mRNA_E_fasciculatus_S2_contig7892.16052.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7892.16052.1
Unique NamemRNA_E_fasciculatus_S2_contig7892.16052.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7892.16052.1 vs.
Match: Probable (methionone aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIX4_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.870e-13
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:  268 MPVEPGVVSPARLVPDHIPKTPYYATGAVPPQDNN 372
            MPVEPGVVSPARLVPDHI KTPYYATG+VPPQDNN
Sbjct:    1 MPVEPGVVSPARLVPDHILKTPYYATGSVPPQDNN 35
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7892.16052.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Probable5.870e-1394.29methionone aminopeptidase n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7892contigE_fasciculatus_S2_contig7892:5276..5656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score71.6
Seed ortholog evalue2.9e-10
Seed eggNOG ortholog2880.D8LIX4
Preferred nameMAP1D
Model size381
KEGG rclassRC00105
KEGG koko:K00029,ko:K01265
KEGG ReactionR00216
KEGG Pathwayko00620,ko00710,ko01100,ko01120,ko01200,map00620,map00710,map01100,map01120,map01200
KEGG ModuleM00169,M00172
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009737,GO:0009987,GO:0010033,GO:0019538,GO:0031365,GO:0033993,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0071704,GO:0097305,GO:1901564,GO:1901700
Exons1
EggNOG free text desc.metalloexopeptidase activity
EggNOG OGsCOG0024@1,KOG2738@2759
Ec32 ortholog descriptionPeptidase M24, structural domain
Ec32 orthologEc-20_001925.1
EC1.1.1.40,3.4.11.18
Cds size381
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842449.7543535-CDS-E_fasciculatus_S2_contig7892:5275..56561696842449.7543535-CDS-E_fasciculatus_S2_contig7892:5275..5656Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7892 5276..5656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7892.16052.1prot_E_fasciculatus_S2_contig7892.16052.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7892 5276..5656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7892.16052.1

>prot_E_fasciculatus_S2_contig7892.16052.1 ID=prot_E_fasciculatus_S2_contig7892.16052.1|Name=mRNA_E_fasciculatus_S2_contig7892.16052.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=127bp
MRHTGSCRGCVRSIVSAAFGNSSKPGRHGLMQTQRGVTNSPPTRRGLFAA
PATTTTAGWDRARATQFQIPCRSNSGGGSSSPFPANAKRMPVEPGVVSPA
RLVPDHIPKTPYYATGAVPPQDNNVSR
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mRNA from alignment at E_fasciculatus_S2_contig7892:5276..5656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7892.16052.1 ID=mRNA_E_fasciculatus_S2_contig7892.16052.1|Name=mRNA_E_fasciculatus_S2_contig7892.16052.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=381bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7892:5276..5656+ (Ectocarpus fasciculatus EfasUO2)
ATGAGACATACAGGGAGCTGCCGCGGTTGTGTGCGTTCGATTGTCTCAGC
AGCCTTCGGTAACAGCAGTAAGCCGGGGAGGCATGGACTCATGCAAACGC
AACGCGGCGTAACTAACTCTCCTCCGACCAGGAGAGGGTTGTTCGCTGCC
CCTGCCACCACGACAACAGCTGGCTGGGATAGAGCTAGGGCGACGCAGTT
TCAAATACCCTGCCGCAGCAATAGCGGTGGCGGTAGCAGCAGCCCCTTCC
CAGCCAACGCGAAACGGATGCCGGTGGAGCCAGGAGTGGTCAGCCCTGCC
AGACTAGTGCCAGATCACATCCCCAAGACGCCCTACTACGCGACGGGCGC
GGTCCCTCCTCAGGACAACAACGTAAGTCGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7892:5276..5656+

>mRNA_E_fasciculatus_S2_contig7892.16052.1 ID=mRNA_E_fasciculatus_S2_contig7892.16052.1|Name=mRNA_E_fasciculatus_S2_contig7892.16052.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=381bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7892:5276..5656+ (Ectocarpus fasciculatus EfasUO2)
ATGAGACATACAGGGAGCTGCCGCGGTTGTGTGCGTTCGATTGTCTCAGC
AGCCTTCGGTAACAGCAGTAAGCCGGGGAGGCATGGACTCATGCAAACGC
AACGCGGCGTAACTAACTCTCCTCCGACCAGGAGAGGGTTGTTCGCTGCC
CCTGCCACCACGACAACAGCTGGCTGGGATAGAGCTAGGGCGACGCAGTT
TCAAATACCCTGCCGCAGCAATAGCGGTGGCGGTAGCAGCAGCCCCTTCC
CAGCCAACGCGAAACGGATGCCGGTGGAGCCAGGAGTGGTCAGCCCTGCC
AGACTAGTGCCAGATCACATCCCCAAGACGCCCTACTACGCGACGGGCGC
GGTCCCTCCTCAGGACAACAACGTAAGTCGA
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