mRNA_E_fasciculatus_S2_contig792.16084.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig792.16084.1
Unique NamemRNA_E_fasciculatus_S2_contig792.16084.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig792.16084.1 vs.
Match: ENDO3c (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP1_9PHAE)

HSP 1 Score: 761 bits (1966), Expect = 1.730e-270
Identity = 411/500 (82.20%), Postives = 426/500 (85.20%), Query Frame = 1 
Query:    4 MQAGTRMARRTRSGFCAVKKEELDDEAFGTDAPSSLPTGTCVVKDEPKSSIIRLAPNTSQGGSTASATSAAGSAHPEPSETSRYFDSSPRVRGSKRKAAASVTGSAGGSCATGGRSSRLRGASDGTRRASRLSVTPPSAITAVYAVGAQRRSSGRLNAAKKEELTSALELPEPSPSGAKRRAKGDASTNGDRKPPRRRAVAATKEEVCVQASEEGKGXXXXXXXXXXXTEKGEGVRERVIPPRLAEKAALIIQVMDELYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPDPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRYDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMALFPRYSWAKLHLQFIYFGREHCQARVHDASACPICSWVKKTGPGSPKALGELTCLNDYLASPTPTKKSSKNAIVYSERKLEMEQFKMKLEDS 1503
            ++ GTRMARRTR GFCAVKKEELDDE FGTD P S  TGTC +K E KSSI R  PNT++GGS   ATSA GS   EP ETSRYFDSS  VRG KRK AASVTG A GSC TG +S R RG  DGT +AS+LS T PSA T   AVGA+RRSS  LNA KKEELTSALELPEPSPS AKRR KGD ST GD KP RRRA  A K EVCVQASEEGKG            EK   VRER IPPRLAEKAALIIQ+MD+LYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAP+PQSLSKMA EDLQQIIRSVGLAPTKAKHLIALSQQILDR+DGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRW LTKNEKNASKVEEDLMA+FPR SWAKLHLQFIYFGREHCQARVHDASACPICSWVKKTGPGSPKAL ELTCLNDYLASPTPTKKSSKNAIVYSER LEMEQF+MKLEDS
Sbjct:   70 LEVGTRMARRTRFGFCAVKKEELDDELFGTDTPPS--TGTCAIKGELKSSIRRQTPNTNRGGSKTPATSAGGSGR-EPPETSRYFDSSLPVRGRKRKVAASVTGPAEGSCTTGSKSRRHRGTGDGTGKASKLSATSPSATTGFCAVGARRRSSRTLNAVKKEELTSALELPEPSPSDAKRRTKGDTSTIGDCKPLRRRAAVAAKGEVCVQASEEGKGKKKARTKAKANIEKRGEVRERAIPPRLAEKAALIIQIMDKLYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAQEDLQQIIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWELTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHDASACPICSWVKKTGPGSPKALAELTCLNDYLASPTPTKKSSKNAIVYSERMLEMEQFRMKLEDS 566
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig792.16084.1 vs.
Match: Putative (endonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA3_ECTSI)

HSP 1 Score: 736 bits (1900), Expect = 2.730e-261
Identity = 387/456 (84.87%), Postives = 401/456 (87.94%), Query Frame = 1 
Query:  136 DEPKSSIIRLAPNTSQGGSTASATSAAGSAHPEPSETSRYFDSSPRVRGSKRKAAASVTGSAGGSCATGGRSSRLRGASDGTRRASRLSVTPPSAITAVYAVGAQRRSSGRLNAAKKEELTSALELPEPSPSGAKRRAKGDASTNGDRKPPRRRAVAATKEEVCVQASEEGKGXXXXXXXXXXXTEKGEGVRERVIPPRLAEKAALIIQVMDELYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPDPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRYDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMALFPRYSWAKLHLQFIYFGREHCQARVHDASACPICSWVKKTGPGSPKALGELTCLNDYLASPTPTKKSSKNAIVYSERKLEMEQFKMKLEDS 1503
            DEPKSSI R  PN +QGGST  ATSA GS  PEPSETS YFDSSP VRG KRKAAASV G AGGSC TGG+S R RGA D T +  +LS T PSA T V A G QRRSSGRLNA KKEELTSALELPEP PS AKRR KGDASTNGD KP RRRA  ATK EVC QASEEGKG            EKGEGVRER +PPRLAEKAALIIQ+MD+LYPDPPIPINH+DSFTLLCGVLLSAQTTDAQVNLVTQELFRVAP+PQSLSKMAHEDLQ+ IRSVGLAPTKAKHLIALSQQILDR+DGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMA+FPR SWAKLHLQFIYFGREHCQARVHDASACPICSWVKKTGPGSPKAL +LTCLNDYLASPTPTKKSSKNAIVYSERKLEMEQF+MKLEDS
Sbjct:   59 DEPKSSIRRQTPNANQGGSTTFATSAGGSGDPEPSETSHYFDSSPPVRGRKRKAAASVAGPAGGSCTTGGKSRRHRGAGDATGKYPKLSATSPSATTGVCAAGTQRRSSGRLNAVKKEELTSALELPEPPPSDAKRRTKGDASTNGDCKPRRRRAAVATKGEVCAQASEEGKGKKKARTKAKTKIEKGEGVRERAVPPRLAEKAALIIQIMDKLYPDPPIPINHMDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAHEDLQRTIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHDASACPICSWVKKTGPGSPKALAQLTCLNDYLASPTPTKKSSKNAIVYSERKLEMEQFRMKLEDS 514
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig792.16084.1 vs.
