mRNA_E_fasciculatus_S2_contig7923.16086.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7923.16086.1
Unique NamemRNA_E_fasciculatus_S2_contig7923.16086.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7923.16086.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG6_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 7.210e-76
Identity = 205/334 (61.38%), Postives = 214/334 (64.07%), Query Frame = 2 
Query:    2 QGVVTEEMVQTGKAYEIFSADGTRLLRATNTKSSRCHKFFGWDWGGYALTFEAPYPSPPSAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEREVPSAXXXXXXXXXXXXXXXXXXXXXQVKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSSFSFSGSPGAYRLHSDMHGGNTLFFLGKCYPAEWVVWDVGGKTDGAWERLELRWQEGGKKFTISGHGGQHVRWKDSDGFFRGTRSGSKATNFVLREKTSSVTGN-ASTNGNSSSSSS 1000
            +GVVTEEMVQT K+YEIFSADGTRL+RA+NTKSSRC+KFFG+ WGGYAL FE+P PS PSAAE                                                           Q  Q XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                             RSSSF FSGSPGAYRLHSDMHGGNTLFFLGKCYPAEWVVWDVGGKTDGAWERLELRWQEGGKKFTISGHGGQHVRWKD+DGFFRGTRS SKAT FVL+EK SS TGN ASTNG SSS SS
Sbjct:  494 EGVVTEEMVQTEKSYEIFSADGTRLVRASNTKSSRCNKFFGYAWGGYALMFESPCPSQPSAAET----------------------------------------------------------QEDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHKEREE----------------------------------RSSSFYFSGSPGAYRLHSDMHGGNTLFFLGKCYPAEWVVWDVGGKTDGAWERLELRWQEGGKKFTISGHGGQHVRWKDADGFFRGTRSESKATEFVLKEKISSATGNDASTNGTSSSGSS 735
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BLAST of mRNA_E_fasciculatus_S2_contig7923.16086.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T5_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 8.290e-68
Identity = 200/321 (62.31%), Postives = 212/321 (66.04%), Query Frame = 2 
Query:    2 QGVVTEEMVQTGKAYEIFSADGTRLLRATNTKSSRCHKFFGWDWGGYALTFEAPYPSPPSAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEREVPSAXXXXXXXXXXXXXXXXXXXXXQVKQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSSFSFSGSPGAYRLHSDMHGGNTLFFLGKCYPAEWVVWDVGGKTDGAWERLELRWQEGGKKFTISGHGGQHVRWKDSDGFFRGTRSGSKATNFVLREKTSSVTGN 964
            +GVVT+EMVQTGK+YEIFSAD TRL+RA+NTKSSRC+KF G+ WGGY LTFE P+PSPPSAAE   XXXXXXXXXX    XXXXXXXXXXXXXX                                                                                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       SGSP AYRLHSDMHGGNTLFFLGKCYPAEWVVWDVGGKTDG+WE LELRWQEGGKKFTISGHGGQHVRWKD+DG FRGTRS +KAT FVL+EK SS TGN
Sbjct:  129 EGVVTKEMVQTGKSYEIFSADRTRLVRASNTKSSRCNKFLGYAWGGYVLTFEGPHPSPPSAAETQEXXXXXXXXXXEDQDXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSPDAYRLHSDMHGGNTLFFLGKCYPAEWVVWDVGGKTDGSWEMLELRWQEGGKKFTISGHGGQHVRWKDADGVFRGTRSENKATEFVLKEKISSATGN 370
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BLAST of mRNA_E_fasciculatus_S2_contig7923.16086.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY2_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 2.530e-53
Identity = 93/108 (86.11%), Postives = 97/108 (89.81%), Query Frame = 2 
Query:  662 FSGSPGAYRLHSDMHGGNTLFFLGKCYPAEWVVWDVGGKTDGAWERLELRWQEGGKKFTISGHGGQHVRWKDSDGFFRGTRSGSKATNFVLREKTSSVTGN--ASTNG 979
            FSGSPGAYRLH DMHGGNTLFFLGKCYPAEWVVWDVGGKTDGAWERLELRWQEGGKKFTIS +GGQHVRWKD+DG FRGT S SKAT FVL+EK SS TG   +STNG
Sbjct:   80 FSGSPGAYRLHGDMHGGNTLFFLGKCYPAEWVVWDVGGKTDGAWERLELRWQEGGKKFTISRYGGQHVRWKDADGVFRGT-SESKATEFVLKEKISSATGQDASSTNG 186
