mRNA_E_fasciculatus_S2_contig7910.16077.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig7910.16077.1
Unique Name	mRNA_E_fasciculatus_S2_contig7910.16077.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig7910.16077.1 vs.
Match: Histone (H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 3.160e-71
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 1

Query:   28 MAKTPSKKSAKAPKKAGDKKRNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 375
            MAKTPSKKSAKAPKKAGDKKR NKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig7910.16077.1 vs.
Match: Histone (H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 200 bits (508), Expect = 3.730e-64
Identity = 103/118 (87.29%), Postives = 113/118 (95.76%), Query Frame = 1

Query:   22 SNMAKTPSKKSAKAPKKAGDKKRNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 375
            S MAKTPSKKSAKAPKKAGDK +  KRTESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   13 STMAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig7910.16077.1 vs.
Match: Histone (H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.160e-62
Identity = 104/117 (88.89%), Postives = 110/117 (94.02%), Query Frame = 1

Query:   28 MAKTPSKKSAKAPKKAGD-KKRNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 375
            MAK PSKK+AKAPKKA D KK+  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig7910.16077.1 vs.
Match: Histone (H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.400e-61
Identity = 101/118 (85.59%), Postives = 111/118 (94.07%), Query Frame = 1

Query:   28 MAKTPSKKSAKAPKKAGDKKRNNK--RTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 375
            MAKTPSKKSAKAPKK G+K +N K  R ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig7910.16077.1 vs.
Match: Histone (H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 196 bits (498), Expect = 5.640e-61
Identity = 105/120 (87.50%), Postives = 111/120 (92.50%), Query Frame = 1

Query:   19 TSNMAKTPSKKSAKAPKKAGD-KKRNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 375
            T  MAK PSKK+AKAPKKA D KK+  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  131 TFTMAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig7910.16077.1 vs.
Match: Histone (H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 191 bits (485), Expect = 6.910e-61
Identity = 99/116 (85.34%), Postives = 110/116 (94.83%), Query Frame = 1

Query:   28 MAKTPSKKSAKAPKKAGDKKRNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 375
            MAKTPSKK+AKAPKKAG K+  NKR E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig7910.16077.1 vs.
Match: Histone (H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 189 bits (480), Expect = 4.260e-60
Identity = 98/116 (84.48%), Postives = 108/116 (93.10%), Query Frame = 1

Query:   28 MAKTPSKKSAKAPKKAGDKKRNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 375
            MAKTPSK+SAKAPKKA    ++ KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig7910.16077.1 vs.
Match: Histone (H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 187 bits (476), Expect = 2.030e-59
Identity = 100/116 (86.21%), Postives = 110/116 (94.83%), Query Frame = 1

Query:   28 MAKTPSKKSAKAPKKAGDKKRNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 375
            MAKTPSKK+A APKKAG K R+ KRTESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGK-RSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig7910.16077.1 vs.
Match: Histone (H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 184 bits (468), Expect = 9.420e-58
Identity = 100/124 (80.65%), Postives = 111/124 (89.52%), Query Frame = 1

Query:   13 HQTSNMAKTPSKKS-AKAPKKAGD--KKRNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 375
            H  S MAKTPSKK+ +KA KK  D  KKR+ KR ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   30 HPISTMAKTPSKKAPSKAAKKPTDGAKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 153

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig7910.16077.1 vs.
Match: Histone (H2B (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5X6_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.170e-57
Identity = 97/112 (86.61%), Postives = 103/112 (91.96%), Query Frame = 1

Query:   28 MAKTPSKKSAKAPKKAGDKKRNNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTK 363
            MAKTPSKKSA  PKKA   KRN KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTK
Sbjct:    6 MAKTPSKKSA-VPKKASTGKRNKKRVESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTK 116

