mRNA_E_fasciculatus_S2_contig7957.16113.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7957.16113.1
Unique NamemRNA_E_fasciculatus_S2_contig7957.16113.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7957.16113.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWH1_ECTSI)

HSP 1 Score: 424 bits (1090), Expect = 3.460e-142
Identity = 223/230 (96.96%), Postives = 226/230 (98.26%), Query Frame = 2 
Query:  227 SVPAGVRHRAGAATSTAGRGPPPSTPASRARHDQP--RKVFLVYWAVCFATAITWLFAVAAASDDAWLQFEGYPLLKLGERCEFSASFCDYYKTGTAFQFFAAIVISATVVVMIVAAFKPAPATGRLGAAAGTMLLVFSVLQLAAFSIMAASAGRLNRDNDNYFQIKAGPTIGVAVIAWVFGLAGGSAILFLRPHATPGQDGPLRRFSRREGVRSAPRPRAPTSPSGVTI 910
            +VPAGVRHRAGAA STAGRGPPPSTPASRAR+DQP  RKVFLVYWAVCFATAITWLFAVAAASDDAWLQFEGYPLLKLGERCEFSASFCDYYKTGTAFQFFAAIVISATVVVMIVAAFKPAPATGRLGAAAGTMLLVFSVLQLAAFSIMAASAGRLNRDNDNYFQIKAGPTIGVAVIAWVFGLAGGSAIL LRPHATPGQDGPLRRFSRREGVRSAPRPRAP+SPSGVTI
Sbjct:    6 AVPAGVRHRAGAAPSTAGRGPPPSTPASRARNDQPKQRKVFLVYWAVCFATAITWLFAVAAASDDAWLQFEGYPLLKLGERCEFSASFCDYYKTGTAFQFFAAIVISATVVVMIVAAFKPAPATGRLGAAAGTMLLVFSVLQLAAFSIMAASAGRLNRDNDNYFQIKAGPTIGVAVIAWVFGLAGGSAILLLRPHATPGQDGPLRRFSRREGVRSAPRPRAPSSPSGVTI 235
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BLAST of mRNA_E_fasciculatus_S2_contig7957.16113.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD07_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.930e-22
Identity = 59/109 (54.13%), Postives = 73/109 (66.97%), Query Frame = 2 
Query:  350 YWAVCFATAI-TWLFAVAAASDDAWLQFEGYPLLKLGERCEFSASFCDYYKTGTAFQFFAAIVISATVVVMIVAAFKPAPATGRLGAAAGTMLLVFSVLQLAAFSIMAA 673
            YW V F T I TW+FAVAAA+DDAW+  + Y    LGE C+    FC  YK  TAFQ+ A IV+S  +V+++VAAF PAP TG+LG A G ML VF+V +L AF   AA
Sbjct:    9 YWIVLFVTTIFTWIFAVAAAADDAWIA-DAYEA-GLGESCD-GYDFCGLYKAATAFQYLATIVVSVVLVMVVVAAFTPAPVTGKLGLAVGIMLFVFAVFELLAFCTYAA 114
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7957.16113.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.460e-14296.96protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.930e-2254.13protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7957contigE_fasciculatus_S2_contig7957:473..5810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score62.4
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog2880.D7FMJ4
Model size2121
Hectar predicted targeting categorysignal anchor
Exons6
EggNOG free text desc.Poly(ADP-ribose) polymerase catalytic domain
