mRNA_E_fasciculatus_S2_contig797.16122.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig797.16122.1
Unique NamemRNA_E_fasciculatus_S2_contig797.16122.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig797.16122.1 vs.
Match: Cupin-like (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI)

HSP 1 Score: 434 bits (1117), Expect = 9.480e-154
Identity = 218/227 (96.04%), Postives = 224/227 (98.68%), Query Frame = 1
Query:    1 MKTSFCAAAGLVMAAGLMSSTAQASGVVTAQQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGENLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPNEAIQASLNFEDPALQALIESLPEAPAAARRQCLEMCGLADGGDGFSYSFGY 681
            MKTSFC+AAGLV+AAG MSSTAQASGVVTAQQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGE+LRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELP+EAIQASLNFEDPALQ LIESLP+APAAARRQCLE CGLADGGDGFSYS+GY
Sbjct:    1 MKTSFCSAAGLVVAAGFMSSTAQASGVVTAQQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPSEAIQASLNFEDPALQRLIESLPDAPAAARRQCLERCGLADGGDGFSYSYGY 227          
BLAST of mRNA_E_fasciculatus_S2_contig797.16122.1 vs.
Match: Cupin (type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE)

HSP 1 Score: 356 bits (914), Expect = 1.040e-122
Identity = 177/227 (77.97%), Postives = 199/227 (87.67%), Query Frame = 1
Query:    1 MKTSFCAAAGLVMAAGLMSSTAQASGVVTAQQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGENLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPNEAIQASLNFEDPALQALIESLPEAPAAARRQCLEMCGLADGGDGFSYSFGY 681
            MKTSFCAAAG V+AAGLMS+  Q  GVVT QQQIT++NPEDFVF+LGGPEPDA VDGFQ+R A + Q+PALDGQGI+M LVNLD C INLPHIHPRATEM YVI GE LRVAFVEENGGEGAVVNDL+QGDV FFPQGLIHY+QNL CEP TFLAALNN+DPGA+TITTRFFELP EAIQAS+NFE+P LQ LIESLP+APAAAR+QCL+ C +A+ G+ FSY + Y
Sbjct:    1 MKTSFCAAAGFVIAAGLMSAV-QVCGVVTVQQQITLYNPEDFVFSLGGPEPDALVDGFQLRTAVVNQLPALDGQGISMGLVNLDPCAINLPHIHPRATEMVYVIKGEQLRVAFVEENGGEGAVVNDLAQGDVAFFPQGLIHYQQNLDCEPATFLAALNNEDPGAITITTRFFELPLEAIQASVNFEEPVLQNLIESLPDAPAAARQQCLQRCRMAEPGNHFSYDYTY 226          
BLAST of mRNA_E_fasciculatus_S2_contig797.16122.1 vs.
Match: Cupin (type-1 domain-containing protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FDZ0_9FUNG)

HSP 1 Score: 171 bits (432), Expect = 2.190e-49
Identity = 93/188 (49.47%), Postives = 119/188 (63.30%), Query Frame = 1
Query:   85 TAQQQITMFNPEDFVFTL-GGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGENLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPNEAIQASLNFE-DPALQALIESLPEAPAAARRQCLEMCGL 642
            T  Q++  FN EDF+  L   P+      G  +    LG +PAL  QG+AM L+NL+ C  NLPH+HPRA+E  YVI G N++V F+EENG +  +VNDL QG  TF PQG IHY+ NLGCE    +AA NN+DPG +TI  +FF+LP+ AI ASL    DP ++AL  SLP  PA    +CL  CG 
Sbjct:   37 TEVQRMKQFNHEDFITDLLHNPKSTEVGKGGSLAKMNLGSMPALARQGLAMVLINLNPCGANLPHVHPRASEAIYVIQG-NVQVGFIEENGAK-VIVNDLVQGQATFIPQGSIHYQVNLGCEQAVMIAANNNEDPGTLTIPAQFFKLPDGAIAASLGGTLDPEIRALNGSLPMNPAPGVEECLRRCGF 222          
BLAST of mRNA_E_fasciculatus_S2_contig797.16122.1 vs.
Match: Cupin-like (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ3_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 2.540e-47
Identity = 83/99 (83.84%), Postives = 89/99 (89.90%), Query Frame = 1
Query:    1 MKTSFCAAAGLVMAAGLMSSTAQASGVVTAQQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATE 297
            MKT FCAAAG V+AAGLMSST QASGVVTAQQQIT+FNPEDFVF+LGGPEPDA VDGFQIR   + Q+PALDGQGI+MALVNLD C INLPHIHPRATE
Sbjct:    1 MKT-FCAAAGFVIAAGLMSSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 98          
BLAST of mRNA_E_fasciculatus_S2_contig797.16122.1 vs.
Match: Cupin-like (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI68_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 2.530e-46
Identity = 82/100 (82.00%), Postives = 89/100 (89.00%), Query Frame = 1
Query:    1 MKTSFCAAAGLVMAAGLMSSTAQASGVVTAQQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEM 300
            MKT FCAAAG V+AAGLM ST QASGVVTAQQQIT+FNPEDFVF+LGGPEPDA VDGFQIR   + Q+PALDGQGI+MALVNLD C INLPHIHPRATE+
Sbjct:    1 MKT-FCAAAGFVIAAGLMPSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATEV 99          
BLAST of mRNA_E_fasciculatus_S2_contig797.16122.1 vs.
Match: RmlC-like (cupin n=2 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165BNY0_EXIGL)

