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Homology
BLAST of mRNA_E_fasciculatus_S2_contig79.16058.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG0_ECTSI) HSP 1 Score: 412 bits (1059), Expect = 2.170e-142 Identity = 248/303 (81.85%), Postives = 250/303 (82.51%), Query Frame = 3
Query: 84 MLAKHKIKWAIMNAGEEMPSPRATKRFETTSLAGTEYVASRRGEVPDRGTMIRELEQRKLRNTQASVAFGSAKILYESDAMSRQKDILGAPPRGEDEKRNKELKQALTRTHFTFGEEPMVYERTSTLPDPTGHLEDYTGVLNTXXXXXXXXXXXXXXXXXXXXRTMATDQMDLQMPQGEDRGVQLEKNRQLKVALTRTHFKFGEEEMDYTTDHQMGFQYDPEKVKLVGNRGLAKEVXXXXXXXXXXXXXXXXXXXXXAMRTQRASGGMVATAEERQAQIDKNRALKKQLQTTHYEIGTDDDYM 992
MLAKHKIKWAIMNAGEEMPSPRATKRFETTSLAGTEYVASRRGEVPDRGTMIRELEQRKLRNTQASVAFGSAKILYESDAMSRQKDILGAPPRGEDEKRNKELKQALTRTHFTFGEEPMVYERTSTLPDPTGHL+DYTGVLNTXXXXXXXXXXXXXXXXXXXXRTMATDQMDLQ+PQGEDRGVQLEKNRQLKV KL GNRGLAKEV AMRTQRASGGMVATAEERQAQIDKNRALKKQLQTTHYEIGTDDDYM
Sbjct: 1 MLAKHKIKWAIMNAGEEMPSPRATKRFETTSLAGTEYVASRRGEVPDRGTMIRELEQRKLRNTQASVAFGSAKILYESDAMSRQKDILGAPPRGEDEKRNKELKQALTRTHFTFGEEPMVYERTSTLPDPTGHLDDYTGVLNTXXXXXXXXXXXXXXXXXXXXRTMATDQMDLQVPQGEDRGVQLEKNRQLKV-------------------------------KLAGNRGLAKEVKADLSRTHFTLGNHKFDWQTDAMRTQRASGGMVATAEERQAQIDKNRALKKQLQTTHYEIGTDDDYM 272
BLAST of mRNA_E_fasciculatus_S2_contig79.16058.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW84_9STRA) HSP 1 Score: 134 bits (337), Expect = 2.530e-33 Identity = 101/301 (33.55%), Postives = 135/301 (44.85%), Query Frame = 3
Query: 234 MIRELEQRKLRNTQASVAFGSAKILYESDAMSR-------------------QKDILGAPPRGEDEKRNKELKQALTRTHFTFGEEPMVYERTSTLPDPTGHLEDYTGVLNTXXXXXXXXXXXXXXXXXXXX---RTMATDQMDLQMP-------------------------QGEDRGVQLEKNRQLKVALTRTHFKFGEEEMDYTTDHQMGFQYDPEKVKLVGNRGLAKEVXXXXXXXXXXXXXXXXXXXXXAMRTQR-ASGGMVATAEERQAQIDKNRALKKQLQTTHYEIGTDDDYM 992
M EL +RKL NT+ S+A GSA +YE+DA + QKDIL + G D + N+ LK LTRT F+ G+E + Y+R S LPDPTG L ++TGVLN + + L++P D L+ NR LKVALTRT+ FG+E +Y +D++ GF+YD ++VK G L+KEV A R R A + EE Q + NR LK+ LQ T+Y IGTD DYM
Sbjct: 1 MASELHRRKLNNTRTSIALGSAPTVYETDAQGQLPAPMYATLHCGRYESQAHQKDILSSHSAGADREHNRLLKAQLTRTTFSLGDERVDYQRVSALPDPTGRLHEFTGVLNAEVKEMMKRSNMYFGEPGGNFAKGHVLRNPALLLRLPLPGNAAPSYDTAAHEGMQAVGASGVAAADMQATLQHNRDLKVALTRTNLNFGDEVPEYVSDYKRGFKYDADEVKSAGRACLSKEVKDDLRRSHFKFGTDPVVWETDARRNMRQAEQAEHSGPEEVARQREHNRLLKQSLQRTNYAIGTDADYM 301
BLAST of mRNA_E_fasciculatus_S2_contig79.16058.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FEP3_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 3.960e-14 Identity = 50/98 (51.02%), Postives = 58/98 (59.18%), Query Frame = 3
