mRNA_E_fasciculatus_S2_contig795.16109.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig795.16109.1
Unique NamemRNA_E_fasciculatus_S2_contig795.16109.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig795.16109.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE3_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 8.380e-106
Identity = 339/361 (93.91%), Postives = 342/361 (94.74%), Query Frame = 1 
Query:    4 EAFAHMELEQANLEAEAAAXXXXXXXXXXXXXXAVEKASAENGGXXXXXXXXXXXXXXXXAPGRSRRHSAERWEELTLDRETGEYYEGGWYRGRRHGKGLCVYANKRLXXXXXXXXXXXXVGRILGPDREVIXXXXXXXXXXXXKGRYTDGAGVXXXXXXXXXXXXXXXVYTFPVCSSSMTADAVAASAXXXXXXXXXVKSGDAAVSAGPFAFGTMFYDGEFKDNARSGRGLLIWPGGSXXXXXXXXXXXXXXVFRTDDGFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLQIPRPVEDDMGGWMIPIQFQSDIERIHVKAGFDKGGL 1086
            EAFAHMELEQANLEAE   XXXXXXXXXXX   AVEKASAENGG   XX XXXXXXXXXX PGRSRRHSAERWEELTLDRETGEYYEGGWYRGRRHGKGLCVYANKR+XXXXXXXXXXXXVGRILGPDREVI XXXXXXXXX  KGRYTDGAGVXXXXXXXXXXXXXXXVYTFPVC +SMTA AVAA  XXXXXXXXX KSGDAA+SAGPFAFGTMFYDGEFKDNARSGRGLLIWPGGSXXXXXXXXXXXXXXVFRTDDGFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLQIPRPVEDDMGGWMIPIQFQSDIERIHVKAGFDKGGL
Sbjct:  556 EAFAHMELEQANLEAEXXXXXXXXXXXXXXGAQAVEKASAENGGSGNXXAXXXXXXXXXXTPGRSRRHSAERWEELTLDRETGEYYEGGWYRGRRHGKGLCVYANKRMXXXXXXXXXXXXVGRILGPDREVIYXXXXXXXXXCGKGRYTDGAGVXXXXXXXXXXXXXXXVYTFPVCPASMTAAAVAAXXXXXXXXXXXXKSGDAAISAGPFAFGTMFYDGEFKDNARSGRGLLIWPGGSXXXXXXXXXXXXXXVFRTDDGFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLQIPRPVEDDMGGWMIPIQFQSDIERIHVKAGFDKGGL 916
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BLAST of mRNA_E_fasciculatus_S2_contig795.16109.1 vs.
Match: Hypothetical (protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7W8_HETAK)

HSP 1 Score: 58.2 bits (139), Expect = 4.960e-6
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  973 LQIPRPVED-DMGGWMIPIQFQSDIERIHVKAGFDKGG 1083
            L+I  PVED + GG++IPIQFQSD+ERIH+KAGFDK G
Sbjct:  219 LKITEPVEDVEEGGYLIPIQFQSDMERIHLKAGFDKEG 256
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig795.16109.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized8.380e-10693.91protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE3... [more]
Hypothetical4.960e-671.05protein n=2 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig795contigE_fasciculatus_S2_contig795:25769..26857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score335.9
Seed ortholog evalue2.3e-89
Seed eggNOG ortholog2880.D8LCE3
Model size1089
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.regulation of ryanodine-sensitive calcium-release channel activity
EggNOG OGsCOG4642@1,KOG0231@2759
Cds size1071
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842455.5336053-CDS-E_fasciculatus_S2_contig795:25768..268391696842455.5336053-CDS-E_fasciculatus_S2_contig795:25768..26839Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig795 25769..26839 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842455.5481179-UTR-E_fasciculatus_S2_contig795:26839..268571696842455.5481179-UTR-E_fasciculatus_S2_contig795:26839..26857Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig795 26840..26857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig795.16109.1prot_E_fasciculatus_S2_contig795.16109.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig795 25769..26839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig795.16109.1