HSP 1 Score: 142 bits (357), Expect = 1.970e-38
Identity = 91/206 (44.17%), Postives = 114/206 (55.34%), Query Frame = 1
Query:   37 MAAGLMSSTAQASGVVTAQQQITMFNPE-DFVFTLGGPEPDAPVDGF--QIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGENLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPNEAIQASLN-FEDPALQALIESLPEAPAAARRQCLEMCGL 642
            MAA L S   QA+   T  Q+I++   + DFVF    P     V G       A     PAL G G+AM L  LDAC+IN PH HPRATE   V+NG  LR  F+ ENG    ++ND+     T FPQG IH+E NLGCEPV F+AA NN+DPG + I  RFF LP   I ASL       ++ L   +P+  A   ++C + CGL
Sbjct:    1 MAAVLPSELQQAA---TQVQRISLLKDDADFVFNFIDPSKPLEVVGAGGHTTHAARDTFPALVGTGMAMTLGFLDACSINTPHTHPRATEFNLVMNG-TLRAGFLAENGAR-FIMNDVPALSATIFPQGAIHFEANLGCEPVIFIAAFNNEDPGVLQIAQRFFGLPGSVIGASLGGLGVEEIEKLAGLIPDNIALGVKECFDHCGL 201          
BLAST of mRNA_E_fasciculatus_S2_contig797.16122.1 vs.
Match: Cupin (type-1 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EJ88_VITBC)

HSP 1 Score: 144 bits (363), Expect = 2.880e-38
Identity = 76/175 (43.43%), Postives = 101/175 (57.71%), Query Frame = 1
Query:  124 FVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGENLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPNEAIQASLNFEDPALQALIESLPEAPAAA--RRQCLEMCGL 642
            F F     E D    G  +  A++ Q PAL G G++  LV+L  C+IN PH+HPRATE+ Y+I G  + V F EENGG   V ND+ +GD  FFP  LIH++ N  CEP  F+A LN+DD G  TI   FF LP++ +  +L  ++  +  L E LP  PA    R +C   CGL
Sbjct:  147 FDFNTARAEADTNGQGGAVTGASVSQWPALSGHGLSHTLVDLAPCSINTPHVHPRATEIIYIIKGR-VSVGFAEENGGR-IVTNDVKEGDTAFFPHTLIHWQFNPTCEPAQFIATLNSDDGGVQTIAQAFFGLPDDVLATALGVDEYEVAVLREELPAGPALGLQREECRRKCGL 319          
BLAST of mRNA_E_fasciculatus_S2_contig797.16122.1 vs.
Match: Cupin (type-1 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FMH1_VITBC)

