mRNA_E_fasciculatus_S2_contig79.16061.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig79.16061.1
Unique NamemRNA_E_fasciculatus_S2_contig79.16061.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig79.16061.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRX6_ECTSI)

HSP 1 Score: 596 bits (1537), Expect = 2.510e-214
Identity = 293/316 (92.72%), Postives = 301/316 (95.25%), Query Frame = 1 
Query:    1 RNPLLEQMKPMPPATFVKGTSLVAREATFDPLRGAFVILARPNDPELNLPEPRRGLGAMGLCKDPGQVKAVLSEAEGRPPFKLPKMHKRKPPPGTRLTNDLGTVMQMNELTANDKAVLWSNYERAMERSLQKEGDLESVTWRHRATHEPAPPWVHHRWPTQPITRAPPPYGTEDVPESLSPGAVLRSGRRACKSFNQDQGERLLTWKEMKGDRIDPPPPRKLPPSYEAD-AHMDAMMDDERSMRLDVPMQKQRRHVPGHAGEISGAICPIGDRERRELRALEMHEFTVPKKPTPPPPAVTGRTPYRRPSQHQIDRQ 945
            RNPLLEQMKPMPPATFVKG SLVAREATFDPLRGAFV+LARPN PE+NLPEPRRGLGA+GL KDPG VK VLS AEGR PFKLPKMHKR+PPPGTRLTNDLGTVMQMNELTAN+KAVLWSNY+RAMERSLQKEGDLESV+WRHRATHEPAPPWVHHRWPT+PI RAPPPYGTEDVPESLSP AVLRSGRRACKSFNQDQGERLLTWKEMKGDR DPPPPRKLPPSYEAD AHMDAMMDDERSMRLDVPM KQRRHV GHAGEISGAI PIGDRERRELRALEMHEFTVPKKPTPPPP VTGRTPYRRPSQHQIDRQ
Sbjct:   32 RNPLLEQMKPMPPATFVKGASLVAREATFDPLRGAFVLLARPNAPEVNLPEPRRGLGAIGLYKDPGLVKDVLSAAEGRQPFKLPKMHKRRPPPGTRLTNDLGTVMQMNELTANEKAVLWSNYQRAMERSLQKEGDLESVSWRHRATHEPAPPWVHHRWPTKPIARAPPPYGTEDVPESLSPAAVLRSGRRACKSFNQDQGERLLTWKEMKGDRTDPPPPRKLPPSYEADDAHMDAMMDDERSMRLDVPMHKQRRHVSGHAGEISGAISPIGDRERRELRALEMHEFTVPKKPTPPPPTVTGRTPYRRPSQHQIDRQ 347
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BLAST of mRNA_E_fasciculatus_S2_contig79.16061.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV0_9PHAE)

HSP 1 Score: 548 bits (1412), Expect = 7.130e-196
Identity = 271/306 (88.56%), Postives = 278/306 (90.85%), Query Frame = 1 
Query:   22 MKPMPPATFVKGTSLVAREATFDPLRGAFVILARPNDPELNLPEPRRGLGAMGLCKDPGQVKAVLSEAEGRPPFKLPKMHKRKPPPGTRLTNDLGTVMQMNELTANDKAVLWSNYERAMERSLQKEGDLESVTWRHRATHEPAPPWVHHRWPTQPITRAPPPYGTEDVPESLSPGAVLRSGRRACKSFNQDQGERLLTWKEMKGDRIDPPPPRKLPPSYEAD-AHMDAMMDDERSMRLDVPMQKQRRHVPGHAGEISGAICPIGDRERRELRALEMHEFTVPKKPTPPPPAVTGRTPYRRPSQHQI 936
            MKPMPPATFVKG SLVAR+ATFDPLRGAFV+LARPNDPELNLPE RRGLGAMGL KD G VK VLSEAEGR PFKLPK+HKR+PPPG RLTNDLGTVMQMNELTAN+KA LWSNYERAMER LQKEGDLESVTWRHR THEPAPPW HHRWPT+ I RAPPPYGTEDVPESLSP AVLRSGRRACKSFNQDQGERLLTWKEMKGDR+DPPP RKLPPSYEAD AHMDAMMDDERSMRL VPM KQRRHVPG  GEISGAI PIGDRERRELRALE HEFTVPKKPTPPPPA T RTPY RPS H I
Sbjct:    1 MKPMPPATFVKGASLVARQATFDPLRGAFVVLARPNDPELNLPERRRGLGAMGLFKDNGLVKDVLSEAEGRQPFKLPKVHKRRPPPGIRLTNDLGTVMQMNELTANEKAALWSNYERAMERFLQKEGDLESVTWRHRVTHEPAPPWFHHRWPTKQIARAPPPYGTEDVPESLSPAAVLRSGRRACKSFNQDQGERLLTWKEMKGDRVDPPPQRKLPPSYEADDAHMDAMMDDERSMRLAVPMHKQRRHVPGQVGEISGAIRPIGDRERRELRALETHEFTVPKKPTPPPPAATARTPYLRPSHHSI 306
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig79.16061.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.510e-21492.72protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.130e-19688.56protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig79contigE_fasciculatus_S2_contig79:31712..33587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size945