EggNOG OGs2E27R@1,2S9G0@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_006640.1
Cds size693
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7957.16113.1prot_E_fasciculatus_S2_contig7957.16113.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7957 1681..5345 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842455.9126225-UTR-E_fasciculatus_S2_contig7957:472..16801696842455.9126225-UTR-E_fasciculatus_S2_contig7957:472..1680Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7957 473..1680 -
1696842455.9980836-UTR-E_fasciculatus_S2_contig7957:5345..54861696842455.9980836-UTR-E_fasciculatus_S2_contig7957:5345..5486Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7957 5346..5486 -
1696842456.0093443-UTR-E_fasciculatus_S2_contig7957:5731..58101696842456.0093443-UTR-E_fasciculatus_S2_contig7957:5731..5810Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7957 5732..5810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842455.9287636-CDS-E_fasciculatus_S2_contig7957:1680..19071696842455.9287636-CDS-E_fasciculatus_S2_contig7957:1680..1907Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7957 1681..1907 -
1696842455.9384873-CDS-E_fasciculatus_S2_contig7957:2314..25061696842455.9384873-CDS-E_fasciculatus_S2_contig7957:2314..2506Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7957 2315..2506 -
1696842455.9494855-CDS-E_fasciculatus_S2_contig7957:3159..33161696842455.9494855-CDS-E_fasciculatus_S2_contig7957:3159..3316Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7957 3160..3316 -
1696842455.9653263-CDS-E_fasciculatus_S2_contig7957:3986..40701696842455.9653263-CDS-E_fasciculatus_S2_contig7957:3986..4070Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7957 3987..4070 -
1696842455.9840555-CDS-E_fasciculatus_S2_contig7957:5312..53451696842455.9840555-CDS-E_fasciculatus_S2_contig7957:5312..5345Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7957 5313..5345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7957.16113.1

>prot_E_fasciculatus_S2_contig7957.16113.1 ID=prot_E_fasciculatus_S2_contig7957.16113.1|Name=mRNA_E_fasciculatus_S2_contig7957.16113.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=231bp
MSSVPAGVRHRAGAATSTAGRGPPPSTPASRARHDQPRKVFLVYWAVCFA
TAITWLFAVAAASDDAWLQFEGYPLLKLGERCEFSASFCDYYKTGTAFQF
FAAIVISATVVVMIVAAFKPAPATGRLGAAAGTMLLVFSVLQLAAFSIMA
