mRNA_E_fasciculatus_S2_contig7916.16082.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7916.16082.1
Unique NamemRNA_E_fasciculatus_S2_contig7916.16082.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7916.16082.1 vs.
Match: AAA (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q9_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 1.160e-76
Identity = 125/131 (95.42%), Postives = 129/131 (98.47%), Query Frame = 1 
Query:    1 MLELLNQLDGFSSNDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPSEEARGRILQIHSRKMNVDKSDVNFEELARSCDDFNGAQLKAVCVEAGMLALRREAEQARN-NMMEGINVVSAKKKGSLDYYA 390
            MLELLNQLDGFSSNDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPSEEARGRILQIHSRKMNVDKSDVNFEELARSCDDFNGAQLKAVCVEAGMLALRREAEQ ++ ++MEGINVVSAKKKGSLDYYA
Sbjct:  323 MLELLNQLDGFSSNDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPSEEARGRILQIHSRKMNVDKSDVNFEELARSCDDFNGAQLKAVCVEAGMLALRREAEQIKHEDLMEGINVVSAKKKGSLDYYA 453
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BLAST of mRNA_E_fasciculatus_S2_contig7916.16082.1 vs.
Match: 26S (protease regulatory subunit 6A-A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA2_9STRA)

HSP 1 Score: 225 bits (574), Expect = 4.160e-70
Identity = 117/131 (89.31%), Postives = 123/131 (93.89%), Query Frame = 1 
Query:    1 MLELLNQLDGFSSNDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPSEEARGRILQIHSRKMNVDKSDVNFEELARSCDDFNGAQLKAVCVEAGMLALRREAEQARN-NMMEGINVVSAKKKGSLDYYA 390
            MLELL+QLDGFSSNDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPSEEAR RILQIHSRKMNV+K DVNFEEL+RSCDDFNGAQLKAVCVEAGMLALRR A + R+ + MEGI VVSAKKKGSLDYYA
Sbjct:  305 MLELLSQLDGFSSNDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPSEEARARILQIHSRKMNVNKGDVNFEELSRSCDDFNGAQLKAVCVEAGMLALRRGASEIRHEDFMEGIAVVSAKKKGSLDYYA 435
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BLAST of mRNA_E_fasciculatus_S2_contig7916.16082.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPM6_HETAK)

HSP 1 Score: 218 bits (555), Expect = 3.480e-69
Identity = 110/131 (83.97%), Postives = 121/131 (92.37%), Query Frame = 1 
Query:    1 MLELLNQLDGFSSNDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPSEEARGRILQIHSRKMNVDKSDVNFEELARSCDDFNGAQLKAVCVEAGMLALRREAEQARN-NMMEGINVVSAKKKGSLDYYA 390
            MLELL+QLDGF SNDKIKVIAATNRPDVLDPALLRSGRLDRK+ELPHP+EEAR RILQIHSRKMNVDK DVNF+EL RSCDDFNGAQLKAVCVEAGMLALRR A + ++ + MEGI VV+AKKKG+L+YYA
Sbjct:  147 MLELLSQLDGFQSNDKIKVIAATNRPDVLDPALLRSGRLDRKVELPHPTEEARARILQIHSRKMNVDKEDVNFDELGRSCDDFNGAQLKAVCVEAGMLALRRAAAEIKHEDFMEGITVVAAKKKGNLNYYA 277
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BLAST of mRNA_E_fasciculatus_S2_contig7916.16082.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMF4_AURAN)

HSP 1 Score: 212 bits (539), Expect = 8.600e-69
Identity = 108/131 (82.44%), Postives = 119/131 (90.84%), Query Frame = 1 
Query:    1 MLELLNQLDGFSSNDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPSEEARGRILQIHSRKMNVDKSDVNFEELARSCDDFNGAQLKAVCVEAGMLALRREAEQARN-NMMEGINVVSAKKKGSLDYYA 390
            MLELL+QLDGFSS++KIKVIAATNRPDVLDPALLRSGRLDRKIELPHP+E AR RI+QIHSRKMNVDK D NFEELAR CDDFNGAQ KA+CVEAGMLALRREA   ++ + MEGI +V+AKKKGSLDYYA
Sbjct:    1 MLELLSQLDGFSSDEKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPTEMARARIMQIHSRKMNVDKDDSNFEELARCCDDFNGAQCKAICVEAGMLALRREATTVKHEDFMEGIALVAAKKKGSLDYYA 131
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BLAST of mRNA_E_fasciculatus_S2_contig7916.16082.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PEK8_HETAK)