Query: 135 MPSPRATKRFETTSLAGTEYVASRRGEVPDRGTMIRELEQRKLRNTQASVAFGSAKILYESDAMSRQKDILGAPPRGEDEKRNKELKQALTRTHFTFG 428
MPS KRF TT + E VA RR EV +R M L RKL NTQ S+ FGS ++YESDAM RQKDILG G D K KELK L +++ G
Sbjct: 1 MPS----KRFTTTLNSSLEAVAKRRDEVENRQQMSASLRGRKLANTQTSIVFGSDSVVYESDAMRRQKDILGNKSAGADAKACKELKLGLQKSNIAIG 94
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1008 |
| Hectar predicted targeting category | other localisation |
| Exons | 8 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-16_003910.1 |
| Cds size | 912 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842450.4420645-UTR-E_fasciculatus_S2_contig79:14520..14533 | 1696842450.4420645-UTR-E_fasciculatus_S2_contig79:14520..14533 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig79 14521..14533 - |
| 1696842450.5466204-UTR-E_fasciculatus_S2_contig79:19450..19533 | 1696842450.5466204-UTR-E_fasciculatus_S2_contig79:19450..19533 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig79 19451..19533 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842450.4527898-CDS-E_fasciculatus_S2_contig79:14533..14659 | 1696842450.4527898-CDS-E_fasciculatus_S2_contig79:14533..14659 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig79 14534..14659 - |
| 1696842450.4617288-CDS-E_fasciculatus_S2_contig79:15460..15577 | 1696842450.4617288-CDS-E_fasciculatus_S2_contig79:15460..15577 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig79 15461..15577 - |
| 1696842450.4707959-CDS-E_fasciculatus_S2_contig79:16113..16206 | 1696842450.4707959-CDS-E_fasciculatus_S2_contig79:16113..16206 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig79 16114..16206 - |
| 1696842450.4864025-CDS-E_fasciculatus_S2_contig79:16429..16573 | 1696842450.4864025-CDS-E_fasciculatus_S2_contig79:16429..16573 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig79 16430..16573 - |
| 1696842450.4950316-CDS-E_fasciculatus_S2_contig79:17101..17314 | 1696842450.4950316-CDS-E_fasciculatus_S2_contig79:17101..17314 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig79 17102..17314 - |
| 1696842450.503586-CDS-E_fasciculatus_S2_contig79:18069..18156 | 1696842450.503586-CDS-E_fasciculatus_S2_contig79:18069..18156 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig79 18070..18156 - |
| 1696842450.5121343-CDS-E_fasciculatus_S2_contig79:18731..18845 | 1696842450.5121343-CDS-E_fasciculatus_S2_contig79:18731..18845 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig79 18732..18845 - |