ASAGRLNRDNDNYFQIKAGPTIGVAVIAWVFGLAGGSAILFLRPHATPGQ
DGPLRRFSRREGVRSAPRPRAPTSPSGVTI*
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mRNA from alignment at E_fasciculatus_S2_contig7957:473..5810-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7957.16113.1 ID=mRNA_E_fasciculatus_S2_contig7957.16113.1|Name=mRNA_E_fasciculatus_S2_contig7957.16113.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5338bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7957:473..5810- (Ectocarpus fasciculatus EfasUO2)
ACTGACCCTCTAGTCTCGCGGCCGCGCTAGCGGCAGCCTGGGCCGGATAG
AATCCCGGTACGTGGACGGCGCATGCCCGGTGAGCGAAGAGCTCTGCAAG
ATCGCCCTGCTTGAGGAAAGAGCGAGTGATTACGTCGACGGACGGGTCTT
CGAACAGGTCCTTGATGCACCCAAACCGACGCTCGAGCTCCCTAGCAAAA
AGCGCAACACCATCTCGCCTCTCCGACGTTGCCAAAAGCCCACCTAGCTC
CCTTGCGCGCTTCATCTCCGCCTACCTGCACTCTTTGCGCGTAAATTTAT
TTTTCTTGCATCTTGCTCGTGAAGGCATCACCCGGACCTGCAAGCCTTCC
AACCTTTTGAGACCTACATTGCCGGCTGCCGGCTACCTGCTGACACCCAC
GGGACATCGGGTTTTGAGCCAGCTACCAAGCTTAAGGGGCGCCAAAGCCG
GGGCGCACCAGTTGGATGTCGAGTGTTCCAGCTGGCGTCAGACATAGAGT
GAGTGTTATAATAGTGTTTCAATGGACTTCTACCGGAAAGCGTACAGCAG
TAGTAGCAGTTTGCTTTGTAGCGAAGGCTCTTTTCCCCCCGCAACGCACA
TGTACTGCTGTATTGTAGTCTACAGCAAGTTGATAGTCGCAGCAGCAGTG
TCACCCACTTGCCGTTGGGCCGAGTACAGCAGTGTACAGCAGTAGTAGTA
GTAGTAGTTCTGGGGGGTGCTGAATGCTAAACGCTAGCACACAGGTGGGG
AGACCGTCTCACCCTAGACTACAGCAGCACTGCTGTGCATGATGTGAAGC
CAAATGCTCGTTGCCGGGATCACTTATCTGCGCCAATGCCTCATGCCCCC
CTGTGCACTCAGTTGTAGTTCTCCGTGCCCAATATTGCAGCAGCCCAGTC
GTACTCGTATCATCATGTGACTATTGTACTATTGTAATGTGGACGAGGAA
TGGAAGTTCTGGGTGCAGAGCCAAGCAGGCCGACTATCTGTGAAACGGAT
GTCCAACAGCAGTAGTCAAACGCCAAAAATCGCAACGGCATGGCCATGGG
GAGCGTACTGCTGTAGAATGCGCGGGACTTGCAAGTCAACCAACCACCGG
AGCCTTCGCACAGATGAAGGTGCCGAATCTGCTCAAGCGTCTCGAGTACA
TATGCTGGTACAGACCATGAGCACTCGGGGCAGGCGTGGTGCTTGCTGTA
TGTAGCTGTTGCCGCATTATTTACAGGGTGGGTGTCTCTTTAGCCCACCA
GAAGAAGTAGACCATGATTCTGCGAACATTTGGGGATGTACAGCAACAAG
CGTTTCTCCCGACGAACTCTGCGTTATCCACCAAATATCCAAATATAATG
TCTCCTCCTTGCTACCATCTCTCTGGACCCGCCTCGGCAAGATCCCTCTT
ACCTCTTACCACAACCGCTTCGCGCGCGCTATTAGTATTTAGTATTTAGT
AGGTGTGACGTCACGAATGATTGTGATTGGTCGCGGGTGTGAAGGGACTG
TGAAGGGACTGTGAAGGGACTGTGAAGGGACTGAGTACATGTAGCCCGGC
AAACTCACAGCGATACACGATACAGAGTGTCTGGTGCAGCGCGCGCGATC
CACAGTCAGACCGAGGATCACAGCCACAATCAATAGTAGTAGTCATGATT
GCATGATCGAAGCCTATCGTCACAACAACCTATTATAATAACAATCGCCT
TCCTCACGTTCGATATTGGATATTGGATGGTATTAACCAGGCGGGCGCGG
CTACCTCCACAGCTGGCCGGGGGCCGCCGCCATCTACCCCAGCTAGCAGA