Match: DNA (glycosylase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEQ0_9STRA)

HSP 1 Score: 275 bits (702), Expect = 3.290e-84
Identity = 129/201 (64.18%), Postives = 158/201 (78.61%), Query Frame = 1 
Query:  760 QVMDELYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPDPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRYDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMALFPRYSWAKLHLQFIYFGREHCQARVHDASACPICSWVKKTGPGS 1362
            QV+D LYP+PP+P+NH D FTLLC VLLSAQTTD +VN VT ELF  AP P++L+ M+H D+  IIR+VGLAPTKA+HLIA +QQ+ +R+ G VP+T E LQ+LPGVGRKTA+VVM  AF  PAFPVDTHIHRLALRW L+++E N  +VE DL AL+P  ++ +LHLQFIYFGRE+CQAR H  S CP+CSW     P S
Sbjct:    3 QVLDRLYPEPPMPLNHTDPFTLLCAVLLSAQTTDGKVNEVTTELFARAPTPRALAAMSHSDVLSIIRTVGLAPTKARHLIATAQQLCERFGGAVPRTMEELQTLPGVGRKTASVVMSGAFGVPAFPVDTHIHRLALRWRLSRSETNVERVEHDLRALWPPAAYGRLHLQFIYFGREYCQARNHMPSRCPVCSWADNPLPTS 203
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig792.16084.1 vs.
Match: Endonuclease (III n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356FBE6_9BACT)

HSP 1 Score: 265 bits (676), Expect = 4.760e-81
Identity = 128/201 (63.68%), Postives = 153/201 (76.12%), Query Frame = 1 
Query:  739 EKAALIIQVMDELYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPDPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRYDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMALFPRYSWAKLHLQFIYFGREHCQARVHDASACPICSWV 1341
            EKA  I  ++DELY DPPIP++H D +TLL  VLLSAQTTD +VNLVT ELFR AP P+ + K+  E++  IIR+ GLAP KA+++ ALSQ +LD + G+VP   E L++LPGVG KTA+VVM+QAF  PAFPVDTHIHRLA RWGL+ N KN  K E DL A+FPR SWAKLHLQ IYFGREHC A  HD + CPICSW 
Sbjct:    5 EKAEKIHAILDELYEDPPIPLDHKDPYTLLVSVLLSAQTTDKRVNLVTPELFRRAPTPRKMVKLTVEEILAIIRTCGLAPGKARNIHALSQILLDEHGGRVPADMEKLEALPGVGHKTASVVMIQAFEQPAFPVDTHIHRLAARWGLS-NGKNVEKTERDLKAVFPRESWAKLHLQIIYFGREHCPALFHDLTECPICSWA 204
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig792.16084.1 vs.
Match: Endonuclease (III n=2 Tax=Archaea TaxID=2157 RepID=A0A3A5WA12_9ARCH)

HSP 1 Score: 264 bits (674), Expect = 7.200e-81
Identity = 121/202 (59.90%), Postives = 158/202 (78.22%), Query Frame = 1 
Query:  736 AEKAALIIQVMDELYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPDPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRYDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMALFPRYSWAKLHLQFIYFGREHCQARVHDASACPICSWV 1341
            +EKA++I+++++E YP+ P+P++H + F LL  VL+SAQTTD +VN VT ELFR  PD QS+SK++ E +Q IIR VGLAPTKA+++  LS+ ++D Y+G++P TFEGL+ LPGVG KTA VVM QAF  PAFP+DTHIHRLA RWGL+ N  N  K E+DL A+FP+ SW KLHLQ I+FGRE+C AR HD + CPICSW 
Sbjct:    4 SEKASIILEMLEEYYPETPVPLDHENPFQLLVAVLMSAQTTDKKVNQVTPELFRQGPDAQSMSKLSPETIQGIIREVGLAPTKARNISKLSKILVDSYEGQIPNTFEGLEGLPGVGHKTAGVVMAQAFGVPAFPIDTHIHRLAARWGLS-NGTNVVKTEKDLKAIFPKESWNKLHLQIIFFGREYCPARNHDLTKCPICSWA 204
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig792.16084.1 vs.
