mRNA_E_fasciculatus_S2_contig7913.16080.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7913.16080.1
Unique NamemRNA_E_fasciculatus_S2_contig7913.16080.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7913.16080.1 vs.
Match: SAP30_Sin3_bdg (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U0_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 1.690e-79
Identity = 187/217 (86.18%), Postives = 190/217 (87.56%), Query Frame = 1 
Query:    1 MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLTLSRMGSLSVDTADLGGGGSXXXX-RSAMPNAMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHXGNAGGGGHHXXXXXXXXXXXXXXXXXXMXXGMGYDEKPRAEGYSSRGMG 648
            MNGLR+TV PGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEE VMVSFLQKVIVPDRPFEPTIDL L+RMGSLSVDTADLGGG  XXXX RS+MPNAMM        XXXXXXXXXXXXXXXXXXXXXXXXX  X         XXXXXXXXXXXXXXXXXX XX MGYDEKPRAEGYSSRGMG
Sbjct:    1 MNGLRDTVSPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEENVMVSFLQKVIVPDRPFEPTIDLALARMGSLSVDTADLGGGXXXXXXXRSSMPNAMMHDHMDDGMXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXMGYDEKPRAEGYSSRGMG 208
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BLAST of mRNA_E_fasciculatus_S2_contig7913.16080.1 vs.
Match: SGF29 (C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV9_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 3.580e-79
Identity = 196/216 (90.74%), Postives = 198/216 (91.67%), Query Frame = 1 
Query:    1 MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLTLSRMGSLSVDTADLGGGGSXXXX-RSAMPNAMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHXGNAGGGGHHXXXXXXXXXXXXXXXXXXMXXGMGYDEKPRAEGYSSRGM 645
            MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDL LSRMGSLSVDTADLGGGG XXXX R+AMPNA+MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  X         XXXXXXXXXXXXXXXX  M  GMGYDEKPRAEGYSSRGM
Sbjct:    1 MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLALSRMGSLSVDTADLGGGGGXXXXXRNAMPNAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXSAMGGGMGYDEKPRAEGYSSRGM 207
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BLAST of mRNA_E_fasciculatus_S2_contig7913.16080.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFH4_HETAK)

HSP 1 Score: 84.3 bits (207), Expect = 7.760e-17
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:   34 PYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRP-----FEPT 285
            PYFPFHRDE YP+   V+F++L+  TL+ Y   H INVRPD ++ ELA+AAA HF+   +V+E   + SFL K  + D P      EPT
Sbjct:   21 PYFPFHRDEVYPKGTKVDFRKLKASTLELYALKHKINVRPDATREELAIAAALHFKSRETVNEHTAISSFLNKCGINDIPTGLPLLEPT 109
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7913.16080.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
SAP30_Sin3_bdg1.690e-7986.18domain-containing protein (Fragment) n=1 Tax=Ectoc... [more]
SGF293.580e-7990.74C-terminal domain-containing protein n=1 Tax=Ectoc... [more]
Hypothetical7.760e-1748.31protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7913contigE_fasciculatus_S2_contig7913:4391..7114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score260.8