HSP 1 Score: 218 bits (555), Expect = 3.110e-67
Identity = 110/131 (83.97%), Postives = 121/131 (92.37%), Query Frame = 1 
Query:    1 MLELLNQLDGFSSNDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPSEEARGRILQIHSRKMNVDKSDVNFEELARSCDDFNGAQLKAVCVEAGMLALRREAEQARN-NMMEGINVVSAKKKGSLDYYA 390
            MLELL+QLDGF SNDKIKVIAATNRPDVLDPALLRSGRLDRK+ELPHP+EEAR RILQIHSRKMNVDK DVNF+EL RSCDDFNGAQLKAVCVEAGMLALRR A + ++ + MEGI VV+AKKKG+L+YYA
Sbjct:  307 MLELLSQLDGFQSNDKIKVIAATNRPDVLDPALLRSGRLDRKVELPHPTEEARARILQIHSRKMNVDKEDVNFDELGRSCDDFNGAQLKAVCVEAGMLALRRAAAEIKHEDFMEGITVVAAKKKGNLNYYA 437
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BLAST of mRNA_E_fasciculatus_S2_contig7916.16082.1 vs.
Match: AAA (domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJM7_AURAN)

HSP 1 Score: 216 bits (550), Expect = 1.350e-66
Identity = 110/131 (83.97%), Postives = 121/131 (92.37%), Query Frame = 1 
Query:    1 MLELLNQLDGFSSNDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPSEEARGRILQIHSRKMNVDKSDVNFEELARSCDDFNGAQLKAVCVEAGMLALRREAEQARN-NMMEGINVVSAKKKGSLDYYA 390
            MLELL+QLDGFSS+DKIKVIAATNRPDVLDPALLRSGRLDRKIELPHP+E AR RI+QIHSRKMNVDK DVNFEELAR CDDFNGAQ KAVCVEAGMLALRREA   ++ + MEGI++V+AKKKGSL+YYA
Sbjct:  297 MLELLSQLDGFSSDDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPTETARARIMQIHSRKMNVDKDDVNFEELARCCDDFNGAQCKAVCVEAGMLALRREAAFVKHEDFMEGISIVAAKKKGSLEYYA 427
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BLAST of mRNA_E_fasciculatus_S2_contig7916.16082.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D291_9STRA)

HSP 1 Score: 216 bits (551), Expect = 1.370e-66
Identity = 109/131 (83.21%), Postives = 121/131 (92.37%), Query Frame = 1 
Query:    1 MLELLNQLDGFSSNDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPSEEARGRILQIHSRKMNVDKSDVNFEELARSCDDFNGAQLKAVCVEAGMLALRREAEQARN-NMMEGINVVSAKKKGSLDYYA 390
            MLELL+QLDGFSSND IKVIAATNRPDVLDPALLRSGRLDRKIELPHP+EEAR RI++IHSRKMNVDK DVNFEEL+R CDDFNGAQ+KA+CVEAGMLALRREAE  ++ + ME I VV+AKKKG+LDYYA
Sbjct:  311 MLELLSQLDGFSSNDNIKVIAATNRPDVLDPALLRSGRLDRKIELPHPTEEARARIMEIHSRKMNVDKEDVNFEELSRCCDDFNGAQVKAICVEAGMLALRREAEAIKHEDFMEAIAVVAAKKKGTLDYYA 441
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BLAST of mRNA_E_fasciculatus_S2_contig7916.16082.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WER3_9STRA)