Match: Endonuclease (III n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E6C705_9EURY)

HSP 1 Score: 257 bits (656), Expect = 3.330e-78
Identity = 120/202 (59.41%), Postives = 152/202 (75.25%), Query Frame = 1 
Query:  736 AEKAALIIQVMDELYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPDPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRYDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMALFPRYSWAKLHLQFIYFGREHCQARVHDASACPICSWV 1341
            +EKA  I+Q++ E YP+ P+P+ H   F LL  VL+SAQTTD +VN VT ELFR  PD + ++K+  E +Q+IIR VGLAPTKAK++  L+Q +++ YD ++P TFEGL+SLPGVG KTA VVM QAF  PAFP+DTHIHRLA RWGL+ N  N  K E+DL A+FP+ SW KLHLQ I+FGRE+C AR HD + CPICSW 
Sbjct:    4 SEKAPRILQMLXEFYPETPVPLXHETPFQLLIAVLMSAQTTDKKVNEVTPELFRRGPDAEXMAKLTPETIQKIIREVGLAPTKAKNISKLAQILVESYDSEIPNTFEGLESLPGVGHKTAGVVMAQAFGVPAFPIDTHIHRLAARWGLS-NGTNVVKTEKDLKAIFPKESWNKLHLQIIFFGREYCPARNHDLTKCPICSWA 204
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig792.16084.1 vs.
Match: Endonuclease (III n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E6NQE6_9BACT)

HSP 1 Score: 257 bits (656), Expect = 4.350e-78
Identity = 124/201 (61.69%), Postives = 153/201 (76.12%), Query Frame = 1 
Query:  739 EKAALIIQVMDELYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPDPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRYDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMALFPRYSWAKLHLQFIYFGREHCQARVHDASACPICSWV 1341
            EKA  I  ++DELY +PPIP+ H D +TLL  VLLSAQTTD +VN+VT ELFR AP P+ + K+  +++  IIR+ GLAP KA+++ ALS+ +L+ + GKVP   E L++LPGVG KTA+VVM+QAF+ PAFPVDTHIHRLA RWGL+ N KN  K E DL A+FP  SWAKLHLQ IYFGREHC AR HD + CPICSW 
Sbjct:    5 EKAVKIHAILDELYKNPPIPLVHKDPYTLLVSVLLSAQTTDKRVNMVTPELFRRAPTPRKMVKLDVDEILGIIRTCGLAPGKARNIHALSRILLEEHGGKVPADMEKLEALPGVGHKTASVVMIQAFDRPAFPVDTHIHRLAARWGLS-NGKNVEKTERDLKAVFPERSWAKLHLQIIYFGREHCPARGHDLAQCPICSWA 204
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig792.16084.1 vs.
Match: Endonuclease (III n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E3FQM8_9EURY)

HSP 1 Score: 254 bits (650), Expect = 2.570e-77
Identity = 117/202 (57.92%), Postives = 153/202 (75.74%), Query Frame = 1 
Query:  736 AEKAALIIQVMDELYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPDPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRYDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMALFPRYSWAKLHLQFIYFGREHCQARVHDASACPICSWV 1341
            +EKA +I+++++E YP+ P+P++H   F LL  VL+SAQTTD +VN VT ELFR  PD ++++ ++ + +Q IIR VGLAPTKAK++  LS  + D Y G++P TFEGL+SLPGVG KTA VVM QAF  PAFP+DTHIHRLA RWGL+ N  N  + E+DL A+FP+ SW KLHLQ I+FGRE+C AR HD + CPICSW 
Sbjct:    4 SEKAEIILKMLEEYYPETPVPLDHETPFQLLIAVLMSAQTTDKKVNEVTPELFRQGPDAKAMANLSPQKIQTIIREVGLAPTKAKNIFKLSNILCDDYGGEIPDTFEGLESLPGVGHKTAGVVMAQAFGVPAFPIDTHIHRLAARWGLS-NGTNVVRTEKDLKAIFPKESWNKLHLQIIFFGREYCPARNHDLTKCPICSWA 204
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig792.16084.1 vs.