HSP 1 Score: 142 bits (358), Expect = 4.390e-38
Identity = 71/185 (38.38%), Postives = 106/185 (57.30%), Query Frame = 1
Query:   85 TAQQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGENLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPNEAIQASLNFEDPALQALIESLPEAPAAARRQCLEMCG 639
            TA +  + F  EDFVF L   +      G ++R A +  +P+L G G++ AL  L  C +N   +HPRATE+ YVIN   L V FVEENGG   + N L  G ++F P+GL+H+  N GCE   FL+  N++DPG +TI    F++ + ++QA+ N +   +  +  S+P +P     +CL  CG
Sbjct:   33 TALKFRSQFKTEDFVFNLAAAKAGDAGKGGELRVAAVAAMPSLAGNGVSQALYRLYPCGMNSVQMHPRATELFYVINATELHVGFVEENGGR-TIENVLKTGQLSFVPKGLLHWHYNAGCEDAIFLSTFNHEDPGVLTIVNALFDINSTSLQAAFNVDADQIADIKSSIPASPVPGIAECLAKCG 216          
BLAST of mRNA_E_fasciculatus_S2_contig797.16122.1 vs.
Match: RmlC-like (cupin n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DF28_9FUNG)

HSP 1 Score: 140 bits (354), Expect = 7.290e-38
Identity = 79/190 (41.58%), Postives = 113/190 (59.47%), Query Frame = 1
Query:   82 VTAQQQITMFNPEDFVFTLGGPEPDAPV-DGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGENLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFE-LPNEAIQASLN-FEDPALQALIESLPEAPAAARRQCLEMCGL 642
            +T  Q++++ + +DFVF     +    + DG +  AAT    PAL G  IAM +  +  C+INLPHIHPRATE+ ++  G+     F EENG    +VN L +G+VT FP G IH+EQNL CEP  F+AA N++DPG  TI + F   LP + + ASL       ++ L + LP+ PA   ++C + CGL
Sbjct:   46 ITETQRLSLLDNKDFVFNFLTSKTGVSMGDGGRTVAATAANFPALIGHNIAMTVGFIGPCSINLPHIHPRATEINFIAQGK-FEAGFFEENGAR-FIVNTLHKGEVTVFPMGAIHFEQNLNCEPAVFVAAFNSEDPGVSTIGSNFIGGLPADIVSASLRGLSIEQVKELTKYLPKNPAIGIQECRKRCGL 233          
BLAST of mRNA_E_fasciculatus_S2_contig797.16122.1 vs.
Match: Cupin (type-1 domain-containing protein n=2 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EA80_VITBC)

HSP 1 Score: 140 bits (354), Expect = 1.820e-37
Identity = 74/186 (39.78%), Postives = 105/186 (56.45%), Query Frame = 1
Query:   85 TAQQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGENLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPNEAIQASLNFEDPALQALIESLPEAPAAARRQCLEMCGL 642
            TA +  + F    FVF L    P     G ++R A +G +P+L G G++  L  L  C +N   +HPRA+E+ YVIN   L V FVEENGG   V N L  G ++F P+GL+H+  N GCE   FL+  N++DPG VTI    F++   ++QA+LN +   +  L  S+P +P     +CL  CGL
Sbjct:   34 TALKFRSQFGSSQFVFDLARMSPVDAGKGGELRKADVGSMPSLAGNGVSQVLYRLYPCGMNSVQMHPRASELFYVINATELVVGFVEENGGR-TVENTLKTGQLSFVPKGLMHWHYNAGCEDAVFLSTFNHEDPGVVTIVNALFDINATSLQAALNVDRALVADLKTSVPPSPVPGIAECLRRCGL 218          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig797.16122.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Cupin-like9.480e-15496.04protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Cupin1.040e-12277.97type-1 domain-containing protein n=6 Tax=Ectocarpu... [more]
Cupin2.190e-4949.47type-1 domain-containing protein n=2 Tax=Chytriomy... [more]
Cupin-like2.540e-4783.84protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Cupin-like2.530e-4682.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
RmlC-like1.970e-3844.17cupin n=2 Tax=Exidia glandulosa HHB12029 TaxID=131... [more]
Cupin2.880e-3843.43type-1 domain-containing protein n=2 Tax=Vitrella ... [more]
Cupin4.390e-3838.38type-1 domain-containing protein n=1 Tax=Vitrella ... [more]
RmlC-like7.290e-3841.58cupin n=2 Tax=Jimgerdemannia flammicorona TaxID=99... [more]
Cupin1.820e-3739.78type-1 domain-containing protein n=2 Tax=Vitrella ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig797contigE_fasciculatus_S2_contig797:2944..4962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score439.1
Seed ortholog evalue1.2e-120
Seed eggNOG ortholog2880.D8LDW6
Model size684
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.nutrient reservoir activity
EggNOG OGs2BYKQ@1,2QQ4A@2759
Cds size684
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842456.8022122-CDS-E_fasciculatus_S2_contig797:2943..30871696842456.8022122-CDS-E_fasciculatus_S2_contig797:2943..3087Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig797 2944..3087 -
1696842456.8196602-CDS-E_fasciculatus_S2_contig797:3285..35281696842456.8196602-CDS-E_fasciculatus_S2_contig797:3285..3528Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig797 3286..3528 -
1696842456.8308299-CDS-E_fasciculatus_S2_contig797:4325..45291696842456.8308299-CDS-E_fasciculatus_S2_contig797:4325..4529Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig797 4326..4529 -
1696842456.841422-CDS-E_fasciculatus_S2_contig797:4869..49621696842456.841422-CDS-E_fasciculatus_S2_contig797:4869..4962Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig797 4870..4962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig797.16122.1prot_E_fasciculatus_S2_contig797.16122.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig797 2944..4962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig797.16122.1