Seed ortholog evalue6.2e-67
Seed eggNOG ortholog2880.D7FGV9
Model size693
KEGG koko:K03246,ko:K11364
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0008150,GO:0008152,GO:0009628,GO:0009651,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051276,GO:0071704,GO:0071840,GO:1901564
Exons3
EggNOG free text desc.methylated histone binding
EggNOG OGsKOG3038@1,KOG3038@2759
Ec32 ortholog descriptionSGF29 tudor-like domain protein
Ec32 orthologEc-11_000840.1
Cds size693
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842452.7162676-CDS-E_fasciculatus_S2_contig7913:4390..44921696842452.7162676-CDS-E_fasciculatus_S2_contig7913:4390..4492Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7913 4391..4492 +
1696842452.7368028-CDS-E_fasciculatus_S2_contig7913:6155..62541696842452.7368028-CDS-E_fasciculatus_S2_contig7913:6155..6254Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7913 6156..6254 +
1696842452.7493281-CDS-E_fasciculatus_S2_contig7913:6622..71141696842452.7493281-CDS-E_fasciculatus_S2_contig7913:6622..7114Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7913 6623..7114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7913.16080.1prot_E_fasciculatus_S2_contig7913.16080.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7913 4391..7114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7913.16080.1

>prot_E_fasciculatus_S2_contig7913.16080.1 ID=prot_E_fasciculatus_S2_contig7913.16080.1|Name=mRNA_E_fasciculatus_S2_contig7913.16080.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=231bp
MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVR
PDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLTL
SRMGSLSVDTADLGGGGSGGGGRSAMPNAMMHDHMNDAMNDDMLDGMGGD
MGGGGGGSGGRGGGVHGGNAGGGGHHGGGGGGGYGRHGGGHASAMGGGMG
YDEKPRAEGYSSRGMGGGGREGGGGGGGGRG
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mRNA from alignment at E_fasciculatus_S2_contig7913:4391..7114+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7913.16080.1 ID=mRNA_E_fasciculatus_S2_contig7913.16080.1|Name=mRNA_E_fasciculatus_S2_contig7913.16080.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2724bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7913:4391..7114+ (Ectocarpus fasciculatus EfasUO2)
ATGAACGGGTTGCGCGAGACGGTCCCCCCAGGGCCGTACTTCCCCTTCCA
CCGAGACGAGACCTACCCCAGGACTCTGTGCGTGAACTTCAAGAGGCTAG
AGGTGAGGAGCAGCGAGCGAGTCCAATTTCAAAAGGGCGCGGAATAAGCG
GTGGGTCTACGCAGCCAGGCTTTGCATCATTTACATCGCCAAACGGCAAC
ATTCGTACAGCAGGAAGCAGCACCCAGCGCTAGTCCCGCGTCTCGCTGGA
TCGGGCGGAGTAGGAGGATCCCGCGCCGTTTGCTCCGCCGCTTGTAGTCA
GCTATGCTCACGGGCAGCGTGCGGCGAACAGACAGAGCCTGTTGTCATTT
TCCGTGTGTGTTGGGTGGATGAAGGACTGCGTGTCGTGTCTCGTCGAGCG
TTTGGTCTCCACATCCACCCCCCGCTGCCGTTAGCGAGTTTGCTCAGACG
CTTGAGCGCTACAGCTGTTGGTGTAACTCACGGCAGCCGTGGCTCTTCGT
CTCTGACAACGCCGCAGTAGTACAAGCGTAGTCGCATGTGCGCTGTATAT
ACTCTAGTCTTATGTGCACGTGTGGCTGCAACTTAAAACTTCATGCGGGT
TGTAACACCTAGCCAGCACTTCGACTGCCTCCCTGAAGTCCAGACGACGT
GCCAGTGGTGGCGGCCTGGTACGTGTCGCAGTGAAGCTGTTAAGCGCCCC
CTACCATGGTTCACACCAAGGCCAAGGATCCACTCCTGTACGTACTACAC
CGCAGCAGTATTCACGTGGAGCGTCGTGGTTGGTCGCTCTCACGTGTATG
TACGTACATCCTTTTGTGTTGGAGGAACTTTTGGAACGCAGGTTCAGGAC