>prot_E_fasciculatus_S2_contig795.16109.1 ID=prot_E_fasciculatus_S2_contig795.16109.1|Name=mRNA_E_fasciculatus_S2_contig795.16109.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=357bp
MELEQANLEAEAAAAATAAAEATAAGAQAVEKASAENGGSGNGGASGGSG
GRAGRAPGRSRRHSAERWEELTLDRETGEYYEGGWYRGRRHGKGLCVYAN
KRLYEGDWRAGKEHGVGRILGPDREVIYEGDFADGKFCGKGRYTDGAGVV
YDGEWKDSAMHGRGVYTFPVCSSSMTADAVAASAAAAAAANAAVKSGDAA
VSAGPFAFGTMFYDGEFKDNARSGRGLLIWPGGSYDGEWLDDAKHGRGVF
RTDDGFVYDGQWADDLAEGRGMCIHPDGQRYEGVFRSGKKEGRGTLAFAN
GASYEGRFRDDAIDGQGMLQIPRPVEDDMGGWMIPIQFQSDIERIHVKAG
FDKGGL*
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mRNA from alignment at E_fasciculatus_S2_contig795:25769..26857-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig795.16109.1 ID=mRNA_E_fasciculatus_S2_contig795.16109.1|Name=mRNA_E_fasciculatus_S2_contig795.16109.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1089bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig795:25769..26857- (Ectocarpus fasciculatus EfasUO2)
CAGGAGGCATTCGCGCACATGGAGCTGGAACAAGCCAACCTGGAGGCGGA
GGCGGCGGCGGCGGCGACCGCCGCGGCAGAAGCGACAGCTGCGGGGGCCC
AAGCCGTGGAGAAGGCATCGGCGGAAAACGGAGGTTCGGGGAACGGCGGG
GCTAGCGGCGGTTCGGGCGGCCGAGCAGGGCGCGCCCCGGGGCGCTCGAG
ACGCCACTCGGCAGAGCGGTGGGAGGAGCTCACGCTGGACAGAGAGACGG
GCGAGTACTACGAGGGCGGTTGGTATCGCGGGCGGCGGCACGGCAAGGGG
CTCTGCGTGTACGCCAACAAGCGGCTGTACGAGGGGGACTGGCGGGCGGG
CAAGGAGCACGGCGTGGGCAGGATCCTGGGGCCCGACCGGGAGGTGATCT
ACGAAGGGGACTTCGCGGACGGGAAGTTCTGCGGCAAGGGGCGGTACACG
GACGGGGCCGGCGTGGTGTACGACGGCGAGTGGAAGGACAGCGCCATGCA
CGGGCGAGGGGTCTACACGTTCCCCGTGTGCTCCTCCTCGATGACCGCGG
ACGCCGTCGCGGCGTCAGCGGCGGCGGCGGCGGCGGCGAACGCCGCCGTC
AAGAGCGGCGACGCCGCTGTCTCCGCGGGTCCCTTCGCGTTCGGCACGAT
GTTCTACGACGGCGAGTTCAAGGACAACGCGCGCAGCGGCCGGGGCTTGC
TGATCTGGCCCGGCGGCAGCTACGACGGGGAGTGGCTGGACGACGCCAAG
CACGGGCGCGGCGTCTTCCGGACCGACGACGGGTTCGTGTACGACGGCCA
GTGGGCGGACGACCTCGCGGAGGGCCGCGGGATGTGCATCCACCCGGACG
GGCAGCGGTACGAGGGGGTCTTCCGCAGCGGGAAGAAGGAGGGGCGCGGC
ACGCTGGCGTTCGCGAACGGCGCCTCCTACGAAGGCCGCTTCCGAGACGA
CGCCATCGACGGGCAGGGGATGCTGCAGATCCCCAGGCCCGTGGAGGACG
ACATGGGCGGCTGGATGATCCCCATCCAGTTCCAGTCGGACATCGAGCGC
ATCCACGTCAAGGCGGGCTTTGACAAGGGTGGGCTTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig795:25769..26857-

>mRNA_E_fasciculatus_S2_contig795.16109.1 ID=mRNA_E_fasciculatus_S2_contig795.16109.1|Name=mRNA_E_fasciculatus_S2_contig795.16109.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1071bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig795:25769..26857- (Ectocarpus fasciculatus EfasUO2)
ATGGAGCTGGAACAAGCCAACCTGGAGGCGGAGGCGGCGGCGGCGGCGAC
CGCCGCGGCAGAAGCGACAGCTGCGGGGGCCCAAGCCGTGGAGAAGGCAT
CGGCGGAAAACGGAGGTTCGGGGAACGGCGGGGCTAGCGGCGGTTCGGGC
GGCCGAGCAGGGCGCGCCCCGGGGCGCTCGAGACGCCACTCGGCAGAGCG
GTGGGAGGAGCTCACGCTGGACAGAGAGACGGGCGAGTACTACGAGGGCG
GTTGGTATCGCGGGCGGCGGCACGGCAAGGGGCTCTGCGTGTACGCCAAC
AAGCGGCTGTACGAGGGGGACTGGCGGGCGGGCAAGGAGCACGGCGTGGG
CAGGATCCTGGGGCCCGACCGGGAGGTGATCTACGAAGGGGACTTCGCGG
ACGGGAAGTTCTGCGGCAAGGGGCGGTACACGGACGGGGCCGGCGTGGTG
TACGACGGCGAGTGGAAGGACAGCGCCATGCACGGGCGAGGGGTCTACAC
GTTCCCCGTGTGCTCCTCCTCGATGACCGCGGACGCCGTCGCGGCGTCAG
CGGCGGCGGCGGCGGCGGCGAACGCCGCCGTCAAGAGCGGCGACGCCGCT
GTCTCCGCGGGTCCCTTCGCGTTCGGCACGATGTTCTACGACGGCGAGTT
CAAGGACAACGCGCGCAGCGGCCGGGGCTTGCTGATCTGGCCCGGCGGCA
GCTACGACGGGGAGTGGCTGGACGACGCCAAGCACGGGCGCGGCGTCTTC
CGGACCGACGACGGGTTCGTGTACGACGGCCAGTGGGCGGACGACCTCGC
GGAGGGCCGCGGGATGTGCATCCACCCGGACGGGCAGCGGTACGAGGGGG
TCTTCCGCAGCGGGAAGAAGGAGGGGCGCGGCACGCTGGCGTTCGCGAAC
GGCGCCTCCTACGAAGGCCGCTTCCGAGACGACGCCATCGACGGGCAGGG
GATGCTGCAGATCCCCAGGCCCGTGGAGGACGACATGGGCGGCTGGATGA
TCCCCATCCAGTTCCAGTCGGACATCGAGCGCATCCACGTCAAGGCGGGC
TTTGACAAGGGTGGGCTTTGA
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