>prot_E_fasciculatus_S2_contig797.16122.1 ID=prot_E_fasciculatus_S2_contig797.16122.1|Name=mRNA_E_fasciculatus_S2_contig797.16122.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=228bp
MKTSFCAAAGLVMAAGLMSSTAQASGVVTAQQQITMFNPEDFVFTLGGPE
PDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEM
QYVINGENLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEP
VTFLAALNNDDPGAVTITTRFFELPNEAIQASLNFEDPALQALIESLPEA
PAAARRQCLEMCGLADGGDGFSYSFGY*
back to top

mRNA from alignment at E_fasciculatus_S2_contig797:2944..4962-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig797.16122.1 ID=mRNA_E_fasciculatus_S2_contig797.16122.1|Name=mRNA_E_fasciculatus_S2_contig797.16122.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2019bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig797:2944..4962- (Ectocarpus fasciculatus EfasUO2)
ATGAAGACCTCCTTCTGCGCTGCAGCTGGACTTGTCATGGCCGCTGGGCT CATGTCGTCTACGGCGCAGGCTTCCGGCGTCGTCACTGCGCAGGTATAGA CAGTATAGGAGCCTACGAAGTGCTTTAGATACACTGCTCCTCTACGCGAT GTACGGACGATGGTAGAGGCTATGTATTGTGGTCCAAGTTCCCCTGCGAC CACTGGACTCCCTAACATATGAGAGTGTAAAAGTATCGGCATGCACATCA TTTTCGGGTCTTGGGTCGGCCCGATTCTCTATGAAAAAGAGATGCTACCA TGTACGTGTAGACCAAGCCCCCTGTGTTTTTCGATTCGCCAGTACATGCA TTGACTCCCTCAGTGCCGCAGAAAGCTCGACAATGCCCAACTGATTTGAT GCTGCCCTTCGTGCTCCCCCCTCGTGCCTTCAGCAACAAATCACCATGTT CAACCCCGAGGACTTCGTGTTCACCCTCGGCGGTCCTGAGCCCGATGCCC CGGTGGACGGCTTCCAGATCCGTGCGGCCACCCTCGGTCAGATCCCTGCT CTGGATGGGCAAGGCATTGCGATGGCCCTCGTCAACCTCGACGCGTGCAC CATCAACCTCCCTCACATCCACCCGCGTGCCACGGAGGTGAATGACTCTG CATGGCATCCGGAATGCTCTGGCTTACAACTTCACTCGGAAAGAACGCCT GTGTGGCCCATGTCCCACGCTGTACAGTAGGGCGTGGTCGAAAACGTACC GAGAATCGATTTGTGAAATGACGTTGAATGCGCCGTGCAGACTGTGAGAT GCGAACCGATGGGGGATTCGACTACTGCTATACATTGATGCCCATGAGCT ACATTGTTCGCCCTCCCGGAAGAGATCTATTGTAGAACACAATCGTGCAA CACGTACCGTCAGTGTGGACAGTCTTTATATCGCACCCCCGTGCCATATA GCACCGATGCCGGCGCGGAAACGTCATTGAATCATATCAATCCACCCCCG GTACGATGACACCATTCGGTGCGATACGGAAAATAAAAAAACAGTGACCC CTTTCTCAAATACCATATGCGTGCGCATCGACGGTTCGATATACATGTTG AATGGCTTTGCGCCCCCATTGAAACCTACCGGCACCCTCACAGCCGCGCA CTAAATTCAGTGAAAGGTGGCGTGGATGGCAACGGTACCATGTGGAAGAA AATGCCTTTCAGGTTCTAGACTGTAGACTATCGTTGATATCGCATGGGCG GCTATAGCACCGGTACCGGTGCGTAATGTTGCATCATCCCGTTTGATGTT GTTGCGTACCCCGGTGCCATAAATGTTATGACCGATGAGTGCTATAAACA CACAAGAAATGTTTTGTACATTGTGCTCGAAGATCCCCGAGTCTTGGCCA CCCAACCGTTAAACTCGAAACCCACTCTTCACAGATGCAATACGTCATCA ACGGCGAGAACCTCCGGGTGGCATTCGTGGAGGAGAACGGCGGTGAGGGG GCCGTCGTCAACGACCTTTCCCAAGGGGACGTGACATTCTTTCCTCAGGG ACTCATCCACTACGAACAGAACCTTGGCTGCGAGCCGGTGACGTTCCTGG CCGCCCTTAACAACGACGACCCCGGTGCGGTTACGATCACGACGCGCTTC TTCGAGCTGCCGAACGAGGCCATCCAGGTGCGTGCGTGCCCTTCCGTTCA GGGGTGTCATTGCTCACTTTTCTTTGGCCCTTGGTTGCGCCCTTCATAAT GAAAATGTGTCGCAGTTACTCCCGGGGCAGTGCTTGTCGCATTCGCCGAA CCCTCCTTCCACGGACCGCTCTTACCCTTGGTATCCCCGGTTTCCATTAA TTGCTTTCAACTCTGAATCCCGCAGGCTTCGTTGAACTTCGAAGATCCTG CTCTCCAGGCCCTGATTGAGTCACTCCCTGAAGCTCCGGCGGCGGCTCGC CGCCAATGCCTTGAGATGTGCGGGCTGGCTGACGGGGGCGATGGCTTCAG CTACAGCTTCGGATATTAA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig797:2944..4962-

