mRNA_E_fasciculatus_S2_contig7946.16104.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7946.16104.1
Unique NamemRNA_E_fasciculatus_S2_contig7946.16104.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7946.16104.1 vs.
Match: Uncharacterized (protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI2_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.760e-6
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 3 
Query:  399 MLWGVRGLRRETGLRGMERGIRTMQL 476
            MLWGVRGLRRETGLRGMERGIRTMQL
Sbjct:    1 MLWGVRGLRRETGLRGMERGIRTMQL 26
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7946.16104.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.760e-6100.00protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7946contigE_fasciculatus_S2_contig7946:1612..2832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size480
Hectar predicted targeting categoryother localisation
Exons3
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842454.9456131-CDS-E_fasciculatus_S2_contig7946:1611..17181696842454.9456131-CDS-E_fasciculatus_S2_contig7946:1611..1718Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7946 1612..1718 -
1696842454.963079-CDS-E_fasciculatus_S2_contig7946:2071..21611696842454.963079-CDS-E_fasciculatus_S2_contig7946:2071..2161Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7946 2072..2161 -
1696842454.9761717-CDS-E_fasciculatus_S2_contig7946:2551..28251696842454.9761717-CDS-E_fasciculatus_S2_contig7946:2551..2825Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7946 2552..2825 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842454.9872968-UTR-E_fasciculatus_S2_contig7946:2825..28321696842454.9872968-UTR-E_fasciculatus_S2_contig7946:2825..2832Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7946 2826..2832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7946.16104.1prot_E_fasciculatus_S2_contig7946.16104.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7946 1612..2825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7946.16104.1

>prot_E_fasciculatus_S2_contig7946.16104.1 ID=prot_E_fasciculatus_S2_contig7946.16104.1|Name=mRNA_E_fasciculatus_S2_contig7946.16104.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=157bp
MLTCKCTGGKQKKPFCEGSCRCHVKGIKCVPMHCTCRGACVKNRADRAEE
IARKAREAAEAAEAAAAARAAATAEAAAAATSVAGDHGPPQRNAGVTQVE
ARRKAGQSGRQLRTHRTRTVIGLAYDAFLRDALGGARTPAGDGATGHGAR
NQDDAAD
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mRNA from alignment at E_fasciculatus_S2_contig7946:1612..2832-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7946.16104.1 ID=mRNA_E_fasciculatus_S2_contig7946.16104.1|Name=mRNA_E_fasciculatus_S2_contig7946.16104.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1221bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7946:1612..2832- (Ectocarpus fasciculatus EfasUO2)
GGTGAAGATGCTAACGTGTAAGTGCACCGGGGGGAAGCAGAAGAAACCCT
TCTGCGAAGGTTCCTGCAGGTGCCATGTGAAGGGCATCAAGTGCGTACCG
ATGCACTGCACGTGCAGAGGAGCATGCGTGAAGAACCGAGCAGATCGAGC
TGAGGAAATTGCGCGGAAAGCTAGGGAGGCGGCGGAAGCAGCTGAGGCTG
CGGCAGCAGCTAGGGCTGCGGCAACAGCTGAGGCTGCGGCAGCAGCTACG
AGTGTAGCGGGCGACCATGGCCCACCACAAAGTGAGTACTGGAAAAAATT
CCTGCTAGAGACAGAGTTTTTTTGTAGTGCCCGAACACCTACCCCCCCCC
CCCCCCCCCCCGCCCCCCCCCCCCCCCCGCCCACCCCCCCACAAAAAAAG
CCCCTTTCAACACATATCTTCCCTCCACACACCAANNNNNNNNNNTGTAG
CGCGCGACAATGGCCCACCACAAACCCGCTCCTCCAAAAAACTCCCTCTA
TAGACAGTGTTTTTTTGAAGTGCCCGAACCCCCACCCCCCCCCCCCCTCG
CCGGCGCACACACGCATTGTCAGAACCTCACAACAAAGAGCGCCTATTTC
AAGGATTGCCTTGACTCTGCTGACTAAGTTGGAAACACACCGTGCCTGCC
GTTCGCATACTGTCGGTGCAGGGAACGCGGGCGTGACGCAGGTTGAAGCG
CGGCGGAAAGCAGGACAAAGCGGGCGTCAACTGCGGACTCATCGGACACG
TACTGTCATTGGTGGGGCAGAACTCAATATAATGGGTAGTTGGTGTTTCG
TCCTACAAAATTCAGACCCGTTGCCATTCCCACACACGCCCCCCGACCCG
TCCCCCGTAGAGGTTGCTCTCGGCTGGCGACGATACCGTAAAACAACGGT
GTATAAAATAACGTTTGTGAAGAGTACGGATCAGGTCGCTCCTCATTCGA
CTTGGCGCACAGCACAGGCGATATGGCCCAGTGCTTTCCACGGTACCTCA
TTCCACTCATAATAACTGAAATACCTTTATTTTGGTGGAGGGAAGGTATC
ATGTTAACGAGTCTTTACACTACCGTGTAGTGCAACCAACCGGTACATCG
AAATCTATGCGCAGGTTTGGCATACGACGCCTTCCTTAGGGATGCTTTGG
GGGGTGCGCGGACTCCGGCGGGAGACGGGGCTACGGGGCATGGAGCGCGG
AATCAGGACGATGCAGCTGAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7946:1612..2832-

>mRNA_E_fasciculatus_S2_contig7946.16104.1 ID=mRNA_E_fasciculatus_S2_contig7946.16104.1|Name=mRNA_E_fasciculatus_S2_contig7946.16104.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=471bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7946:1612..2832- (Ectocarpus fasciculatus EfasUO2)
ATGCTAACGTGTAAGTGCACCGGGGGGAAGCAGAAGAAACCCTTCTGCGA
AGGTTCCTGCAGGTGCCATGTGAAGGGCATCAAGTGCGTACCGATGCACT
GCACGTGCAGAGGAGCATGCGTGAAGAACCGAGCAGATCGAGCTGAGGAA
ATTGCGCGGAAAGCTAGGGAGGCGGCGGAAGCAGCTGAGGCTGCGGCAGC
AGCTAGGGCTGCGGCAACAGCTGAGGCTGCGGCAGCAGCTACGAGTGTAG
CGGGCGACCATGGCCCACCACAAAGGAACGCGGGCGTGACGCAGGTTGAA
GCGCGGCGGAAAGCAGGACAAAGCGGGCGTCAACTGCGGACTCATCGGAC
ACGTACTGTCATTGGTTTGGCATACGACGCCTTCCTTAGGGATGCTTTGG
GGGGTGCGCGGACTCCGGCGGGAGACGGGGCTACGGGGCATGGAGCGCGG
AATCAGGACGATGCAGCTGAC
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