Match: Endonuclease (III n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V5RM63_9BACT)

HSP 1 Score: 254 bits (648), Expect = 3.510e-77
Identity = 121/202 (59.90%), Postives = 153/202 (75.74%), Query Frame = 1 
Query:  736 AEKAALIIQVMDELYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPDPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRYDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMALFPRYSWAKLHLQFIYFGREHCQARVHDASACPICSWV 1341
            AEKA LI++ +DELYP PPIP++H D FTLL  V+LSAQTTDA VN VT ELF  APDP+ LS+M  E++ QII+  GLAP+KAK L  L++ +++++  +VPQ+FE L++LPGVG KTA+VVM QAF  PAFPVDTHIHRLA RWGL+   K+  + E DL  +FP+  W KLHLQ IYFGRE+C AR HD   CP+CS +
Sbjct:    4 AEKARLIMKTLDELYPQPPIPLHHSDPFTLLVSVVLSAQTTDAMVNRVTPELFERAPDPEKLSQMTEEEILQIIKPCGLAPSKAKALRGLAKILVEKHASRVPQSFEELEALPGVGHKTASVVMAQAFGIPAFPVDTHIHRLAARWGLSSG-KSVVQTERDLKRIFPKEHWNKLHLQIIYFGREYCPARNHDPQKCPLCSKI 204
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig792.16084.1 vs.
Match: Endonuclease (III n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A6N2D4Y0_9DELT)

HSP 1 Score: 254 bits (648), Expect = 6.620e-77
Identity = 120/202 (59.41%), Postives = 151/202 (74.75%), Query Frame = 1 
Query:  736 AEKAALIIQVMDELYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPDPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRYDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMALFPRYSWAKLHLQFIYFGREHCQARVHDASACPICSWV 1341
            AEKA  I   ++ELYP+ PIP++H+D FTLL  VLLSAQTTD +VN VT  LF VAP P+ +  +  ED++++IR +GLAP KAK L  L +Q+++ + G+VP +FE L++LPGVG KTA+VVM QAF  PAFPVDTHIHRLA RWGL+   ++  K E DL  +FPR SW +LHLQ I+FGREHC AR HD SACPICSW 
Sbjct:    4 AEKADRIRMQLEELYPETPIPLDHVDPFTLLVAVLLSAQTTDRKVNEVTPRLFAVAPTPERMMALEMEDIRELIRELGLAPQKAKALYGLCRQLVETHGGEVPVSFEALEALPGVGHKTASVVMAQAFGVPAFPVDTHIHRLAARWGLSDG-RSVEKTERDLKRVFPRESWNRLHLQIIFFGREHCPARYHDLSACPICSWA 204
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig792.16084.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ENDO3c1.730e-27082.20domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Putative2.730e-26184.87endonuclease n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
DNA3.290e-8464.18glycosylase (Fragment) n=1 Tax=Tribonema minus Tax... [more]
Endonuclease4.760e-8163.68III n=1 Tax=Planctomycetes bacterium TaxID=2026780... [more]
Endonuclease7.200e-8159.90III n=2 Tax=Archaea TaxID=2157 RepID=A0A3A5WA12_9A... [more]
Endonuclease3.330e-7859.41III n=1 Tax=Euryarchaeota archaeon TaxID=2026739 R... [more]
Endonuclease4.350e-7861.69III n=1 Tax=Planctomycetes bacterium TaxID=2026780... [more]
Endonuclease2.570e-7757.92III n=1 Tax=Euryarchaeota archaeon TaxID=2026739 R... [more]
Endonuclease3.510e-7759.90III n=1 Tax=Bacteroidetes bacterium TaxID=1898104 ... [more]
