mRNA_E_fasciculatus_S2_contig79.16064.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig79.16064.1
Unique NamemRNA_E_fasciculatus_S2_contig79.16064.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig79.16064.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIX7_9PHAE)

HSP 1 Score: 577 bits (1487), Expect = 4.140e-197
Identity = 332/376 (88.30%), Postives = 342/376 (90.96%), Query Frame = 3 
Query:  309 MTTVRAVGAKRPRGYVAAAEEPTLPWAGRVPKPAMDADSFVDYGSGFLRKSCDSCVSSKRRCDGQDPCTRCLRRKKPCHYTERKKCGPRSGQKTGNGARRQPASTSPPDCAGSSGADARKQRRQFMEYQQRALRTQQQQRAAVDGLAGAPASAPGSRYPAMAHGRPLPPHAPMLATGELSGETTCVDHTDYSDNGLPP-RVLSRDESGSSWWSLDDQGGAGAAVSGRLSGVPAPIPSSSWPQREHXXXXXXXXXXXXXXXNDFSNDGAGVEHYGQRTGLWGGLRPGSAAGTXXXXXXXXXESWDDESEEGQGRDEEEEVAALLLGLGKTTNEDFEGFSDDDEEPAPERPVRPGGVGMFREP-RHLPVSNASQELSV 1430
            MTTVRAVGAKRPRGYVAAAE+PTLPWAGRVPKPAMDADSFVDYGSGFLRKSCDSCVSSKRRCDGQDPCTRCLRRKKPCHYTERKKCGPRSGQKTGNG RRQPA TSPPDCAGSSGADARKQRRQFMEYQQRALRTQQQQ AAV GLA APAS+  SRYPA+AH RPL PHA +L TGELSGETTCVD TD SDNGLPP RVLSRDESGSSWWSLDDQGGAGAAVS RLSGVPA IPSS WPQRE XXXXXXXXXXXXXXX       AGV++YGQRTGLWGGLR       XXXXXXXXXESWDD+SEEGQG++EEE VAALLLGLGKTTNEDFEGFSDDDE+PAPERPVRPGGVGMFREP RHLPVSNASQELSV
Sbjct:    1 MTTVRAVGAKRPRGYVAAAEKPTLPWAGRVPKPAMDADSFVDYGSGFLRKSCDSCVSSKRRCDGQDPCTRCLRRKKPCHYTERKKCGPRSGQKTGNGTRRQPAGTSPPDCAGSSGADARKQRRQFMEYQQRALRTQQQQHAAVGGLARAPASSASSRYPAVAHSRPLAPHASVLTTGELSGETTCVDQTDCSDNGLPPHRVLSRDESGSSWWSLDDQGGAGAAVSARLSGVPALIPSS-WPQREXXXXXXXXXXXXXXXXXXXV---AGVKNYGQRTGLWGGLRSXXXXXXXXXXXXXXXESWDDDSEEGQGQNEEE-VAALLLGLGKTTNEDFEGFSDDDEQPAPERPVRPGGVGMFREPPRHLPVSNASQELSV 371
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig79.16064.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B7_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 6.080e-5
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 3 
Query:  444 GFLRKSCDSCVSSKRRCDGQDPCTRCLRRKKPCHYTERKKCGPRS 578
            G LRKSCD+C SSK +C G  PC RC +R+  C +++R++CGP++
Sbjct:   21 GPLRKSCDTCTSSKTKCQGSIPCDRCKKRRIECKFSKRRRCGPKA 65
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig79.16064.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Zn(2)-C64.140e-19788.30fungal-type domain-containing protein n=2 Tax=Ecto... [more]