| 1696842450.5205615-CDS-E_fasciculatus_S2_contig79:19432..19450 | 1696842450.5205615-CDS-E_fasciculatus_S2_contig79:19432..19450 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig79 19433..19450 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig79.16058.1 >prot_E_fasciculatus_S2_contig79.16058.1 ID=prot_E_fasciculatus_S2_contig79.16058.1|Name=mRNA_E_fasciculatus_S2_contig79.16058.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=304bp
MLAKHKIKWAIMNAGEEMPSPRATKRFETTSLAGTEYVASRRGEVPDRGT MIRELEQRKLRNTQASVAFGSAKILYESDAMSRQKDILGAPPRGEDEKRN KELKQALTRTHFTFGEEPMVYERTSTLPDPTGHLEDYTGVLNTEVKNMIK STNLSFGNAPTVYRTMATDQMDLQMPQGEDRGVQLEKNRQLKVALTRTHF KFGEEEMDYTTDHQMGFQYDPEKVKLVGNRGLAKEVKADLSRTHFTLGNH KFDWQTDAMRTQRASGGMVATAEERQAQIDKNRALKKQLQTTHYEIGTDD DYM* back to topmRNA from alignment at E_fasciculatus_S2_contig79:14521..19533- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig79.16058.1 ID=mRNA_E_fasciculatus_S2_contig79.16058.1|Name=mRNA_E_fasciculatus_S2_contig79.16058.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5013bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig79:14521..19533- (Ectocarpus fasciculatus EfasUO2) GGCGTTGTTCACTGTGGGACCGACAGCGGCGCTTTACCAAGGAATCGAGG
CCATCACAGCGCGGCTCAGCTACCTCTTGCAAAATGTTGGCAAAGCACAA
GGTGAGTGGTTGTAGGGACGTGCTCGCAGCAGCTGGGCGTGGCAACGGTT
ACTGTCAGCACTCGCAGTGCCGGACACACCGCGTCGGGACAACCCGGTCC
CGAGAGCTAGGGGCGGCGAGGCACATAAAGAAGCGGACAACGTTTCGTTG
TCGCTGACTTCACTCCGAGTGAAATAACCCCTGATGTATAGGCATACACG
CCAGTCACTCGTTGGTTGTAGAGCTACTGTATGTACAGGTACACGTAAAA
ATGTAGACTATGCTGCTTATAACTGTGTAAATACATTAGTCAAGTCAACA
CACGCATATCAAACAGCAGCTCTACAACCCTTAGTCTACAGGGTTAACGT
TCCTCTCGATCAGTGTTCGGATGGTCATTGTGATTTGCTGCGCATACCAG
CCCTAAAGACAGCTGAGTTCGACCTACATGCCTTGCTGCTGTGGGCACAT
ATAGTCTGGACTATACTGCTGTAGTGTAAAGCATTTCGTAGAGACTGCTG
TGAGCCACCGAATTGGTTTACAAGTCTCCTGTTGTTTCTATGAACTTCAA
AAGCCATCTGGTGCCTCGAACCCGTCCAAACACACAAGATAAAATGGGCA
ATCATGAACGCGGGCGAGGAAATGCCTTCCCCACGGGCAACAAAACGGTT
CGAGACCACATCGCTCGCAGGAACGGAGTACGTCGCGTCCCGCCGAGGGG
AGGTACGAGCTAAATTTATGAATTTGATAGGGAGGGATGATCGTGTTCGC
GTTTATTGTAGCGTCCCAACCTATGCGTACCATAAACTATAGGTAGGTGC
TCGGCGTGTCCATTGCTTATCAGAAACTTTGGTTGTTGGGTGAGGCCGAA
GTACGGGATGTACAGCGATCCACACGGTACGCAAAAGACTCCTTCTCTGT
CAAATTTCTCGTTCATGGGGATGCTACTGTTAATCATCGTTGAGTGCATC
ACGTTCTTCTGTCAAAACGAGCTCCATGGCACACGATATCTACAGGTACC
AGTACATCCTAAGGATCAGGACCGAGAAATCCCACATACTGCTGTACCAT
GTATTCAAACCTAAGCGTAGGGTCCACAATCGCTTGATTTACTGCATTCT
ACCGATGAGACATGGAACAAATGTTTCACTCGATTGTTGCTCTCACCCAC
GGAACCGTGTTTAGTACATGGGCGTTGTGGCCTTTGCCTACAACTTCAAG
ACAAGCTAACGTGCTCGGCACACTCTTTTGTGTGCAGATACCGTAATTGT
AAATACACCATGAAACTTGATATCCAGGTACCAGACCGAGGTACGATGAT