Endonuclease6.620e-7759.41III n=1 Tax=Deltaproteobacteria bacterium TaxID=20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig792contigE_fasciculatus_S2_contig792:1070..6227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score741.1
Seed ortholog evalue3.4e-211
Seed eggNOG ortholog2880.D8LEA3
Preferred nameNTH1
Model size1947
KEGG koko:K10773
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
EggNOG OGsCOG0177@1,KOG1921@2759
Ec32 ortholog descriptionDNA glycosylase
Ec32 orthologEc-00_001490.1
EC4.2.99.18
Cds size1503
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig792.16084.1prot_E_fasciculatus_S2_contig792.16084.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig792 1073..5786 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842453.0078263-UTR-E_fasciculatus_S2_contig792:1069..10721696842453.0078263-UTR-E_fasciculatus_S2_contig792:1069..1072Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig792 1070..1072 +
1696842453.117062-UTR-E_fasciculatus_S2_contig792:5786..62271696842453.117062-UTR-E_fasciculatus_S2_contig792:5786..6227Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig792 5787..6227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842453.018351-CDS-E_fasciculatus_S2_contig792:1072..18791696842453.018351-CDS-E_fasciculatus_S2_contig792:1072..1879Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig792 1073..1879 +
1696842453.026918-CDS-E_fasciculatus_S2_contig792:2224..22811696842453.026918-CDS-E_fasciculatus_S2_contig792:2224..2281Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig792 2225..2281 +
1696842453.0354922-CDS-E_fasciculatus_S2_contig792:2735..28271696842453.0354922-CDS-E_fasciculatus_S2_contig792:2735..2827Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig792 2736..2827 +
1696842453.049082-CDS-E_fasciculatus_S2_contig792:3151..32731696842453.049082-CDS-E_fasciculatus_S2_contig792:3151..3273Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig792 3152..3273 +
1696842453.0607436-CDS-E_fasciculatus_S2_contig792:3767..38911696842453.0607436-CDS-E_fasciculatus_S2_contig792:3767..3891Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig792 3768..3891 +
1696842453.072156-CDS-E_fasciculatus_S2_contig792:4189..42801696842453.072156-CDS-E_fasciculatus_S2_contig792:4189..4280Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig792 4190..4280 +
1696842453.0836024-CDS-E_fasciculatus_S2_contig792:4663..47141696842453.0836024-CDS-E_fasciculatus_S2_contig792:4663..4714Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig792 4664..4714 +
1696842453.0966089-CDS-E_fasciculatus_S2_contig792:4997..51291696842453.0966089-CDS-E_fasciculatus_S2_contig792:4997..5129Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig792 4998..5129 +
1696842453.1064968-CDS-E_fasciculatus_S2_contig792:5759..57861696842453.1064968-CDS-E_fasciculatus_S2_contig792:5759..5786Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig792 5760..5786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig792.16084.1