HSP 1 Score: 214 bits (546), Expect = 1.550e-65
Identity = 108/131 (82.44%), Postives = 121/131 (92.37%), Query Frame = 1 
Query:    1 MLELLNQLDGFSSNDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPSEEARGRILQIHSRKMNVDKSDVNFEELARSCDDFNGAQLKAVCVEAGMLALRREAEQARN-NMMEGINVVSAKKKGSLDYYA 390
            MLELL+QLDGFSSND IKVIAATNRPDVLDPALLRSGRLDRKIELPHP+EEAR RI+QIHSRKMNVDK DVNFEELAR C+DFNGAQ+KA+CVEAGMLALRRE+   ++ + ME I+VV+AKKKGSL+YYA
Sbjct:  340 MLELLSQLDGFSSNDNIKVIAATNRPDVLDPALLRSGRLDRKIELPHPNEEARARIMQIHSRKMNVDKEDVNFEELARCCEDFNGAQVKAICVEAGMLALRRESSVIKHEDFMEAISVVAAKKKGSLEYYA 470
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BLAST of mRNA_E_fasciculatus_S2_contig7916.16082.1 vs.
Match: Hypothetical (protein n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1KQ63_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.890e-65
Identity = 108/131 (82.44%), Postives = 119/131 (90.84%), Query Frame = 1 
Query:    1 MLELLNQLDGFSSNDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPSEEARGRILQIHSRKMNVDKSDVNFEELARSCDDFNGAQLKAVCVEAGMLALRREAEQARN-NMMEGINVVSAKKKGSLDYYA 390
            MLELL+QLDGFSS++KIKVIAATNRPDVLDPALLRSGRLDRKIELPHP+E AR RI+QIHSRKMNVDK D NFEELAR CDDFNGAQ KA+CVEAGMLALRREA   ++ + MEGI VV+AKKKG+LDYYA
Sbjct:  292 MLELLSQLDGFSSDEKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPTEMARARIMQIHSRKMNVDKDDTNFEELARCCDDFNGAQCKAICVEAGMLALRREANTVKHEDFMEGIAVVAAKKKGALDYYA 422
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BLAST of mRNA_E_fasciculatus_S2_contig7916.16082.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D1P6_9STRA)