Zn(2)-C66.080e-551.11fungal-type domain-containing protein (Fragment) n... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig79contigE_fasciculatus_S2_contig79:45144..49742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2746
Hectar predicted targeting categoryother localisation
Exons3
Cds size1125
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842451.1505067-UTR-E_fasciculatus_S2_contig79:45143..464561696842451.1505067-UTR-E_fasciculatus_S2_contig79:45143..46456Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig79 45144..46456 -
1696842451.207054-UTR-E_fasciculatus_S2_contig79:49434..497421696842451.207054-UTR-E_fasciculatus_S2_contig79:49434..49742Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig79 49435..49742 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842451.1634316-CDS-E_fasciculatus_S2_contig79:46456..473481696842451.1634316-CDS-E_fasciculatus_S2_contig79:46456..47348Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig79 46457..47348 -
1696842451.1763878-CDS-E_fasciculatus_S2_contig79:48473..485451696842451.1763878-CDS-E_fasciculatus_S2_contig79:48473..48545Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig79 48474..48545 -
1696842451.1934335-CDS-E_fasciculatus_S2_contig79:49273..494341696842451.1934335-CDS-E_fasciculatus_S2_contig79:49273..49434Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig79 49274..49434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig79.16064.1prot_E_fasciculatus_S2_contig79.16064.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig79 46457..49434 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig79.16064.1

>prot_E_fasciculatus_S2_contig79.16064.1 ID=prot_E_fasciculatus_S2_contig79.16064.1|Name=mRNA_E_fasciculatus_S2_contig79.16064.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=375bp
MTTVRAVGAKRPRGYVAAAEEPTLPWAGRVPKPAMDADSFVDYGSGFLRK
SCDSCVSSKRRCDGQDPCTRCLRRKKPCHYTERKKCGPRSGQKTGNGARR
QPASTSPPDCAGSSGADARKQRRQFMEYQQRALRTQQQQRAAVDGLAGAP
ASAPGSRYPAMAHGRPLPPHAPMLATGELSGETTCVDHTDYSDNGLPPRV
LSRDESGSSWWSLDDQGGAGAAVSGRLSGVPAPIPSSSWPQREHHQQHHH
QEQQHQGGNNDFSNDGAGVEHYGQRTGLWGGLRPGSAAGTGSGSGGSTGE
SWDDESEEGQGRDEEEEVAALLLGLGKTTNEDFEGFSDDDEEPAPERPVR
PGGVGMFREPRHLPVSNASQELSV*