>prot_E_fasciculatus_S2_contig792.16084.1 ID=prot_E_fasciculatus_S2_contig792.16084.1|Name=mRNA_E_fasciculatus_S2_contig792.16084.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=501bp
MQAGTRMARRTRSGFCAVKKEELDDEAFGTDAPSSLPTGTCVVKDEPKSS
IIRLAPNTSQGGSTASATSAAGSAHPEPSETSRYFDSSPRVRGSKRKAAA
SVTGSAGGSCATGGRSSRLRGASDGTRRASRLSVTPPSAITAVYAVGAQR
RSSGRLNAAKKEELTSALELPEPSPSGAKRRAKGDASTNGDRKPPRRRAV
AATKEEVCVQASEEGKGKKKPRTKAKAKTEKGEGVRERVIPPRLAEKAAL
IIQVMDELYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVA
PDPQSLSKMAHEDLQQIIRSVGLAPTKAKHLIALSQQILDRYDGKVPQTF
EGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNAS
KVEEDLMALFPRYSWAKLHLQFIYFGREHCQARVHDASACPICSWVKKTG
PGSPKALGELTCLNDYLASPTPTKKSSKNAIVYSERKLEMEQFKMKLEDS
*
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mRNA from alignment at E_fasciculatus_S2_contig792:1070..6227+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig792.16084.1 ID=mRNA_E_fasciculatus_S2_contig792.16084.1|Name=mRNA_E_fasciculatus_S2_contig792.16084.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5158bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig792:1070..6227+ (Ectocarpus fasciculatus EfasUO2)
CCCATGCAAGCAGGCACACGTATGGCTCGGCGCACGCGATCCGGGTTCTG
TGCTGTCAAGAAGGAAGAGCTCGATGACGAGGCATTCGGCACCGACGCCC
CCTCCTCACTGCCAACGGGAACATGTGTAGTCAAAGACGAGCCCAAGTCA
TCGATCATAAGGCTAGCGCCGAACACAAGCCAAGGCGGCTCGACGGCTTC
CGCAACCTCCGCCGCAGGCAGCGCTCATCCTGAACCCTCTGAGACTTCTC
GCTATTTTGATTCTTCCCCGCGTGTGAGAGGGAGCAAGCGGAAGGCGGCA
GCAAGTGTCACCGGCTCCGCCGGCGGTAGCTGTGCGACGGGCGGCAGGAG
CAGCCGCCTTCGAGGTGCCAGCGATGGCACCCGAAGAGCTTCGAGGCTGT
CTGTCACACCCCCGAGCGCGATAACCGCCGTTTACGCGGTGGGCGCCCAA
CGCCGGAGTAGCGGCAGACTCAACGCGGCGAAGAAAGAGGAGCTGACAAG
CGCGCTCGAACTCCCAGAGCCATCTCCGTCAGGTGCCAAGCGGAGGGCGA
AAGGCGATGCCTCCACGAACGGGGATCGCAAACCCCCGAGGAGGCGGGCT
GTGGCCGCTACCAAGGAGGAGGTTTGCGTGCAGGCTTCCGAGGAGGGAAA
GGGGAAGAAGAAGCCCCGGACGAAGGCCAAAGCCAAGACCGAAAAGGGGG
AAGGTGTTCGGGAAAGGGTTATTCCGCCGCGCTTGGCGGAGAAGGCGGCG
CTGATAATCCAGGTTATGGACGAGCTTTACCCGGACCCGCCTATACCGAT
CAACCACCTGGTGAGGAGTACCACGTATATGTCCCGCAGCACACAGTGAT
TTGTCGAGATGCACGCGGGGGTGCCTTGATCTAGAGCAATGTGGCAGGCG
CGATCGACAACTCGTAAGACAGCCCTTGTTGAGGAGGAGGTGCTTGTGTT
GCTCGGGAAGGCTAAGTCACGTCGAATACCACGGAAGTTTTTAGCCACAA
GTTGGTAGGGTACCTGAGACGTACTCTATAACCGAGAATTTGATGTGCTG
TGTGCGCCACTCATGTATCATCCTGCCGTATCATTTGCTAGCACTTCTTC
TGCCGTGCCCTGCTTACCCATTACCGTTTTGATCACTCTCCTGTTCCGAG
CGCAGGACAGCTTCACGTTGCTTTGCGGGGTGCTACTCTCTGCTCAGACC
ACCGATGCTCAGGTACGCCGCGTGCTCGGCTCTTTAGCCTCTTAGGATTC
GGTACTTTTTCTTAACACGCAGTGTGAAGACTTGAACGCATTCCTTCCAT
CGAGGTATTTTCTCAGGCGGGCAATGTTTCTGTGATTGTATGAAGTTTAT
GTTCCAAGAAGAAACCGAGACACAATTTCTCTTGCTACTTGCGGATAACT
AGACTCCCACGGGAGAGCCCCCTTGCTCGTGGCGGTGAGCAGTGGCTTCT
GTGTGGGTTTTAAATGTCACCATGGGTCATGTGACAGACCCTCTATTTTG
GGCTTACGATGCGTCAGATGCCTTGCTATATAGACGAGACGTTGCTCTTC