>mRNA_E_fasciculatus_S2_contig797.16122.1 ID=mRNA_E_fasciculatus_S2_contig797.16122.1|Name=mRNA_E_fasciculatus_S2_contig797.16122.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=684bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig797:2944..4962- (Ectocarpus fasciculatus EfasUO2)
ATGAAGACCTCCTTCTGCGCTGCAGCTGGACTTGTCATGGCCGCTGGGCT
CATGTCGTCTACGGCGCAGGCTTCCGGCGTCGTCACTGCGCAGCAACAAA
TCACCATGTTCAACCCCGAGGACTTCGTGTTCACCCTCGGCGGTCCTGAG
CCCGATGCCCCGGTGGACGGCTTCCAGATCCGTGCGGCCACCCTCGGTCA
GATCCCTGCTCTGGATGGGCAAGGCATTGCGATGGCCCTCGTCAACCTCG
ACGCGTGCACCATCAACCTCCCTCACATCCACCCGCGTGCCACGGAGATG
CAATACGTCATCAACGGCGAGAACCTCCGGGTGGCATTCGTGGAGGAGAA
CGGCGGTGAGGGGGCCGTCGTCAACGACCTTTCCCAAGGGGACGTGACAT
TCTTTCCTCAGGGACTCATCCACTACGAACAGAACCTTGGCTGCGAGCCG
GTGACGTTCCTGGCCGCCCTTAACAACGACGACCCCGGTGCGGTTACGAT
CACGACGCGCTTCTTCGAGCTGCCGAACGAGGCCATCCAGGCTTCGTTGA
ACTTCGAAGATCCTGCTCTCCAGGCCCTGATTGAGTCACTCCCTGAAGCT
CCGGCGGCGGCTCGCCGCCAATGCCTTGAGATGTGCGGGCTGGCTGACGG
GGGCGATGGCTTCAGCTACAGCTTCGGATATTAA
back to top