back to top

mRNA from alignment at E_fasciculatus_S2_contig79:45144..49742-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig79.16064.1 ID=mRNA_E_fasciculatus_S2_contig79.16064.1|Name=mRNA_E_fasciculatus_S2_contig79.16064.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4599bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig79:45144..49742- (Ectocarpus fasciculatus EfasUO2)
GCCTCTCTAAAACCTATCCTGCTCCCCCCGCTTGAGATCGACCACGTTTT
CATTCGCAACCACCATCGCCAGGTCACCGCCGCCGTCAGCTCCGCAGGCC
AGGATAAACCAGGGAGGCTGGCAGATCCACCCAAGCACAACTGTCCTAGA
GCCCTGAGCGTGCGCTGCGTGTGCTGGGCCGACCTCCCTAGTTTGCCAGA
GGCCTCGAAACGGAAGAGAGCTTTCGTCAACGAACGAGCGACGACCGACC
TGGCAGCTAGGCGCGCGAAAATTCAAGGCCCTGAAACCTTCAACCTCGAC
ACAACCAAATGACGACGGTGCGCGCTGTGGGAGCCAAGCGACCTCGGGGC
TACGTTGCTGCAGCTGAAGAACCAACGCTGCCATGGGCTGGAAGGGTGCC
GAAGCCTGCCATGGACGCCGATAGTTTTGTCGACTACGGGAGCGGATTCT
TGAGGAAGTCGTGTGACAGGTGGGTGGCTTGGTAGGAGGGACGTTAGAGA
AAGACGCGGAAAAGCGAGAGGAGAGAGAGATAAGAGAGAGCGAGGATTCA
CGGCTGATGAGGCCAATGGGTGTGCGCCTTCTGGGCGCCAGCCTGGGCGT
GTGCAGCTGCCATGACCTCGGCAAGGCTTTGTCTCAGTCAGCGGCTGCAC
CACGCGCGTGATTTTGGGGACGTGTTGAAGGAGAGCGGAGTTTTTGTGTT
TGGGCGCGGAGAGAAATCGAGTTTGTGTGTGCGTATTTGCGCTCGCATCG
TTTGTCTGTGTTTTTGTGCCCCATCATGGCTGCTGCCGTTGCACGGGATG
GTGCCAGCTAGCCTTGCGATGATGCCACCACCATTGCTGGCTGTTTCTGC
GTGGAGAGAGAAAGAGACCGAGGAGAGACCGAAGCAACAGCAGCTTTAGA
AGGATTATTTCGAGGCAAAATTCAAACGTCCACGCACACACAGCAGCAGC
CTTCACCGCCCAGTTCGTGGTCTCAAAACGGTATATACACACATGCGCGC
GATGCAGCTTGGATGCACCCACCCACACGTCATACCTGGTGCATCCCGCA
CCTTGGCTCCACGTCCCCACCGCTACGCGTTTTCCCCACCACATGCACTG
CACAAAGCGAAAAGCTATCCACTCTATCCGCACTCATCCGCCCAACCTTT
TTTTTTTTTGCACGTGTGGTTTTCCCCCCTCTTCAACCTCCCGGTAGCTG
TGTCAGCAGCAAGCGGCGGTGCGATGGTCAAGACCCCTGCACGCGTTGCC
TGCGAAGGAAGAAGCCATGGTGAGCGAAGCACCGCCAGTCTGGTTGAAGT
CATGATTGCCACGGCCATCTCTGACCACGCAGGACCACAGAGTAGCGTAA
GGTCACCACAATTCCACGGCAGGGGCGTGCGTGGCGAAATTCCGCAAATC
TTCATGTTGATTGCTTTGAGTGCAACACCGAATGTGAGGCTCACAACTCT
CCGCACCTTTTTGGCGCCTAACCTACAAAGCAAAGGCGGTGTGTGTCCCA
TCATATAGTATAGGTACGTTACGTATGTTCCCTGTGTGCAGTCACGGGAT
TGATTTGACTCATCTGGTCTCGGTTGCCAGTATGTGCGGGGTGAGGGCGT
ACATCTGTGTTGCTGGCCACTCTTTTCAGTTGTACTCCCTGTCGAGTTTT
TCCGCTCACCCAAAAGCTGAAATACTGCTGTGAAGTATAAAAGACACACC
TTTTTTGAGCGTCAAGAGGGTTTTGGCGAGCCCCACAGCATTACTTCCAG
CTGTATTCGCTCGCAAGATCGGCGAGCAAATAGACAGAGAGAGGTTTGAA