GTGTTGGCGAACGTTTCACCCCGCTTGCACTCTTCCTCTGGCACTTGTTC
ATTGGCAATGCGGTGTATTATGGATTCGTCCTTGACCTTGCTGCGATCAC
ACACCGCACCGATTAGGTTAACCTGGTGACGCAGGAGCTGTTCAGGGTGG
CGCCGGATCCGCAGTCCTTGTCCAAGATGGCACATGAGGATCTGCAACAG
ATAATCAGGTACAGATATAACGCTGCCGTGCACTTTTCGCGCAGCGCTTT
GTTAACGTCCGGTCTTGCCGACTGGGGTGGAAATTTCTTTGACGAATTTA
CATGAACGACACCGATAGATACGACTAGCGACGAATTTCGATGGCACGAT
GGCAGAAATGCCGGGTCAGATGGCACGGGCACATATCATATTTTCAAACT
TTCGATTGGATCTCACTGCTACATTGATTTGCACCGTATTGACACAGCAC
GTTTGTTGGTTTGTTTGGAACGACGGAGTTTGCCGTGTGTTTTGACTTGG
TGCCTGTTGCGCCGCCGCCACTTGATTGCCAGATCCGTCGGACTTGCACC
TACCAAGGCGAAGCATCTAATCGCGCTGTCGCAGCAGATACTAGACCGCT
ACGACGGCAAGGTGCCCCAGACCTTCGAAGGCCTCCAGAGTCTGCCCGGC
GTCGGTACGTGGTGGTTCGTTCCAGATTTTGGGATAGGTTGTCCCTGTAA
ATGTTGTTACGAGTTTCGGGTGTTTGGGTGTTTGGTAAACCGTTCATCGG
AGTGGGAGTGTGCGGACACTCATTGTTCTTTGTTCTTTTGTCGGCAAGCT
CCTGCTACGAAGGCTGCTCCTGCTACTCCTACCCCGCTGGACCTCCTACA
CGTTACGGCCCACGCTGACGTCTAACCTGGTATCGAATCAATGGACTATC
GCCATGTTTGCGATTCATTCGCGTGAGCTTTCCCCTTGAGCGCTCTGGTG
GGCTCAATTTTACGGCTGGAGAATGGCTCATCTGGATAAATTCGCCTCGT
ACGATCAAATAATCTTGGCTCAACTGGATAAATTCGCCTCGTACGATCAA
AGAATCTTCCCCACACTCAAAGCTCTCGAACACCGTTGACCGCTCAACGG
TGACGACATTTCCATGATGAATCCGTCGTAAACGCCATACCGACCCAGGG
CGCAAAACTGCAGCGGTGGTGATGGTCCAGGCCTTCAACACCCCCGCCTT
TCCTGTGGACACACACATTCACCGATTGGCCCTTCGCTGGGGTCTGACGA
AGAACGAAAAGAACGCCAGCAAGTGAGAGGCGTAGACGCCCATCAAATCA
AACTGCGTGTTCTTACTGTTAGCGCAACGTGTTGTTGAGGGACGGTTTCA
TGGTTATTTTGTCGCTGAGTTAGATCGAGGCCGTTTTCAAACGGTGCTTG
CCGTTGGTGCAACGCGTTGTTGAGGGTTTGTTTCATGGTTGATTCTTGTT
CAGTTTGATGAATTGAGGCTGTACCCGGCTATCATTGCGGATGTGAAACC
TGCTGCCCCACCCCCTCGCTTTTTACGCCCCACCGCACATCCGTACCTAA
CCTCACGCTCTTTTGTGAAGGGTGGAAGAGGACCTTATGGCCCTGTTCCC
AAGATACTCGTGGGCCAAGTTGCACCTTCAGTTCATCTACTTCGGCCGTG
AGCACTGCCAGGTGACGCAAAAGGAAACCACATGGAGTAGCGCACGTTTG
ATTGTGTCAGTCACGAGCGCGCGCGTGAAGAGAAGACTTCGCAGTGTTGG
CTTCATCAACTGCTCCCATTTATCCCATCGCAGCCGCCGAGGTGGTGTAA
ACAACGGCTGAATCCAAACGACGGCTCCCCCGCATACCTAGGAGAGGGCG
GGTGTAGGCCTGACGGAAAGCGGAACCCTTTCCATTTCGAAGTTTATCGT
AACGATTCACGTGCACGGCGTTTGACGTCGAAGGTGCGAAAAATATTACG
CCCCCCGCTCGATCGATTCTACGAGGCTCGACGAGATAACCTGCTGCCCT
TGGCCCGATGGTGACTTGACTCTCTTTTCGTCCGGAATTTTCAGGCTCGC
GTGCACGACGCTTCGGCCTGCCCCATCTGCTCTTGGGTGAAGAAGGTACG
GCTCTCTGGGACCGTGATATGGTAGTGGTGGCCATGCTGTCGTCGTTATG
TGGCTGGCGTCTCGTTGTCTCTTTTCATTCCACAGAGTGAATCCAGCAAT
GTCCTGCCGTCCAGGGCAGGGACCTGCTCTTTGCAGTAGTATGCTTTGCT
TGCTCCTTCAGCGTCTTGGATTTGGTGGATTGCGTGCATGTCTGGCTAAC
CTAAGGCTAACACGAGTTCGTACATCGTGGTTAATGGCGCGTGTGCGTGT
TTTGATCTCTCTTCCTGTCTTTTCGTAGACTGGACCTGGCTCCCCCAAGG
CGTTGGGCGAGCTGACCTGCCTGAACGACTACTTGGCATCCCCTACTCCC
ACCAAGAAGTCTAGCAAGAATGCTATCGTCTACAGCGAGAGGAAGCTAGA
GATGGAACAGGTACATATTCTGCTCCTGCGTGGGGCGCGTTGTATGCAGC
ATCTCTTTGCCTGTTTTGGGCGCTGGTCGAAAGGGAGATGTCGCACTCCA
CCTACCAGGAAGTTCGTGAGGAAGGGTTTCGTTCGGGTGTAGTGTTAGTT
TTTCGAATGCAATCTCTATGCGATCGCTTCAAGGCTGGTCGTGAATCCCT
AGCAATTCACTGCTTCAGTCCAGCAGAGGTTGTCGAGAGTCAAGCCATGA