GCCCGACATGACCAACCGAGGAAGGTGAGCAACGAACGTCTCGTCTCGTC
TCGTCTCCCCTCAAACATGCTTCTGCGCGATACACACACAAACGAAGTCG
GCTACAATATTATACACCCTTGCCATTTCCCTCCCCTTTTGATGAACGTG
GTTGTGAAGGTGGGGTACTGTACCGCTGTGGACTAGACTGTGTCCTCTAC
GCCGAAACTCTTCTCCGTCACCATGTCCTTGCATAAGAACAGCCGTAATA
GTGCCGCGGGGATGCTGTTTTTTTGTTCTTTTTCGGCATCGTCGCTTCCC
TATCTCTGGCCTGGGAGAATGTCTGGACCGTTATTTTCGAGAGTTTGAAG
GCACCCCCTTTCTTCACATGTTCAGCAGTATTGTAGGGACATTAGGACAG
CAGTGTTCAGCTTTAGCATAGGTCTCTGGCTACTGCTGTTGCCATCGGCG
CACTGCTGTAAGTGCTGTTGCAATGGGAGGGCAATTTGTCGTGGTGTTGT
GGAGCTGGTCCTCCTCCGACATGGAGGACCTGTGCCCAATTCTGCTGTTT
GCTCACAACGTGCGATGATTCTTATCCACGTGCCTTGGCCATTTGTTGGT
CGGTTGTGATGCAGACCGATTCCACCATACTTTTGGTTGATTTTTCTATC
TGTGCTTCGATGCTTGGCTCTTTTGCTCCCCTTTTGTCCCGCAGGTGTTT
TTGGTGTATTGGGCAGTCTGCTTCGCGACGGCCATAACGTGGTTGTTTGC
TGTGGCCGCAGCATCAGACGATGCTTGGTTGCAGTTCGAAGGGTATCCGT
TGCTCAAGCTTGGAGAGCGCTGCGAATTCTCTGCGTCGTTCTGCGATTAT
TGTGAGTGCCATGAGTTTCATGGCCGTTGTGGTGCCTCGTGAGCTCTACA
GTACTGACGCTATTTCTAGTACGATCGATGGGTGTCTGTAAATTGTATCT
TGACATGATATGTCTGTTTGCGTTACGGCCATATTCGCCTTCCCAATTAT
CGCCCCCACTATTGAACCGCGATATATGCCGCTGTGAAAAGATCAGACAT
CGGACATGTGACGTGAAAAAAGGGAATCGTCCTCGACAGACGTTGGGAGG
TTGTATGTACAGCAGTATTGTACCCTTTGTGAGTGCGATCTCCACCTATT
AATAGAGCTGTGTTTCGTGTCTGTTGCCGCAGCTTGCCCTCACCCTCACG
GACGCGTTTCCCTCCCGACTTTTGTTCACTATTGAGTATTAGTGCACCCA
TCTTCATCAACTAGTGGCATCTAGTATCTATTATCTCTCTCGCGCCATCC
TCTTTGGTTCGTAGATAGGAGTAGAGCACATGAATCATGTGAGTGAGTTT
CCTGAGTTTAGACCCGTCTTTGGTCTTTGTCTTGTTTGAATGCATTTCTG
TTATCCTTGCACCTTGCACCCACCCTCGCGCGCACCCTTTGGCCTGCCTG
TCTGTCTGACCGCCCCCCTTCATGCCGGACCGCCGTGAAACATGCCAACC
TCAGACAAAACGGGGACGGCGTTCCAGTTTTTTGCTGCGATCGTCATCAG
CGCTACCGTGGTCGTGATGATCGTGGCGGCTTTCAAGCCAGCTCCCGCCA
CGGGAAGGCTTGGAGCAGCAGCCGGGACGATGCTGCTGGTGTTTTCGGTC
CTCCAGCTGGCGGCCTTCTCCATCATGGCTGCTTCTGCCGGCAGACGTGA
GTACAAGTACATTGTATGCTGTCTGACAAGACGAAGACGAAGACGAAGAC
CAGACGAGACGAGGTGTTGCGTGGTACAGCAGCACTTGAGTCGTCAGTCT
TGAGTCGCGTCCTCGTGAGCATTTGTAGCCTCGTAGCCTCCTCCGCATGT
CACACGCGAGGCCTGAATCTTGCCGTAATATCGTGTGCCATGCCGTGGAG
TTTTACGGCATGTGCCTCTTTCCTCTTGCCTCAACAGTAGTGATGGCCGC
TGACACCTCACCTCGCTCATCTCCGACCCGTACTCCAGACTGTAGTCGTC
GTTGATAAAGCCCGTGTGTACCCCAGGCGGGACTGTCGCTCTCTCTTGTC
TCTCTTGACGCCCCCCCCCCCCCTGCTTGTCGTGGCTCCCGCTCCGATGA
CAGTAAATCGTGACAACGACAACTATTTCCAGATCAAGGCGGGGCCTACC
ATTGGCGTGGCCGTGATTGCTTGGGTGTTCGGTCTGGCAGGAGGCAGTGC
GATCCTGTTCCTTCGCCCTCACGCAACTCCTGGACAGGACGGTCCCTTGA
GGAGGTTTTCGCGTCGGGAGGGAGTTCGTAGCGCACCACGCCCGCGAGCG