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig7910.16077.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig7910.16077.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Histone	3.160e-71	99.14	H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECT...	[more]
Histone	3.730e-64	87.29	H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A...	[more]
Histone	1.160e-62	88.89	H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A...	[more]
Histone	1.400e-61	85.59	H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A48...	[more]
Histone	5.640e-61	87.50	H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A...	[more]
Histone	6.910e-61	85.34	H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID...	[more]
Histone	4.260e-60	84.48	H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FW...	[more]
Histone	2.030e-59	86.21	H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0...	[more]
Histone	9.420e-58	80.65	H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID...	[more]
Histone	1.170e-57	86.61	H2B (Fragment) n=1 Tax=Attheya septentrionalis Tax...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig7910	contig	E_fasciculatus_S2_contig7910:1616..1993 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	218.0
Seed ortholog evalue	2.3e-54
Seed eggNOG ortholog	2880.D7FWI8
Model size	378
KEGG ko	ko:K11252
KEGG Pathway	ko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting category	other localisation
GOs	GO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Exons	1
EggNOG free text desc.	protein heterodimerization activity
EggNOG OGs	KOG1744@1,KOG1744@2759
Cds size	351
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036,ko04147

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842452.59888-UTR-E_fasciculatus_S2_contig7910:1615..1642	1696842452.59888-UTR-E_fasciculatus_S2_contig7910:1615..1642	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig7910 1616..1642 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842452.6136231-CDS-E_fasciculatus_S2_contig7910:1642..1993	1696842452.6136231-CDS-E_fasciculatus_S2_contig7910:1642..1993	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig7910 1643..1993 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig7910.16077.1	prot_E_fasciculatus_S2_contig7910.16077.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig7910 1643..1993 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig7910:1616..1993+
coding sequence from alignment at E_fasciculatus_S2_contig7910:1616..1993+

protein sequence of mRNA_E_fasciculatus_S2_contig7910.16077.1

>prot_E_fasciculatus_S2_contig7910.16077.1 ID=prot_E_fasciculatus_S2_contig7910.16077.1|Name=mRNA_E_fasciculatus_S2_contig7910.16077.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=117bp
MAKTPSKKSAKAPKKAGDKKRNNKRTESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*

mRNA from alignment at E_fasciculatus_S2_contig7910:1616..1993+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig7910.16077.1 ID=mRNA_E_fasciculatus_S2_contig7910.16077.1|Name=mRNA_E_fasciculatus_S2_contig7910.16077.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=378bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7910:1616..1993+ (Ectocarpus fasciculatus EfasUO2)
TCCTTCCGAAAACACCAAACCAGCAACATGGCCAAGACCCCCTCCAAGAA
GTCCGCCAAGGCGCCCAAGAAGGCCGGCGACAAGAAGAGGAACAACAAGA
GGACCGAGTCGTACTCCTCGTACATCTACAAGGTGCTCAAGCAGGTCCAC
CCCGACACCGGTATCTCCAAGCGCGGCATGTCCATCATGAACTCGTTCAT
CAACGACGTGTTCGAGCGCGTGGCCGGCGAGTCCGGCAAGCTCACCCGCT
ACAACAAGAAGGCGACCCTCTCCTCCCGCGAGGTCCAGACCGCCGTGCGC
CTCATGCTCCCGGGAGAGCTCGCCAAGCACGCCGTGTCCGAGGGCACCAA
GGCCGTCACCAAGTTCACCTCGTCCTAA

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7910:1616..1993+

>mRNA_E_fasciculatus_S2_contig7910.16077.1 ID=mRNA_E_fasciculatus_S2_contig7910.16077.1|Name=mRNA_E_fasciculatus_S2_contig7910.16077.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=351bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7910:1616..1993+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCAAGACCCCCTCCAAGAAGTCCGCCAAGGCGCCCAAGAAGGCCGG
CGACAAGAAGAGGAACAACAAGAGGACCGAGTCGTACTCCTCGTACATCT
ACAAGGTGCTCAAGCAGGTCCACCCCGACACCGGTATCTCCAAGCGCGGC
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTGGCCGG
CGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTCTCCTCCC
GCGAGGTCCAGACCGCCGTGCGCCTCATGCTCCCGGGAGAGCTCGCCAAG
CACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCGTCCTA
A