TATATTAATTAGCCCAGGAACGCGTCTCTTGTATCCATCAAACAAATCCG
GCCACAGAACGTTCGGCTTATTTTCGCTCGTTCTGTCCCACACCCTACAC
CTTATTTTTCCGCGTGAAATGGGAATGGATCCCACCGAACAGACACGATA
CGTGAACCTCCTGGTTTTGAACCCAACCCTTTCATATCGCATCATGCATC
ATGCCGAACACACCGATGATGACATATGTTCAATCCAATGACGTATTGTA
TGCATATTATTGCAACTGCCCAGCTCATCTATTTTGTACGATGTCGCCCC
TCGCATAATGCCGAACATCATTCGATGTACACCAAGTAGCCGACCTCGAC
ATGCCCTGGCCAAACCTCACGAGATCGCTTGATGCCAATGGCAAGAATGG
CACGCCCCGCTCTTGTCATTCCAAGCTCTGTAGGCTGCTTGAGACCTGGC
GACATATCTATATATCCCCGAGTCCATCCAATATGTGGCGTCACCGCACA
ACCTACGGCTGTATCAACTGCTACCCGCCCCAGGGACTCAGAAGTTTACA
AGTCTCCCCTGCCTTTGTTTTTTCCGCCGAACCGTTTGAAACAGCCACTA
CACCGAGAGGAAGAAATGCGGCCCACGAAGCGGCCAGAAAACAGGGAATG
GCGCGAGACGGCAGCCTGCGAGCACCTCTCCCCCTGACTGCGCGGGTTCA
TCGGGCGCAGACGCTCGTAAGCAGAGGCGACAGTTCATGGAGTATCAACA
ACGCGCCCTCCGGACACAACAGCAGCAGCGCGCGGCTGTTGATGGATTGG
CTGGAGCGCCTGCTTCAGCTCCCGGCAGCCGGTACCCTGCGATGGCCCAT
GGTCGCCCCCTGCCGCCGCATGCCCCGATGCTCGCTACCGGCGAGCTGAG
CGGAGAGACGACGTGCGTAGACCACACAGACTACTCTGACAATGGGCTGC
CCCCCCGAGTGCTGTCACGAGACGAATCAGGCAGCAGCTGGTGGTCCCTC
GATGACCAAGGCGGAGCGGGGGCGGCCGTATCGGGGCGCTTGAGCGGCGT
CCCTGCGCCTATACCCAGCTCGTCGTGGCCTCAGCGCGAGCACCACCAGC
AACACCACCACCAGGAGCAGCAACACCAAGGCGGCAACAACGACTTCTCG
AATGATGGTGCTGGTGTTGAGCACTACGGCCAGAGGACGGGGCTCTGGGG
CGGGCTGCGCCCTGGCAGCGCTGCGGGCACCGGGTCCGGTAGCGGAGGCA
GCACCGGCGAATCTTGGGACGACGAGTCTGAGGAGGGCCAGGGTCGGGAT
GAAGAAGAAGAGGTGGCGGCGCTGTTGCTCGGCCTCGGCAAGACCACGAA
CGAGGATTTCGAGGGATTCTCGGACGACGACGAGGAACCGGCGCCCGAAA
GACCGGTTCGCCCCGGGGGCGTGGGCATGTTTCGCGAACCCCGCCACCTG
CCGGTGTCCAACGCCTCTCAAGAACTGAGTGTCTGAAAAGGCGGTCTGTA
GCTTGCGTTGATTTATCTCTCTGTTACACCTCTCTGTTGTGGGAAGTTAG
GCAGCGGTGGGTATAGACTTACCGCGGCTGCACGGCTTTCGCCTCCAAGA
GAAGAGGCCATTGATATACTTCATACATTTGCAGGTTGGGTCACAATAAG
AATGCCTCTTCCTCTGCGTGCAGCTTTCTCTAGAATTGCTCGCTGAATTT
CGTTTTACACGTATTGTTCAGAGGAATGTTTGCGCTCGAGCATAGATTTG
CGCGCTCGTGGCAGTTCTTTACAAAGCTCAACATAGATTGCGCGAGAGGT
GGACAGGACAGGTAGCTGTATAGTCGTAGATCGATCTGGGCTGTTTAGTC
GAGTACCATCGTACCAAACAGTAGACGGCGACGACGCGGGTGCCCTGCCT
ACAAGTAGTTTAAACCCCAAAAGCCGGGGCGATAGATCGAAGCCGTAAGG
TGTCTGTTTAGGAGTACCTCCGTGTGCTGTTGGGCGGTATTGCTCTTGTC
GATGTTTTGGTTGTTCGATGTTGCGCGCGGTTTCCAGCGTACGTCTTTTT
GTTGGCCTCGTAGAACTGGTCGCCGGAGTCTTGAGAAAGTCCCGACGACG
AGTGCCTCACAGCAACTTGCGGCTAATGGAAATGTGTTTTTTCGTGCTTG