AAGGGAGTTGGAGCAGCGAAAGCTTCGCAACACCCAGGCTTCTGTGGCTT
TCGGATCGGCAAAGGTAGGTAAATGTGTGATGGCCCTACAATCATGGTTG
TGTCGGTGTGGAAGTTAACGGAAGTGCTCTATGGACCATGAATATCGCCT
CTTCGTTCGACTGTGAAGAGATATGCGTACATCAGACACACGCCTACATC
TATGTGTTGTGTTATGCACGAATACCTCGCAAGAAGCTTTGGGGCAACTA
ACAGTCGGCTACACTCTGGATTGTACGCAGACGAGGTCTCCTGTCGTTCT
GTTATCGGTTCACTCAGAAGACCGTGAACGAATGAAGGCATAGCTTCGAA
CGCGGTAGGTCGCCGACGTATTGGTACCAAGCGATGGTTGGCATGTCATC
TCCGCGAGGCGAATGCTTGAAACAGATGGGGAGTCATAGGTCCTTCTTCT
CACACGATCCAGGTTCTCGGCGTATCCGTGGGATTGCCGAGACGACGATC
ACACCACCCAAACCTTTACATATACACACAATGGAGGATCATACTGACTT
CGTTTGCATAAGCGGTTGTAGCAATCCCGCCCGGCGTTCATGCGACTCAA
TGATGTCTCGTGCACGGGACGTGTCTAGACTCCAAACAATGGATGCGCTC
CGTCGCGGTTTTCAGGGTTGCAAAGGGGATACGGCGTTGATGGACACCCT
CGGGTGATGTGGATGGATGGTGAGCTCTACTCCCCCCCTCCCGTCGCCCT
TTGCTAGTGTTCCAAACCTGCTATTGCTATGTCACCACCCCCCCCCTGCC
CCCAACAAACACGTACAAGATATTGTACGAAAGCGATGCCATGAGCCGAC
AAAAAGACATTCTGGGGGCCCCGCCGAGAGGCGAAGACGAGAAGCGCAAC
AAGGAGCTCAAGCAAGCATTAACCAGAACACACTTCACCTTTGGGGAAGA
ACCAATGGTGTACGAGCGAACAAGTACGCTACCGGACCCTACAGGGCACC
TAGAGGACTACACGGGGGTTCTCAACACTGAGGTGTGTGTATGTGCTGCA
ACTGTGCTGCAACCGTAGGAGGAGTTGGTCACTTATGTCTCGGTCATCAA
CGCCTTGTCGTGTCGTGTATCTTGGTTCTCAAACAGGTGTTACAGTAGTA
TCCACTTAATCAGAAGCATGGAACTTGGAACGGGTGGCAACGGCAAACGT
CTATATTCTACAAATTGTTGCGGCGTTTTCCAACTTTCAGAATATAATAA
TCGTCCCCGTAAAACAAACAGAAGTGACTTCAGGGGGTGCAGGGTCGGAG
GGCTTTCCCGACGACAGCCCTAGTCAGGTTGATATTTCGCGAGAAGAGAA
ATCCGAAGGTTGCTTCGCATAACACATGGTTCCGTACTTATCGTCCCCCT
TGTCAGTGCCTGAGTGCCGCGAGGTACAATTGGATGCGGCTTGAGCGGGT
AATCATCTCAAAGCAGAAGATCTTGTCGGCCGCTCAATCTATGTACCATG
TCCATACCCCCTTTGCTCTACTTCTCTCCTCGCTCAACTTACATCTTCGT
CTCTTAACAGGTGAAAAATATGATCAAGAGCACAAACCTATCGTTTGGCA
ACGCCCCGACGGTGTACAGGACGATGGCCACCGACCAGATGGACCTGCAG
ATGCCCCAGGGGGAAGACAGGGGGGTCCAGCTCGAAAAGAACCGTCAACT
AAAGGTGAACGAGTAGCCTTTTATAGGAGGATTCGTTCGTTTGTTTCCCA
GGGCCAACCGGCCGTAGTTCTGGCTGGGTACGAGCTATTGCTAATTACTG
TGTTCATTATTTCCAATTATTTTGAGGGTACTGTACGACAAGAACCCACA
AAGGGTGCGAACGGTTCTTGGCGAAAATATTGCCAACCTTTTCCGGGTGG
CTTCTCCGCTTCAACTGAAACACTCAGGTGGCCCTCACTCGAACACATTT
TAAGTTTGGCGAGGAAGAGATGGACTACACCACGGATCACCAGATGGGGT
TCCAATACGACCCAGAAAAGGTATTTACGTCATACCGGGATGCCAGCCGC
GCTGATGTTCCAGGCCTGTTCCTGCCGTTGTCATAGAGCTGATGACTTGG
CTGATGAAGAGGACGAGGGTTTCGTGGTTCGTAGTTGTATTGCCTCGCCT
CTTGTAGCTGTAACACTAGGAGAGCTACTACGTAGCTACAATGAAGTTAG
GTGTCCTTGCGTACGTTGATGTATAGCAGTTCAACAACAATCAAATTATT
CACATGTAGCGGCAAATCTCGACGAAAAGACGAAGAGTATCAGCCGCAGA
CTTGTCATCAAGGGTGTTTTGGTAAAGCTACTGCACACACCAACAAGCGG
TTTACGTGTCTGGGCTCGGCGTGGTGTTGTTCCGGCCTTTGCTCAAGGTT
GCGCTCGTCCTCACCTACCTGGACCTCTACTCCACACACTGCACACGTTT
TTTGGTCCATGTTTAGTTGCCGAACCAGTATGTCATTCGTTGTCTTTGAT