Hectar predicted targeting categoryother localisation
Exons4
Cds size924
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842450.8097003-UTR-E_fasciculatus_S2_contig79:31711..317321696842450.8097003-UTR-E_fasciculatus_S2_contig79:31711..31732Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig79 31712..31732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842450.8230922-CDS-E_fasciculatus_S2_contig79:31732..319271696842450.8230922-CDS-E_fasciculatus_S2_contig79:31732..31927Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig79 31733..31927 +
1696842450.8330255-CDS-E_fasciculatus_S2_contig79:32202..323641696842450.8330255-CDS-E_fasciculatus_S2_contig79:32202..32364Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig79 32203..32364 +
1696842450.8432062-CDS-E_fasciculatus_S2_contig79:32586..328711696842450.8432062-CDS-E_fasciculatus_S2_contig79:32586..32871Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig79 32587..32871 +
1696842450.853999-CDS-E_fasciculatus_S2_contig79:33305..335871696842450.853999-CDS-E_fasciculatus_S2_contig79:33305..33587Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig79 33306..33587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig79.16061.1prot_E_fasciculatus_S2_contig79.16061.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig79 31733..33587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig79.16061.1

>prot_E_fasciculatus_S2_contig79.16061.1 ID=prot_E_fasciculatus_S2_contig79.16061.1|Name=mRNA_E_fasciculatus_S2_contig79.16061.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=308bp
MKPMPPATFVKGTSLVAREATFDPLRGAFVILARPNDPELNLPEPRRGLG
AMGLCKDPGQVKAVLSEAEGRPPFKLPKMHKRKPPPGTRLTNDLGTVMQM
NELTANDKAVLWSNYERAMERSLQKEGDLESVTWRHRATHEPAPPWVHHR
WPTQPITRAPPPYGTEDVPESLSPGAVLRSGRRACKSFNQDQGERLLTWK
EMKGDRIDPPPPRKLPPSYEADAHMDAMMDDERSMRLDVPMQKQRRHVPG
HAGEISGAICPIGDRERRELRALEMHEFTVPKKPTPPPPAVTGRTPYRRP
SQHQIDRQ
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mRNA from alignment at E_fasciculatus_S2_contig79:31712..33587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig79.16061.1 ID=mRNA_E_fasciculatus_S2_contig79.16061.1|Name=mRNA_E_fasciculatus_S2_contig79.16061.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1876bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig79:31712..33587+ (Ectocarpus fasciculatus EfasUO2)
CGTAACCCTCTCCTAGAGCAGATGAAACCCATGCCTCCGGCGACGTTTGT
GAAAGGAACCTCTCTGGTAGCGAGAGAAGCAACGTTCGACCCTCTCAGGG
GGGCGTTCGTTATCCTCGCTAGGCCAAATGATCCCGAACTGAATCTGCCA
GAACCGAGGAGAGGACTGGGAGCCATGGGTCTATGCAAGGATCCCGGCCA
GGTCAAGGCCGTGTTGGTGAGATGGGGAGGGCGTGACGGGAGAAGGATGT
ATGCTTGGTATCGTCATGCGTTAATGGAGGAGCAGTCGGACTGCACGATC
GACGTACAGTAAGGATAGGGGATGTAAGAAGAAGCGGTTTACATTTTTTG
TGCACTTTGTCCCTCCCGCCGTGGGGTTGTTTCCTTATCGAAAACAGCAA