GACCCAGAGTGTGCGTGTTTTCACTCAAGGCAAATTTCACGTGTCTTCGA
TGTTGTTGCACAGCTTTTGGTGCTCGTCTGCATCACGCCAAACCCTCCTC
CCACGTTAGGAAGTACGTCGATCATTTTCCACGCCTCGTAGGAATTGTGC
AAGATAGATGCGCAGCCGCAAGCGGAACCGGCACATGGTTAGCACAAGGG
GAGGGATTCATTCTGCCTCACATTTTTTAGTGCGGCAGAGTGATAAAATA
CGTTTCTCGTGTATGCGAAATGTCCCGAATTTTCAATCCGCAGCATCTTT
TTGCCGTGGAGGTTATTTGTGAAACTTCGTTTGCTGAAGCATCTACGTTT
GTCTCGTCTGTTGGCTTCGGTGCGTTGTTCGGCCGTGCAGTTCAAAATGA
AACTGGAAGACAGCTGAGTTGGCACCGACTGAGGGAGGCCAGCGGCACAA
GCGACCCTCAGACCTGTGCGGGACCAGAGGACGGTGCTTCGTGGAAACAG
CTACCGTGCGAGGGTGCTCATACATGAACCTGGTTGAGGACCGACTCGGA
AAATATGCGTTTCTTGTTCAGGCGTGGAGATCAGCCGTCGTGTTTGAGTG
ATAGTTTACTCTCACCGGATTGTTTACGAAGCGGGTGGGAGTCTGATGGA
CGCGGGGCTTGAGCACAGATCGGTTGTTACCTTTGCCGCACTGTACGCTC
CAAAGAGCCATCTCACGATGGATTCGTTTTCTACCAGGCATCATAAATTC
AAATCACTTTTCTTGCAATTGTTTCATGGCAGACGACAACAAGGTGGCTA
AAGGTCTACCGCCGTCAGGTCAGAAAGCGCGGATGTCAACTATTTCTCGC
TTTCTCGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig792:1070..6227+

>mRNA_E_fasciculatus_S2_contig792.16084.1 ID=mRNA_E_fasciculatus_S2_contig792.16084.1|Name=mRNA_E_fasciculatus_S2_contig792.16084.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1503bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig792:1070..6227+ (Ectocarpus fasciculatus EfasUO2)
ATGCAAGCAGGCACACGTATGGCTCGGCGCACGCGATCCGGGTTCTGTGC
TGTCAAGAAGGAAGAGCTCGATGACGAGGCATTCGGCACCGACGCCCCCT
CCTCACTGCCAACGGGAACATGTGTAGTCAAAGACGAGCCCAAGTCATCG
ATCATAAGGCTAGCGCCGAACACAAGCCAAGGCGGCTCGACGGCTTCCGC
AACCTCCGCCGCAGGCAGCGCTCATCCTGAACCCTCTGAGACTTCTCGCT
ATTTTGATTCTTCCCCGCGTGTGAGAGGGAGCAAGCGGAAGGCGGCAGCA
AGTGTCACCGGCTCCGCCGGCGGTAGCTGTGCGACGGGCGGCAGGAGCAG
CCGCCTTCGAGGTGCCAGCGATGGCACCCGAAGAGCTTCGAGGCTGTCTG
TCACACCCCCGAGCGCGATAACCGCCGTTTACGCGGTGGGCGCCCAACGC
CGGAGTAGCGGCAGACTCAACGCGGCGAAGAAAGAGGAGCTGACAAGCGC
GCTCGAACTCCCAGAGCCATCTCCGTCAGGTGCCAAGCGGAGGGCGAAAG
GCGATGCCTCCACGAACGGGGATCGCAAACCCCCGAGGAGGCGGGCTGTG
GCCGCTACCAAGGAGGAGGTTTGCGTGCAGGCTTCCGAGGAGGGAAAGGG
GAAGAAGAAGCCCCGGACGAAGGCCAAAGCCAAGACCGAAAAGGGGGAAG
GTGTTCGGGAAAGGGTTATTCCGCCGCGCTTGGCGGAGAAGGCGGCGCTG
ATAATCCAGGTTATGGACGAGCTTTACCCGGACCCGCCTATACCGATCAA
CCACCTGGACAGCTTCACGTTGCTTTGCGGGGTGCTACTCTCTGCTCAGA
CCACCGATGCTCAGGTTAACCTGGTGACGCAGGAGCTGTTCAGGGTGGCG
CCGGATCCGCAGTCCTTGTCCAAGATGGCACATGAGGATCTGCAACAGAT
AATCAGATCCGTCGGACTTGCACCTACCAAGGCGAAGCATCTAATCGCGC
TGTCGCAGCAGATACTAGACCGCTACGACGGCAAGGTGCCCCAGACCTTC
GAAGGCCTCCAGAGTCTGCCCGGCGTCGGGCGCAAAACTGCAGCGGTGGT
GATGGTCCAGGCCTTCAACACCCCCGCCTTTCCTGTGGACACACACATTC
ACCGATTGGCCCTTCGCTGGGGTCTGACGAAGAACGAAAAGAACGCCAGC
AAGGTGGAAGAGGACCTTATGGCCCTGTTCCCAAGATACTCGTGGGCCAA
GTTGCACCTTCAGTTCATCTACTTCGGCCGTGAGCACTGCCAGGCTCGCG
TGCACGACGCTTCGGCCTGCCCCATCTGCTCTTGGGTGAAGAAGACTGGA
CCTGGCTCCCCCAAGGCGTTGGGCGAGCTGACCTGCCTGAACGACTACTT
GGCATCCCCTACTCCCACCAAGAAGTCTAGCAAGAATGCTATCGTCTACA
GCGAGAGGAAGCTAGAGATGGAACAGTTCAAAATGAAACTGGAAGACAGC
TGA
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