HSP 1 Score: 213 bits (541), Expect = 3.890e-65
Identity = 106/131 (80.92%), Postives = 120/131 (91.60%), Query Frame = 1 
Query:    1 MLELLNQLDGFSSNDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPSEEARGRILQIHSRKMNVDKSDVNFEELARSCDDFNGAQLKAVCVEAGMLALRREAEQARNN-MMEGINVVSAKKKGSLDYYA 390
            MLELL+QLDGFSSND IKVIAATNRPD+LDPALLRSGRLDRKIELPHP+EEAR +I+QIHSRKMNVDK DVNF EL+R CDDFNGAQ+KA+C+EAGMLALRREA   +++  ME I+VV+AKKKGSLDYYA
Sbjct:  307 MLELLSQLDGFSSNDNIKVIAATNRPDILDPALLRSGRLDRKIELPHPNEEARAKIMQIHSRKMNVDKEDVNFVELSRCCDDFNGAQVKAICIEAGMLALRREATVIKHDDFMEAISVVAAKKKGSLDYYA 437
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7916.16082.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
AAA1.160e-7695.42domain-containing protein n=1 Tax=Ectocarpus silic... [more]
26S4.160e-7089.31protease regulatory subunit 6A-A n=1 Tax=Tribonema... [more]
Hypothetical3.480e-6983.97protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Uncharacterized8.600e-6982.44protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Hypothetical3.110e-6783.97protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
AAA1.350e-6683.97domain-containing protein n=1 Tax=Aureococcus anop... [more]
Hypothetical1.370e-6683.21protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Hypothetical1.550e-6582.44protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical1.890e-6582.44protein n=4 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical3.890e-6580.92protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7916contigE_fasciculatus_S2_contig7916:689..2231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score243.4
Seed ortholog evalue5.8e-62
Seed eggNOG ortholog2880.D7G4Q9
Model size393
KEGG koko:K03065
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000502,GO:0000731,GO:0002020,GO:0002082,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0005829,GO:0006139,GO:0006140,GO:0006163,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006914,GO:0006919,GO:0006950,GO:0006974,GO:0007034,GO:0007041,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009109,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010918,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016504,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0018193,GO:0018196,GO:0018279,GO:0019058,GO:0019079,GO:0019219,GO:0019220,GO:0019222,GO:0019362,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019899,GO:0019902,GO:0019903,GO:0019904,GO:0019941,GO:0019985,GO:0022411,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030162,GO:0030163,GO:0030177,GO:0030234,GO:0030433,GO:0030554,GO:0030808,GO:0030810,GO:0030970,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031399,GO:0031401,GO:0031593,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032509,GO:0032510,GO:0032527,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0032991,GO:0033036,GO:0033554,GO:0034098,GO:0034214,GO:0034404,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034976,GO:0035639,GO:0035800,GO:0035861,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036435,GO:0036503,GO:0036513,GO:0042175,GO:0042176,GO:0042221,GO:0042287,GO:0042288,GO:0042325,GO:0042327,GO:0042391,GO:0042726,GO:0042728,GO:0042802,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043280,GO:0043281,GO:0043412,GO:0043413,GO:0043457,GO:0043467,GO:0043531,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044389,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045732,GO:0045838,GO:0045862,GO:0045935,GO:0045937,GO:0045981,GO:0046034,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046907,GO:0048193,GO:0048471,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051788,GO:0051881,GO:0052547,GO:0052548,GO:0055086,GO:0060255,GO:0060828,GO:0061134,GO:0061136,GO:0061857,GO:0061919,GO:0062012,GO:0062013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070085,GO:0070647,GO:0070727,GO:0070841,GO:0070842,GO:0070887,GO:0071218,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071712,GO:0071840,GO:0071897,GO:0071985,GO:0072387,GO:0072389,GO:0072521,GO:0072524,GO:0080090,GO:0090085,GO:0090263,GO:0090304,GO:0090734,GO:0097159,GO:0097352,GO:0097367,GO:0098772,GO:0098796,GO:0098827,GO:0140030,GO:1900371,GO:1900373,GO:1900542,GO:1900544,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901800,GO:1902494,GO:1903003,GO:1903004,GO:1903006,GO:1903007,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903513,GO:1903578,GO:1903580,GO:1903715,GO:1903862,GO:1904288,GO:1904949,GO:1905368,GO:1905369,GO:1990381,GO:1990730,GO:2000058,GO:2000060,GO:2000116,GO:2000152,GO:2000158,GO:2001056,GO:2001169,GO:2001171
Exons4
EggNOG free text desc.Belongs to the AAA ATPase family
EggNOG OGsCOG1222@1,KOG0652@2759
Ec32 ortholog descriptionAAA ATPase domain
Ec32 orthologEc-20_000710.1
Cds size393
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842452.8601556-CDS-E_fasciculatus_S2_contig7916:688..7421696842452.8601556-CDS-E_fasciculatus_S2_contig7916:688..742Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7916 689..742 +
1696842452.8785336-CDS-E_fasciculatus_S2_contig7916:1184..13351696842452.8785336-CDS-E_fasciculatus_S2_contig7916:1184..1335Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7916 1185..1335 +
1696842452.8918047-CDS-E_fasciculatus_S2_contig7916:1738..18611696842452.8918047-CDS-E_fasciculatus_S2_contig7916:1738..1861Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7916 1739..1861 +
1696842452.9016447-CDS-E_fasciculatus_S2_contig7916:2166..22311696842452.9016447-CDS-E_fasciculatus_S2_contig7916:2166..2231Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7916 2167..2231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7916.16082.1prot_E_fasciculatus_S2_contig7916.16082.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7916 689..2231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7916.16082.1