CCGACCTCCCCTTCCGGCGTCACAATCTAGCTTTTTCTTTCACGCATGGC
AAAATGACATTGGGGAGGGCAGGCGGGATTTCTTGTCGTACGGTACCCTA
GGAAGGGATAATGCAGACGAGGAACGGGAGAAGAAGGCTGGATTGTTCTC
GCGGCTCTCCCGTTTTTTTTCATTTGCATTTCGAGTTCCTGCTTGGCAAA
AGGAGGTATGTAGATCGCTATTGAAGGAAGTGGAAGGAAGTTTGTCTCTA
GCTGTATTTGTTTTTCCCTCTAAGCCTGTTCCCTTTTATTAGGGGGTACG
ACTGGCATCCCTATTTGATGTAAAATAGATATTTACTTACTTAATGGTTA
GACTGAATGGGGGGGGGGGTGTAGAGAACTACCCCAACGGATGCCCGGTC
GTGGTGCACCTTGAAAGTAAAAGTTGATGCAATATGCTGCCAGGCCAGAG
GTTGTGTGGTGGCGTACAGTAGTCGAGAGGAGCATGCCATTGATGCCATT
GGGATACCATTGGGTAGGCTTGGTCTTGTCAGATTGACCGCCGCCAACAA
GACTGAGAGCGGTGCAGCCAGCACTGACCGGTGGGGAATAGACTATGGCC
AATGAACGGTTTCTTTCTCTTTTTTCCTGTTGTTTTGGTTGAGTGTATCG
TTCGTACAAGGAAGAGCGCAGCGTCCTCTTTTTAATTTTTTTGTAGCACC
AGATTGATTCCGTTTAGGGCAGTACCACGCTTGTACAGAGAATTGATGGC
TTGGTTTTCTGCCGGACCATGGGGTGTTTCAAAATGGCATGAATATCTGT
AGATATGCACATCAGTTTTATTGCTAGAATGCGCCGGCAAAAGACGAACA
AGGCCGATCGATCAAGGATACAAATCCTCGCGCTTGTCTTGTTCGCCGTC
GCCTTTCTTTCCTAAGAGGTATGTATATGTCCATCCATGCCGTGCGAACG
CCTCACTCAGTAACAATGGTGCTAGATGATTTCGATATCACGCTTTTCCC
CTCTACCTCTATGTTGTGCACTCGAACGCAACGCTTACTGAGTACTGCTG
TACGCAACAAAGAGCAGTGGTGTAGACTACTTCGTGTGCTCTTGTTTTGG
AGTTGAGGAGGTTTGCTGTATGTTCTCAGGGTAGACTCGTCCACACTATC
CACATGAAGAGGTGTGACATATTGTAGCATGGAAGAGGTTCCGAGATATA
TATCCGGTGGCATAACAGGGGGGGAAGGAGGAGAGGAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7957:473..5810-

>mRNA_E_fasciculatus_S2_contig7957.16113.1 ID=mRNA_E_fasciculatus_S2_contig7957.16113.1|Name=mRNA_E_fasciculatus_S2_contig7957.16113.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=693bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7957:473..5810- (Ectocarpus fasciculatus EfasUO2)
ATGTCGAGTGTTCCAGCTGGCGTCAGACATAGAGCGGGCGCGGCTACCTC
CACAGCTGGCCGGGGGCCGCCGCCATCTACCCCAGCTAGCAGAGCCCGAC
ATGACCAACCGAGGAAGGTGTTTTTGGTGTATTGGGCAGTCTGCTTCGCG
ACGGCCATAACGTGGTTGTTTGCTGTGGCCGCAGCATCAGACGATGCTTG
GTTGCAGTTCGAAGGGTATCCGTTGCTCAAGCTTGGAGAGCGCTGCGAAT
TCTCTGCGTCGTTCTGCGATTATTACAAAACGGGGACGGCGTTCCAGTTT
TTTGCTGCGATCGTCATCAGCGCTACCGTGGTCGTGATGATCGTGGCGGC
TTTCAAGCCAGCTCCCGCCACGGGAAGGCTTGGAGCAGCAGCCGGGACGA
TGCTGCTGGTGTTTTCGGTCCTCCAGCTGGCGGCCTTCTCCATCATGGCT
GCTTCTGCCGGCAGACTAAATCGTGACAACGACAACTATTTCCAGATCAA
GGCGGGGCCTACCATTGGCGTGGCCGTGATTGCTTGGGTGTTCGGTCTGG
CAGGAGGCAGTGCGATCCTGTTCCTTCGCCCTCACGCAACTCCTGGACAG
GACGGTCCCTTGAGGAGGTTTTCGCGTCGGGAGGGAGTTCGTAGCGCACC
ACGCCCGCGAGCGCCGACCTCCCCTTCCGGCGTCACAATCTAG
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