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7923.16086.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC2_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.100e-49
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 2 
Query:  647 SSSFSFSGSPGAYRLHSDMHGGNTLFFLGKCYPAEWVVWDVGGKTDGAWERLELRWQEGGKKFTISGHGGQHVRWKDSDGFFRGTRSGSKATNFVLREKTSSVTGNA 967
            SSSFS+SGSPGAYRLH  MHGGNTLF LG CYPAEWVVWDV GKTDG WERLELRW+EGGKKFTISGH GQHVRWKDSDGF RGTR  SK T+FVLRE+ S+ T  A
Sbjct:   41 SSSFSYSGSPGAYRLHCGMHGGNTLFLLGACYPAEWVVWDVPGKTDGKWERLELRWREGGKKFTISGHVGQHVRWKDSDGFVRGTRGESKVTDFVLRERGSTRTSTA 147
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7923.16086.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized7.210e-7661.38protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.290e-6862.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.530e-5386.11protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.100e-4981.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7923contigE_fasciculatus_S2_contig7923:4973..7039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1769
Hectar predicted targeting categoryother localisation
Exons2
Cds size981
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842453.2736306-UTR-E_fasciculatus_S2_contig7923:4972..57381696842453.2736306-UTR-E_fasciculatus_S2_contig7923:4972..5738Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7923 4973..5738 -
1696842453.3067796-UTR-E_fasciculatus_S2_contig7923:7017..70391696842453.3067796-UTR-E_fasciculatus_S2_contig7923:7017..7039Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7923 7018..7039 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842453.2840223-CDS-E_fasciculatus_S2_contig7923:5738..66261696842453.2840223-CDS-E_fasciculatus_S2_contig7923:5738..6626Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7923 5739..6626 -
1696842453.2950053-CDS-E_fasciculatus_S2_contig7923:6924..70171696842453.2950053-CDS-E_fasciculatus_S2_contig7923:6924..7017Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7923 6925..7017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7923.16086.1prot_E_fasciculatus_S2_contig7923.16086.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7923 5739..7017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7923.16086.1

>prot_E_fasciculatus_S2_contig7923.16086.1 ID=prot_E_fasciculatus_S2_contig7923.16086.1|Name=mRNA_E_fasciculatus_S2_contig7923.16086.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=327bp
MVQTGKAYEIFSADGTRLLRATNTKSSRCHKFFGWDWGGYALTFEAPYPS
PPSAAETQEDQEEDEGQQEQLVQHEQHEQHEEQQERKEREVPSASPSAAA
ETQADQEEDEGQQEQQVKQVQQEPHGQYEEQQEPDEREGPSASPSSAAET
QADQEEDEGQQEQQVQQEPHGQHEEQQEPGEREGPSASPSSSEETQEERK
DHKEQEERSSSFSFSGSPGAYRLHSDMHGGNTLFFLGKCYPAEWVVWDVG
GKTDGAWERLELRWQEGGKKFTISGHGGQHVRWKDSDGFFRGTRSGSKAT
NFVLREKTSSVTGNASTNGNSSSSSS*
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mRNA from alignment at E_fasciculatus_S2_contig7923:4973..7039-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7923.16086.1 ID=mRNA_E_fasciculatus_S2_contig7923.16086.1|Name=mRNA_E_fasciculatus_S2_contig7923.16086.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2067bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7923:4973..7039- (Ectocarpus fasciculatus EfasUO2)
GCAGGGCGTGGTCACGGAGGAGATGGTGCAGACAGGGAAAGCGTATGAGA
TCTTCTCTGCGGACGGGACGCGGCTCCTGCGAGCCACAAATACCAAGTCC
AGCCGCTGCCACAAGGTGCGACTCTTGGTCCCGTTTTTCGCTCGCCGGCA