CGAAGATGGTGAAACACCGCCCATGTTGGTAAGCTTGTTTTATCTTATTG
GTCGTAGTCTTGTGCTTTCGCGGGGGTTCTCTTTGGGTATACTCTCAATT
ACTCTGTCGTGATTGTCCTGCATTTATTTTTAGTGCATATAGTACGTAGT
AGGCCCGCTATTTTGTCGCGTGGGGAGCCTTTTTTTGACTCCCCCGTTTT
TCTTGTTTTCTCCACGCATACGGCGGAACGCCGATTTGATGTTCTCTGGG
CCGGTCCCGGATGACCCACAAGTATTGGGAGTAGATGAAGCTGTTGCCAG
ATGATTTTATGGTGCGAGGTAAAGATATGTACTTGTATGGGACAAAATAT
GACACGTTCGATTGTGTGGCATTTCACCTGTGACCTAGACGAAGGGCGGT
AAGTAGGCTCAAGCTTTCACACGTGTGCGTGTGAGACACAGGTTGATGAC
AGGCAGAAGTCTCACGCAACTCGACATGAATCGTCGTGCAGCCATTGTCA
ACCCAACCGCTGAGTAAACATACAAATCGATATTGCTACAGAGAGCTGTT
GAGGCATCATGTATATCATGACCACCGAAATATCAATTTGGGGCGCTACC
GCTCATCCCCGACGCATGGACAGCAGTGAGTGAAGTATAATAGCGTGTT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig79:45144..49742-

>mRNA_E_fasciculatus_S2_contig79.16064.1 ID=mRNA_E_fasciculatus_S2_contig79.16064.1|Name=mRNA_E_fasciculatus_S2_contig79.16064.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1125bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig79:45144..49742- (Ectocarpus fasciculatus EfasUO2)
ATGACGACGGTGCGCGCTGTGGGAGCCAAGCGACCTCGGGGCTACGTTGC
TGCAGCTGAAGAACCAACGCTGCCATGGGCTGGAAGGGTGCCGAAGCCTG
CCATGGACGCCGATAGTTTTGTCGACTACGGGAGCGGATTCTTGAGGAAG
TCGTGTGACAGCTGTGTCAGCAGCAAGCGGCGGTGCGATGGTCAAGACCC
CTGCACGCGTTGCCTGCGAAGGAAGAAGCCATGCCACTACACCGAGAGGA
AGAAATGCGGCCCACGAAGCGGCCAGAAAACAGGGAATGGCGCGAGACGG
CAGCCTGCGAGCACCTCTCCCCCTGACTGCGCGGGTTCATCGGGCGCAGA
CGCTCGTAAGCAGAGGCGACAGTTCATGGAGTATCAACAACGCGCCCTCC
GGACACAACAGCAGCAGCGCGCGGCTGTTGATGGATTGGCTGGAGCGCCT
GCTTCAGCTCCCGGCAGCCGGTACCCTGCGATGGCCCATGGTCGCCCCCT
GCCGCCGCATGCCCCGATGCTCGCTACCGGCGAGCTGAGCGGAGAGACGA
CGTGCGTAGACCACACAGACTACTCTGACAATGGGCTGCCCCCCCGAGTG
CTGTCACGAGACGAATCAGGCAGCAGCTGGTGGTCCCTCGATGACCAAGG
CGGAGCGGGGGCGGCCGTATCGGGGCGCTTGAGCGGCGTCCCTGCGCCTA
TACCCAGCTCGTCGTGGCCTCAGCGCGAGCACCACCAGCAACACCACCAC
CAGGAGCAGCAACACCAAGGCGGCAACAACGACTTCTCGAATGATGGTGC
TGGTGTTGAGCACTACGGCCAGAGGACGGGGCTCTGGGGCGGGCTGCGCC
CTGGCAGCGCTGCGGGCACCGGGTCCGGTAGCGGAGGCAGCACCGGCGAA
TCTTGGGACGACGAGTCTGAGGAGGGCCAGGGTCGGGATGAAGAAGAAGA
GGTGGCGGCGCTGTTGCTCGGCCTCGGCAAGACCACGAACGAGGATTTCG
AGGGATTCTCGGACGACGACGAGGAACCGGCGCCCGAAAGACCGGTTCGC
CCCGGGGGCGTGGGCATGTTTCGCGAACCCCGCCACCTGCCGGTGTCCAA
CGCCTCTCAAGAACTGAGTGTCTGA
back to top