CACGTGTTAAGGAGCGCACACTCAGAGGAGATCAACCAATGCGTCGTACT
TGCCAGGTAAAATTAGTGGGAAACAGGGGACTTGCCAAGGAGGTCAAGGC
AGACCTATCGCGGACTCATTTCACCCTGGGGAATCACAAATTTGATTGGC
AAACGGACGCAATGAGGACACAAGTGAGTTTCTTTTCATCTATGCCATTC
TCTTCTGTGGTCATCTTTACCCACCTTTACTGATACCCATCGACCCTAGG
GAAAGCGATGACATCAGTCTGGAGCCACCTATTCTATAGAAGCTCTTCAC
CGGATGTTCAGTCCCCAAATATACCCTCAGTTGTACCGGCTGCGCTGATC
TTGCGCCTGGACTTCATGCCTGAGCACATGCTCACGTTCGTCGGAGTTAT
TCATGGTGATTTCCCTCCTCTCACTCATTGCAAACCACGTATGTATCGTT
TCTCCTCCAACCGTTGTTGCTTATTGCCATTCTTCGGGGTCACGGGTAGT
TTGAACCTAGCTGAAAACACTTAGAGTTGTGAAACGGTCCGTTTCTCCGG
GAATGATTTGCCACCGATATCATCTAAGTAGATTAATTGGCCAGTCCTCA
AAATTGCGGGGGTCTAATTGTTTTTTATACTCGGTCGGCCATCTCTTGGG
GTGTACGTGCGACTTTGTCCAACATCGTTTTGTGGTAAAGGCTGAGCACC
TGTTAGACGAGGAACTGTATCGACATGTTCCCAAGCCCCTCAGGGCAGGG
TATTCGTTCAAATGGCATCCCATCTGTGAACGATTGATGGCGCGTGTTGT
TGCCGCGGTATTTGTCTCTGAAATGCAGGGACCTAGGTGGGGTTAGTGAA
GGCTTGTCGCTCCAAACTAACCTTCCTCCTCGTCCTTATGTCCCACCCCC
GGGTCCCGACTCTGCCACCGCCGGATCCCCCTCCTCATGGATCATGCACA
TTTGGACTGAAACACGCCACTCAGCGAGCTTCCGGCGGCATGGTAGCAAC
AGCGGAGGAGCGACAGGCGCAGATTGATAAAAACAGAGCGCTCAAGAAAC
AGCTGCAGACGACTCACTACGAGATCGGCACAGATGATGACTACATGTAG
GAAATAGATAAGA back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig79:14521..19533- >mRNA_E_fasciculatus_S2_contig79.16058.1 ID=mRNA_E_fasciculatus_S2_contig79.16058.1|Name=mRNA_E_fasciculatus_S2_contig79.16058.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=912bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig79:14521..19533- (Ectocarpus fasciculatus EfasUO2) ATGTTGGCAAAGCACAAGATAAAATGGGCAATCATGAACGCGGGCGAGGA AATGCCTTCCCCACGGGCAACAAAACGGTTCGAGACCACATCGCTCGCAG GAACGGAGTACGTCGCGTCCCGCCGAGGGGAGGTACCAGACCGAGGTACG ATGATAAGGGAGTTGGAGCAGCGAAAGCTTCGCAACACCCAGGCTTCTGT GGCTTTCGGATCGGCAAAGATATTGTACGAAAGCGATGCCATGAGCCGAC AAAAAGACATTCTGGGGGCCCCGCCGAGAGGCGAAGACGAGAAGCGCAAC AAGGAGCTCAAGCAAGCATTAACCAGAACACACTTCACCTTTGGGGAAGA ACCAATGGTGTACGAGCGAACAAGTACGCTACCGGACCCTACAGGGCACC TAGAGGACTACACGGGGGTTCTCAACACTGAGGTGAAAAATATGATCAAG AGCACAAACCTATCGTTTGGCAACGCCCCGACGGTGTACAGGACGATGGC CACCGACCAGATGGACCTGCAGATGCCCCAGGGGGAAGACAGGGGGGTCC AGCTCGAAAAGAACCGTCAACTAAAGGTGGCCCTCACTCGAACACATTTT AAGTTTGGCGAGGAAGAGATGGACTACACCACGGATCACCAGATGGGGTT CCAATACGACCCAGAAAAGGTAAAATTAGTGGGAAACAGGGGACTTGCCA AGGAGGTCAAGGCAGACCTATCGCGGACTCATTTCACCCTGGGGAATCAC AAATTTGATTGGCAAACGGACGCAATGAGGACACAACGAGCTTCCGGCGG CATGGTAGCAACAGCGGAGGAGCGACAGGCGCAGATTGATAAAAACAGAG CGCTCAAGAAACAGCTGCAGACGACTCACTACGAGATCGGCACAGATGAT GACTACATGTAG back to top
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