GATGCACGGTACGTATCGCGCCGGCCGACCACCGAATGTTTGCCTCAACG
AGGTAGTCTTCTGATCGGGATGGGAAATAGAGATAAGCATTGGTTCCTCC
CTACTCCCCACGAACTCGTTCCTACCGCAGCTCCTCTTGGAAATGTCGGC
GGGGAAGACAGTTCTCTAGTCTATCGCGTCGTGGTGCTCGCCAGAACGAG
AGCTGCATCTTTTCTCACGAGCCGTTTCTTGCACCGTGTACACCCATCCG
CTCTCGTGTGCAGTTTTTTGGCTGGGACTGGGGGGGTTACGCGCTTACGT
TTGAAGCCCCATACCCATCCCCGCCGTCGGCGGCGGAGACTCAAGAGGAT
CAAGAAGAGGACGAAGGGCAACAAGAGCAACTAGTGCAACACGAACAGCA
TGAACAGCACGAAGAGCAACAAGAGCGAAAAGAGCGAGAAGTCCCATCCG
CATCCCCATCGGCGGCGGCGGAGACTCAAGCAGATCAAGAAGAGGATGAA
GGGCAACAAGAGCAACAGGTGAAACAAGTGCAACAAGAACCGCATGGACA
ATACGAAGAGCAACAAGAACCAGACGAGCGAGAAGGCCCATCCGCATCCC
CGTCGTCGGCGGCGGAGACTCAAGCAGATCAAGAAGAGGATGAAGGGCAA
CAAGAGCAACAAGTGCAACAAGAACCGCATGGACAACACGAAGAGCAACA
AGAGCCAGGCGAGCGAGAAGGCCCATCCGCGTCCCCGTCGTCGTCAGAGG
AGACTCAAGAAGAACGCAAAGATCACAAAGAACAAGAAGAACGTTCCTCG
TCCTTCTCCTTCTCCGGTTCCCCGGGCGCCTACCGCCTGCACAGCGACAT
GCACGGCGGCAACACGCTGTTCTTCCTGGGGAAGTGCTACCCGGCGGAGT
GGGTAGTCTGGGACGTCGGCGGGAAGACGGACGGAGCGTGGGAGAGGCTG
GAGCTGAGGTGGCAGGAGGGTGGGAAGAAGTTCACGATCTCGGGGCACGG
GGGCCAGCACGTGAGGTGGAAGGATTCCGACGGCTTCTTCCGGGGGACCC
GGAGTGGGAGCAAGGCCACCAACTTCGTCTTGAGGGAGAAGACCAGCAGC
GTCACTGGCAATGCCAGCACGAACGGAAACAGCAGCAGCAGCAGCAGTTA
AATGCTCGATGCCTGCGAGCGTGCTTTATCGCGTGACCTTGATATTCCAT
ATTTTTGTTTTGTTTTGAGTCCCCCGGCGATCGATCGATGTACAGTGCGT
GAGCTGGATTACGGGGCATTATACATTCCCTTGAATGTAGTTTGGTTGTT
GTTCTGTTGTGGATATTGCACTGGTACCCCCGGAGGCAATGGTTTTGATA
CTTCAAATTTATTTTTTGTCTTCCTAAAACATTTTCACCTCGCATAGTGT
GCAGAGGGGAGCGGAGGGCTCCAGCATATTCGCCTTTATTTTTGTTTGAT
GTTATCGCTCTGCTCTGCTGATCCTTCGGGTCCTAGCATTTCAGTGTACC
TTGTTAGGGTAAGTTACCTTGTGACCACGGGAATTGGCCGTGTAGTGTAC
GGACGCATGGAGGTACTCGGTGGAGAGACCGGTATGTGACGACAACACAC
ACGCCGGACCCCGGGGTTCTTCGAGTTCTAGACGCCAGGATGACAACGCC
GGGGGAGGCAGTCTAATTCGGGTTCCACGGTGTCAGTGTTTCTACAGCGC
TTGATGTTGTCTTTCTTTGGTGCCGTGTCATTTGTTTTCTAGTTCATCCG
TCACGAACCTCCTTCGACGTGGGCATGACCATGTCCTATCCTATTTGGTC
CACTCGGCAATCTGGAAATCGGTCGGGAGTTGTTGTTGTTGTTTCTCACA
TACGCTCAAGCCCACAAAAACGGGAAGCCCGTAGTCTCAAAGCCCGGCAC
ACGCGACACCGCGAAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7923:4973..7039-

>mRNA_E_fasciculatus_S2_contig7923.16086.1 ID=mRNA_E_fasciculatus_S2_contig7923.16086.1|Name=mRNA_E_fasciculatus_S2_contig7923.16086.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=981bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7923:4973..7039- (Ectocarpus fasciculatus EfasUO2)
ATGGTGCAGACAGGGAAAGCGTATGAGATCTTCTCTGCGGACGGGACGCG
GCTCCTGCGAGCCACAAATACCAAGTCCAGCCGCTGCCACAAGTTTTTTG
GCTGGGACTGGGGGGGTTACGCGCTTACGTTTGAAGCCCCATACCCATCC
CCGCCGTCGGCGGCGGAGACTCAAGAGGATCAAGAAGAGGACGAAGGGCA
ACAAGAGCAACTAGTGCAACACGAACAGCATGAACAGCACGAAGAGCAAC
AAGAGCGAAAAGAGCGAGAAGTCCCATCCGCATCCCCATCGGCGGCGGCG
GAGACTCAAGCAGATCAAGAAGAGGATGAAGGGCAACAAGAGCAACAGGT
GAAACAAGTGCAACAAGAACCGCATGGACAATACGAAGAGCAACAAGAAC
CAGACGAGCGAGAAGGCCCATCCGCATCCCCGTCGTCGGCGGCGGAGACT
CAAGCAGATCAAGAAGAGGATGAAGGGCAACAAGAGCAACAAGTGCAACA
AGAACCGCATGGACAACACGAAGAGCAACAAGAGCCAGGCGAGCGAGAAG
GCCCATCCGCGTCCCCGTCGTCGTCAGAGGAGACTCAAGAAGAACGCAAA
GATCACAAAGAACAAGAAGAACGTTCCTCGTCCTTCTCCTTCTCCGGTTC
CCCGGGCGCCTACCGCCTGCACAGCGACATGCACGGCGGCAACACGCTGT
TCTTCCTGGGGAAGTGCTACCCGGCGGAGTGGGTAGTCTGGGACGTCGGC
GGGAAGACGGACGGAGCGTGGGAGAGGCTGGAGCTGAGGTGGCAGGAGGG
TGGGAAGAAGTTCACGATCTCGGGGCACGGGGGCCAGCACGTGAGGTGGA
AGGATTCCGACGGCTTCTTCCGGGGGACCCGGAGTGGGAGCAAGGCCACC
AACTTCGTCTTGAGGGAGAAGACCAGCAGCGTCACTGGCAATGCCAGCAC
GAACGGAAACAGCAGCAGCAGCAGCAGTTAA
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