TAATACCGACTTTGCAATGAGTGTTTTTCCGAAATACTCGATGAACTCCA
GCTCCCCCGCCCGGTCCATGCCGCTGCCTACGTCTTTTCAGTCTGAGGCA
GAGGGAAGGCCGCCTTTCAAGCTACCGAAGATGCATAAGCGAAAACCTCC
ACCGGGGACTCGCTTGACGAATGACCTTGGCACGGTGATGCAGATGAACG
AACTCACAGCGAACGACAAGGCCGTTCTTTGGAGCAACTACGAAAGGGCC
ATGGTGAGAGCGGTTCTGATTGTGAGCGAAACCAAGGGACTATGGTGACA
AGCAACACACCGTTTCCTTGCTGCTTTGAAGGATACCGCACTTACTTGAA
CTTGGTGCAGCCAATCTCTATCTTGCCGTCACCAGCTTCCTCTCATCTCT
CCGACTTGAGTTGTTAAGGTTCGTGAACGCTCTTGCTTGTTTGCCCTTCT
TCTCCTGGAACCCTGCATCCATCAGGAACGGTCCCTGCAGAAAGAAGGAG
ACCTAGAAAGTGTCACATGGCGGCATCGCGCGACTCACGAGCCAGCCCCC
CCATGGGTCCACCACCGATGGCCCACGCAGCCCATCACTCGCGCACCGCC
GCCCTACGGCACCGAGGACGTCCCTGAAAGCTTGTCGCCCGGTGCGGTTC
TTCGGAGCGGCCGGCGAGCGTGCAAAAGTTTCAACCAGGATCAAGGGGAG
CGTCTGCTGACGTGGAAGGAGATGAAGGGAGATAGGATTGACCCACCGCC
CCCGCGGAAGGTGGGGACACGGTGTCTGGTGTTGGCTTGGGTCCCCCTTT
CGTCTACGAACGAATGTTGATTTGTATTTTTCTCACTGTTTCATGCATCA
GAGAGCTCAGGAATAGTCCCATCCATTAGATGGAGATACCTTGTGGTCGG
ATTGGCATGTGCCCATGAATTTCGCCTGATAACCGGCCCCGCGGCCAAAC
AGCACAGCTCGATCATCTACAACAGCACGTACACGCTCTGGCCCCCCTGG
GCTCGTAAACCTTTGTGGCTGCAAAGACCTAACAGCTTGTCATACCGGGA
TTGATCTATCCTACGGCGGGCTAGGCAAGCCATCTGTTTGTTGTATTCTT
CATCACCACAGCAGTCCAGCGACGACTGCCTTCTCTCTCCCCTCCGCCAC
CAATCGATCCCCATCCGACCCTGAACTTCGGTTCGTTGACGCAGCTGCCC
CCCTCATACGAGGCCGATGCACACATGGACGCGATGATGGACGACGAGCG
GTCAATGCGGCTCGACGTGCCGATGCAAAAGCAGCGCCGCCATGTTCCGG
GGCACGCGGGCGAAATTTCAGGGGCCATCTGTCCTATCGGCGATCGCGAA
AGGAGAGAACTGCGCGCCCTTGAGATGCACGAGTTCACGGTTCCGAAGAA
ACCGACCCCACCCCCTCCGGCTGTGACCGGCAGGACGCCGTACCGACGGC
CTAGCCAACACCAGATCGATCGCCAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig79:31712..33587+

>mRNA_E_fasciculatus_S2_contig79.16061.1 ID=mRNA_E_fasciculatus_S2_contig79.16061.1|Name=mRNA_E_fasciculatus_S2_contig79.16061.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=924bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig79:31712..33587+ (Ectocarpus fasciculatus EfasUO2)
ATGAAACCCATGCCTCCGGCGACGTTTGTGAAAGGAACCTCTCTGGTAGC
GAGAGAAGCAACGTTCGACCCTCTCAGGGGGGCGTTCGTTATCCTCGCTA
GGCCAAATGATCCCGAACTGAATCTGCCAGAACCGAGGAGAGGACTGGGA
GCCATGGGTCTATGCAAGGATCCCGGCCAGGTCAAGGCCGTGTTGTCTGA
GGCAGAGGGAAGGCCGCCTTTCAAGCTACCGAAGATGCATAAGCGAAAAC
CTCCACCGGGGACTCGCTTGACGAATGACCTTGGCACGGTGATGCAGATG
AACGAACTCACAGCGAACGACAAGGCCGTTCTTTGGAGCAACTACGAAAG
GGCCATGGAACGGTCCCTGCAGAAAGAAGGAGACCTAGAAAGTGTCACAT
GGCGGCATCGCGCGACTCACGAGCCAGCCCCCCCATGGGTCCACCACCGA
TGGCCCACGCAGCCCATCACTCGCGCACCGCCGCCCTACGGCACCGAGGA
CGTCCCTGAAAGCTTGTCGCCCGGTGCGGTTCTTCGGAGCGGCCGGCGAG
CGTGCAAAAGTTTCAACCAGGATCAAGGGGAGCGTCTGCTGACGTGGAAG
GAGATGAAGGGAGATAGGATTGACCCACCGCCCCCGCGGAAGCTGCCCCC
CTCATACGAGGCCGATGCACACATGGACGCGATGATGGACGACGAGCGGT
CAATGCGGCTCGACGTGCCGATGCAAAAGCAGCGCCGCCATGTTCCGGGG
CACGCGGGCGAAATTTCAGGGGCCATCTGTCCTATCGGCGATCGCGAAAG
GAGAGAACTGCGCGCCCTTGAGATGCACGAGTTCACGGTTCCGAAGAAAC
CGACCCCACCCCCTCCGGCTGTGACCGGCAGGACGCCGTACCGACGGCCT
AGCCAACACCAGATCGATCGCCAG
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