAGTACCGAAGCGCGCCTGCAGGACG
GGGCACAAAGGGGTGAGCGAGGGGGCTACAAAGAGGAAGAGAGGCACGCA
CGGGAGAGCGGCCGTAGCCAGCGGCAGAGCAGTACGTGAGAAGAGGCCAA
AGTTTAAGCTTGACGTTCGCGTCGCTCGGTACAGGAATCGGTTGGGGCTC
TTTCAGAACACCGAAGCGTGTCTCGACTCGGCGTTATTCGAAAGGGCGCT
TTCTTGCAATGAAAACGAAAAAGCGCGCGTGGAAGCGGCCCACATGGTGA
AAGGCGGGGGCAGTGCTGTGGGGCCGGGACAGTTCTAAGCCAGCTGGTGT
GTCTGGGAAGAAAGCCCTGGCTCTATGCGTGTATCATGACTGCGGACAGC
AACACCGACCCCACCACGCCGTTTGCACGGACTCACACGGTAGAGGCAAG
TCATCGCCGTCGTCGTTGTCGTCGTCGTCATTGTTTCTGCGCCGCTGGTT
ACCGTTTTGTGTCACCGAAGAGACCCTGTTGCCCGTATCGTGGCTTACTG
CTATATTCCACGTGTGTGGCAGCTACACGTACCAGAAGCTCCTCCAGGTG
GACGGGTAGAGTCGAGGACGGAAATGGAGGAGGACGCCTCGCCTGACGGC
CGGAACCCGATCCAGCCGAAGAACCGCTACCGGCCAGTCGGCGAGAGGTT
CATGCAAGGTACAGCAGTACTTTGTAGAATCACTCGGAAAGCGACGAAAA
ACACTTCTTGATAAAATGTGGTCGGTCATGTTGCCGCGAGCGATGGTCGC
CTACCAAAGTTATAGAACCAGTTTTTTCACGGTGATGCGGTAGACTACTG
ATCAAAGGCCCGCATACACTCCAGAAGGGAGGTGAGGGGGCTACGAGAGA
CAGATTCGTCCATGCCTTCTCCCTGGCTCCACGAGGCCAAGGGAGAGAGA
TAGTCGGCATCCACGGCAAAAGTGCAAAAAATTACGTCCGACGTTTATCC
CCCAAGAGTTGGAGAGTCTCCCTGGTACGTTACCGCCATGCTCCTTACCT
CCCCCTCTCCTCGCTACTTCTACCACCACACGCATTGTCAACAACGTTAT
TCCATTGGTGGGGTTGCGACTGGCGCTATTAAACTAAAATATATATTGAC
GGGAAGCGTGGGGTTCTGGTGGGGTTCGAGGACGGACTCGGCCCCCACTT
GTCACCCCATCACACCGAACCAACACTAACATTTTTTATGAGAGATAGGG
GCGGTACCAACTCATCCCCCGGAAAATAAACGTCAATGATTGCCGTTGCG
ACTGGTTGCGGTTGACGGAGGGATTGAGCAGGAAAGGATCGAGACCAAAG
CGCACCCAGGTACAACCACCCGATCGTGTTTAACCCAAGCATCACCCAAT
TAACAAAACAAATCAGGAAACGAAGCTAAATTAATTTTTACATAATCAAA
TTTTTGTTTTAAATTTTTCATTTTTTATATAAATATTTTTATTTTTAAAT
TTTAACCCCCCCCCCCAAGATGCGTTCGATCATCAAGCCTAAGCGCCTCC
TAAGCGCCTAAGCAACTCTGTCCCGCGCACGCGACACAGGCGAGGAACCC
GCCCAGAGCACGGAGGCCCAGCGCTCGTGGGTGTACTCGCACGACCCAGT
AGTCAAGTACCACTACGAAGGAGTGCCGCTCGCGCCCCCTCCCAAGGGGC
TCAGCCTTGACGTTGGAGAAAGGCCTAGAGCCGCCACGTAAGCAAGGAGG
GTGGGGGTTCGTTTTGAAAAACATCGACGCCCTTAGTAAAGTTAGAATTG
CTCTCACACTACCATTCCGCACATACATGCAGAAACGGCGTGTATTGTAC
GCCGAAACAGCGCTTGGATGCAAGAGCGTACGCTACACCACGAGAACCGC
ACTCCGTAAGCCAGCGCGTGAGGCTGAGGCTCGGTTCGGCGACGAGCTGG
GCGGTTGAGTGTGGATTGGTACAGCTTCTTTGCTGCCGGCGGTCGCTGTC
TCCAGAACGCGTTTCTGTCGCAAGGACCATTCGTTGTTGGGCGTTCGTCT
ACTCACTTTCATTTCTGACCGTGGTTTTCGACGACGAGCCATTGGGATTG
ACCTGTAGCGATTAAGCCATCGAGATGATACATTGTCGCATCGCCCCAGA
GTCTCGTTTTCGTTCGGCAGTACCGGTTCCAGGAAGCCACCCCCACCCCT
CCAAAACAAAAATCTTCCACCACCTGCAAGCCCTAGTCTTTGTTCCTCTC
ATGTGCCTCAGGGAGGGCAGACATAGACCAACAAATATCATGCGCCTTTC
GTGTGTCATCCACAGCGCAAACAACAAGCGTTCGCGGAGCATTACCCTGG
AGCGCGAGCCCGCCACCGAGAAGGGGACCAGCGTGTGGATCGACTGGCAC
ATCGCCCCTGGGGAAGCGTAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig797:11414..13934-

>mRNA_E_fasciculatus_S2_contig797.16125.1 ID=mRNA_E_fasciculatus_S2_contig797.16125.1|Name=mRNA_E_fasciculatus_S2_contig797.16125.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=552bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig797:11414..13934- (Ectocarpus fasciculatus EfasUO2)
AACCGAGGTTTCTCCCCGTGTCCTACGTCCACTGGCACTACGCCTTTTCC
CTGCCCGTCCGCCCGGCAAGCCTCCCTGGTGAATCGAGCACCCGAGGCGG
AAACGACGACTCGCGCGGCGTTCGGAGTACCGAAGCGCGCCTGCAGGACG
GGGCACAAAGGGCTACACGTACCAGAAGCTCCTCCAGGTGGACGGGTAGA
GTCGAGGACGGAAATGGAGGAGGACGCCTCGCCTGACGGCCGGAACCCGA
TCCAGCCGAAGAACCGCTACCGGCCAGTCGGCGAGAGGTTCATGCAAGGC
GAGGAACCCGCCCAGAGCACGGAGGCCCAGCGCTCGTGGGTGTACTCGCA
CGACCCAGTAGTCAAGTACCACTACGAAGGAGTGCCGCTCGCGCCCCCTC
CCAAGGGGCTCAGCCTTGACGTTGGAGAAAGGCCTAGAGCCGCCACCGCA
AACAACAAGCGTTCGCGGAGCATTACCCTGGAGCGCGAGCCCGCCACCGA
GAAGGGGACCAGCGTGTGGATCGACTGGCACATCGCCCCTGGGGAAGCGT
AG
back to top