>prot_E_fasciculatus_S2_contig7916.16082.1 ID=prot_E_fasciculatus_S2_contig7916.16082.1|Name=mRNA_E_fasciculatus_S2_contig7916.16082.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=131bp
MLELLNQLDGFSSNDKIKVIAATNRPDVLDPALLRSGRLDRKIELPHPSE
EARGRILQIHSRKMNVDKSDVNFEELARSCDDFNGAQLKAVCVEAGMLAL
RREAEQARNNMMEGINVVSAKKKGSLDYYA*
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mRNA from alignment at E_fasciculatus_S2_contig7916:689..2231+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7916.16082.1 ID=mRNA_E_fasciculatus_S2_contig7916.16082.1|Name=mRNA_E_fasciculatus_S2_contig7916.16082.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1543bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7916:689..2231+ (Ectocarpus fasciculatus EfasUO2)
ATGCTTGAACTGCTCAACCAGCTGGACGGCTTCAGCAGCAACGATAAGAT
CAAGGTGCCGTAACTCACAGAAATTTGCTACAGGGTTTCTTTTGGCTCTT
CGACCCCAATCCCTTGTCTAAAAATGTCGTGTGGAGACTGGGGTTCGAAA
GAGCAAACTCTCTCCCATGTGGTGCCTACCTTAGGCTTGTGGGCGTTTTT
TTTTTTAAAGCCTCCATTGCCACATAGACTATATCGCACACGAATGTTGC
AACGCTCTTGACCGTGATCAATCAGATCTAGGTTACTCCTTTTGTTGTGA
TGACTCGATTTTGATATCGAGATCCTGTGTTGTCTTCTCTAGACACACTG
GCCGCTATGCCCATCTCGCCCCGTGCCCACTCTCGATACGGGCACACAAG
GACAGTCAGTCAGTCCAATTGTGAACTGAAGTCGCCCACCACCCAGTGAG
GATTGTGTTCATTTTTTCATGCTTTCTTGGCGTGACACAATGACAGGTGA
TCGCGGCAACCAACAGGCCTGACGTTTTGGATCCCGCGCTGCTGCGATCG
GGACGGCTGGATCGCAAGATCGAGTTGCCTCACCCTTCCGAGGAGGCCAG
GGGGCGCATCCTTCAGATTCACAGCCGGAAGATGAACGTAGACAAGAGTG
AGTGTGATTGGTGCTTTTGACGACAGTTTCGTTCGTTTTATTGTAGCCTG
CCGAGTGCGGGGTTGCTGTCTGTGAAGTGGAGTAGGAGGATTTGTTGCAT
ATCCAGTCTAGTCGACTTACGTGAAAGAGGTCGTGTCTCACAACCGATGT
CTTGTTTTATTGTTGGTTCTGTTGGCCAAGGTGTGTCTTTGACACAAGCC
AACGGGTGTAGTAACTCGAGAAGCTGTGGATACACAATGCTCTTCACAGG
ATCGATGGAAGTTCTGTATGCAGCGGCTCCTAACTCTTGAAGAAGAGGGA
AATAAACCTGGAGCTACTTTCTGAGGCCCGACAGATGAAGTGCAAGTGCA
CGCGTGCTCATAATGACGTCCGTCTGTCTCCCCACCCACCGCTCTACCAG
GCGATGTGAACTTCGAAGAACTGGCGAGGTCTTGCGACGACTTCAACGGG
GCGCAATTGAAGGCGGTTTGCGTGGAGGCGGGCATGCTTGCCCTCAGACG
GGAAGCGGAACAGGCAAGGAATAGTAGGAGCTCTATCCGTTACATGCGTC
AAGATCTCACTTTTTGGGGGGGGGCACGTGGAGGCCGAAGTTGGGTGACC
TGAACGCGTAACCTGTACGTGCAAACACATTTCAAGGGTTTGCTAGAGTC
TGGGATGCGTCGCTTCTCAGAGGCGGGGACAGGGGACACACTATTCGATG
GCGAGAACGGGGTCGGGTGAAGTTCAATCGTTCACGCGCCGGGTAAATGT
TTGTTGCTGACGCGTCCGTTACCTTAACCCGCACCTTGTGTCCTACATCG
TCCGACATGGTCCAGATCAAGCACGAAGACATGATGGAGGGTATCAATGT
CGTGTCCGCCAAGAAGAAGGGATCGCTAGACTACTACGCATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7916:689..2231+

>mRNA_E_fasciculatus_S2_contig7916.16082.1 ID=mRNA_E_fasciculatus_S2_contig7916.16082.1|Name=mRNA_E_fasciculatus_S2_contig7916.16082.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=393bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7916:689..2231+ (Ectocarpus fasciculatus EfasUO2)
ATGCTTGAACTGCTCAACCAGCTGGACGGCTTCAGCAGCAACGATAAGAT
CAAGGTGATCGCGGCAACCAACAGGCCTGACGTTTTGGATCCCGCGCTGC
TGCGATCGGGACGGCTGGATCGCAAGATCGAGTTGCCTCACCCTTCCGAG
GAGGCCAGGGGGCGCATCCTTCAGATTCACAGCCGGAAGATGAACGTAGA
CAAGAGCGATGTGAACTTCGAAGAACTGGCGAGGTCTTGCGACGACTTCA
ACGGGGCGCAATTGAAGGCGGTTTGCGTGGAGGCGGGCATGCTTGCCCTC
AGACGGGAAGCGGAACAGGCAAGGAATAACATGATGGAGGGTATCAATGT
CGTGTCCGCCAAGAAGAAGGGATCGCTAGACTACTACGCATGA
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