ACACGGAGGCACGGCTCCGCCTGGGTAATAGACTATGTTCGCGTGTGTAA
AACTCACAGGTCGAGTGTGGTCGATTACCCTGTTTAAGCTCTTGTGTCTT
GTCCGTCCTGGGTGTCCCAGTTAGGTACGCCTTGTCACAGCCGTTCCTCC
AGCCGTACATTGCTGACTGCCTGCGTGTGTGTCAAAAAAAAAAATACGTG
TGCAAAATCGAACGTCCGTCGGCGAAAGCAGCAGAAAAATCGCGCGAAAG
TGGACACAGAATTTTCTCTATTTTTTCAAGCGCCAACTTCTTCTCGAGGT
TTCATGTTAAACGTTAAACACTACGAGCCCTCCACATAGAACTCGATGTT
TCGTGTTCGGTATGTGCTTTAGTTCATATGATATGATATGATATGATATG
ATATGCATAGTAGTGTACGTTTCCAAGACGAAACGGTGCGACGTTAACGG
TTGTTTCCGCCGTCCATGTGTGCGGTTCGGGGTGCTGTACTGGCTGCGGA
TATATGCATATAGCACGGCTTCCAGGCGCTTACACAATCCTATTAAATAT
CTAGCCGGGGTGTCGCTCATACATGTAGAGCACCTACCCACCTTGGAGAT
CCTGTAACTACAACGATACGTGCTTGCTACGCTGTTCTGCGTCCCGTACA
ACAGGCGATGCGAAACTTGATTTGGAGAGATGCGGTACAACGTACAACCC
TAAGCCCCCCGTCCGTGCCGTGTTGTCTTCGTTTTTGATGTTATGGATGG
GTGTTGTGCTGCTGAATTTCGTCGCCGCATGTTGATTTTTGATGTATTCC
ATCCAACGAAACGCCTCCTTCCGCCGCTGCCTGCCGTCCCCTGTCCACTC
CCTCGCTGCCTCCGCTTCCATCCACACTACTACTATCGCAACGACGACGA
CGATGACGAACACAGTATCGTACCCTCCAAAAATACTGCAAGCTTCACGG
CATCAACGTCCGCCCGGACTGCTCACAGGCCGAGCTAGCCGTCGCTGCGG
CTAGACATTTTCAGGTACATGTCGTAGACATTTCAAGTACATCTCGTCGA
GCCTCGTCGTCTCTCTTCCTTTGTGCTGCGTGCTATTAATAGGGTGGGTA
AAGCAGTAGGTAATTCGAAAACCCTCTGTGTGGTACATGGGGGCGGGGGG
GTTGCTCTGGGAGGATTTTCCGACTCCGTGCCCCCTTTAGTGTGAAGTTG
TTGATTGTGATGAAAATTGTGTGGTTGGGGTTTCAGTGCCTTTGGGGCCG
CGGTCTGTACTTTTTCATGCTTTTTTGCCAGCATACGGGGAAGGGACTGC
AAATCAACAACCTTACGAGTTTCCACCAATCGAATAATCGCGTTAATCAA
TCCCGGAACCCGCCCGACGCCGAAAACGGCAGGAGGCACCGTCGGTGGAC
GAGGAGGGTGTCATGGTGTCTTTCCTACAGAAGGTCATTGTTCCCGACCG
GCCCTTCGAGCCCACCATCGACCTCACCCTCTCCCGCATGGGAAGCCTTA
GCGTGGACACGGCGGACCTAGGCGGCGGGGGCAGCGGCGGCGGAGGGCGG
AGCGCGATGCCCAACGCCATGATGCACGACCACATGAACGACGCCATGAA
CGACGACATGTTGGACGGCATGGGAGGGGACATGGGAGGCGGCGGCGGCG
GCAGCGGGGGGCGGGGAGGTGGTGTGCACGGCGGCAACGCCGGTGGTGGT
GGCCACCATGGCGGCGGGGGCGGCGGCGGCTACGGCCGTCACGGTGGCGG
GCACGCGTCTGCCATGGGCGGAGGGATGGGTTACGACGAGAAGCCGCGGG
CGGAGGGGTACTCGTCGCGGGGGATGGGGGGGGGGGGCAGGGAGGGCGGC
GGAGGCGGGGGCGGGGGGAGGGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7913:4391..7114+

>mRNA_E_fasciculatus_S2_contig7913.16080.1 ID=mRNA_E_fasciculatus_S2_contig7913.16080.1|Name=mRNA_E_fasciculatus_S2_contig7913.16080.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=693bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7913:4391..7114+ (Ectocarpus fasciculatus EfasUO2)
ATGAACGGGTTGCGCGAGACGGTCCCCCCAGGGCCGTACTTCCCCTTCCA
CCGAGACGAGACCTACCCCAGGACTCTGTGCGTGAACTTCAAGAGGCTAG
AGTATCGTACCCTCCAAAAATACTGCAAGCTTCACGGCATCAACGTCCGC
CCGGACTGCTCACAGGCCGAGCTAGCCGTCGCTGCGGCTAGACATTTTCA
GGAGGCACCGTCGGTGGACGAGGAGGGTGTCATGGTGTCTTTCCTACAGA
AGGTCATTGTTCCCGACCGGCCCTTCGAGCCCACCATCGACCTCACCCTC
TCCCGCATGGGAAGCCTTAGCGTGGACACGGCGGACCTAGGCGGCGGGGG
CAGCGGCGGCGGAGGGCGGAGCGCGATGCCCAACGCCATGATGCACGACC
ACATGAACGACGCCATGAACGACGACATGTTGGACGGCATGGGAGGGGAC
ATGGGAGGCGGCGGCGGCGGCAGCGGGGGGCGGGGAGGTGGTGTGCACGG
CGGCAACGCCGGTGGTGGTGGCCACCATGGCGGCGGGGGCGGCGGCGGCT
ACGGCCGTCACGGTGGCGGGCACGCGTCTGCCATGGGCGGAGGGATGGGT
TACGACGAGAAGCCGCGGGCGGAGGGGTACTCGTCGCGGGGGATGGGGGG
GGGGGGCAGGGAGGGCGGCGGAGGCGGGGGCGGGGGGAGGGGG
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