mRNA_E_fasciculatus_S2_contig7874.16037.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7874.16037.1
Unique NamemRNA_E_fasciculatus_S2_contig7874.16037.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7874.16037.1 vs.
Match: Histone (acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY4_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.170e-21
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:   43 LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 246
            LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXX VCAPVR
Sbjct:  900 LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXXVCAPVR 967
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BLAST of mRNA_E_fasciculatus_S2_contig7874.16037.1 vs.
Match: Histone (acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT9_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 9.070e-20
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:   43 LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCP 159
            LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCP
Sbjct:  107 LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCP 145
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BLAST of mRNA_E_fasciculatus_S2_contig7874.16037.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG10_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.050e-19
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    7 AALRQQQQRLLLLRHASKCPAE---GEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 246
            A LRQQQQRLLLLRHASKCP +   G+QC VTPHC +MK+LWKHIAECK+Q+C +XXXXXXXXXXXXXXXXXXXXX+VCAPVR
Sbjct:  392 ALLRQQQQRLLLLRHASKCPFDSESGQQCTVTPHCASMKKLWKHIAECKDQRCQVXXXXXXXXXXXXXXXXXXXXXSVCAPVR 474
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BLAST of mRNA_E_fasciculatus_S2_contig7874.16037.1 vs.
Match: Histone (acetyltransferase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3SN67_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.780e-18
Identity = 64/81 (79.01%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:    4 QAALRQQQQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 246
            Q  LR QQQRLLLLRHA+KCP +  QC VTPHC  MKRLWKHIAECK+Q+C +XXXXXXXXXXXXXXXXXXXXX VC PVR
Sbjct:   65 QQVLRHQQQRLLLLRHAAKCPHQDNQCPVTPHCAGMKRLWKHIAECKDQKCMVXXXXXXXXXXXXXXXXXXXXXPVCGPVR 145
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BLAST of mRNA_E_fasciculatus_S2_contig7874.16037.1 vs.
Match: Histone (acetyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBX0_THAPS)

HSP 1 Score: 80.5 bits (197), Expect = 2.810e-18
Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:   25 QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 246
            QQRLLLLRHA+KCP +  QC VTPHC  MKRLWKHIAECK+Q+C  XXXXXXXXXXXXXXXXXXXXX VC PVR
Sbjct:    1 QQRLLLLRHAAKCPHQDNQCPVTPHCAGMKRLWKHIAECKDQKCVXXXXXXXXXXXXXXXXXXXXXXPVCGPVR 74
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BLAST of mRNA_E_fasciculatus_S2_contig7874.16037.1 vs.
Match: Histone (acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3F1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.990e-18
Identity = 57/74 (77.03%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:   25 QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 246
            QQRLLLLRHASKCPAE  +C VTPHC  MK+LW+HIA CK Q C +XXXXXXXXXXXXXXXXX    AVCAPVR
Sbjct:    1 QQRLLLLRHASKCPAEANKCPVTPHCANMKKLWQHIALCKVQTCNVXXXXXXXXXXXXXXXXXDHKCAVCAPVR 74
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BLAST of mRNA_E_fasciculatus_S2_contig7874.16037.1 vs.
Match: Histone (acetyltransferase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVC1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.170e-18
Identity = 64/81 (79.01%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:    4 QAALRQQQQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 246
            Q  LR QQQRLLLLRHA+KCP E  +C VTPHC  MKRLWKHIAECK+Q+C +XXXXXXXXXXXXXXXXXXXXX VC PVR
Sbjct:  192 QQVLRHQQQRLLLLRHAAKCPHENGKCPVTPHCAGMKRLWKHIAECKDQKCQVXXXXXXXXXXXXXXXXXXXXXPVCMPVR 272
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7874.16037.1 vs.
Match: Histone (acetyltransferase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WAS7_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 9.120e-18
Identity = 64/81 (79.01%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:    4 QAALRQQQQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 246
            Q  LR QQQRLLLLRHA+KCP E  +C VTPHC  MKRLWKHIAECK+Q+C +XXXXXXXXXXXXXXXXXXXXX VC PVR
Sbjct:  262 QQVLRHQQQRLLLLRHAAKCPHEDGRCPVTPHCAGMKRLWKHIAECKDQKCLVXXXXXXXXXXXXXXXXXXXXXPVCGPVR 342
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7874.16037.1 vs.
Match: Histone (acetyltransferase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKV4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 9.580e-18
Identity = 64/81 (79.01%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:    4 QAALRQQQQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 246
            Q  LR QQQRLLLLRHA+KCP E  +C VTPHC  MKRLWKHIAECK+Q+C +XXXXXXXXXXXXXXXXXXXXX VC PVR
Sbjct:  388 QQVLRHQQQRLLLLRHAAKCPHEDGRCPVTPHCAGMKRLWKHIAECKDQKCLVXXXXXXXXXXXXXXXXXXXXXPVCGPVR 468
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7874.16037.1 vs.
Match: Histone (acetyltransferase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2ST16_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 9.690e-18
Identity = 64/81 (79.01%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:    4 QAALRQQQQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCPIXXXXXXXXXXXXXXXXXXXXXAVCAPVR 246
            Q  LRQ   RLLLLRHASKCP E  +C VTPHC  MKRLWKHIAECK+QQC + XXXXXXXXXXXXXXXXXXXXAVC PVR
Sbjct:  221 QQVLRQXXXRLLLLRHASKCPHENGKCPVTPHCAGMKRLWKHIAECKDQQCQMAXXXXXXXXXXXXXXXXXXXXAVCGPVR 301
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7874.16037.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Histone1.170e-2198.53acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
Histone9.070e-20100.00acetyltransferase n=1 Tax=Ectocarpus siliculosus T... [more]
Hypothetical2.050e-1980.72protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Histone2.780e-1879.01acetyltransferase (Fragment) n=1 Tax=Skeletonema m... [more]
Histone2.810e-1881.08acetyltransferase (Fragment) n=1 Tax=Thalassiosira... [more]
Histone3.990e-1877.03acetyltransferase (Fragment) n=1 Tax=Tribonema min... [more]
Histone5.170e-1879.01acetyltransferase (Fragment) n=1 Tax=Triparma paci... [more]
Histone9.120e-1879.01acetyltransferase (Fragment) n=1 Tax=Ditylum brigh... [more]
Histone9.580e-1879.01acetyltransferase (Fragment) n=1 Tax=Attheya septe... [more]
Histone9.690e-1879.01acetyltransferase n=1 Tax=Pelagomonas calceolata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7874contigE_fasciculatus_S2_contig7874:5613..6056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score92.4
Seed ortholog evalue1e-16
Seed eggNOG ortholog2880.D8LPT9
Model size246
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1778@2759
EC2.3.1.48
Cds size246
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842448.1105754-CDS-E_fasciculatus_S2_contig7874:5612..56991696842448.1105754-CDS-E_fasciculatus_S2_contig7874:5612..5699Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7874 5613..5699 -
1696842448.1249712-CDS-E_fasciculatus_S2_contig7874:5897..60561696842448.1249712-CDS-E_fasciculatus_S2_contig7874:5897..6056Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7874 5898..6056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7874.16037.1prot_E_fasciculatus_S2_contig7874.16037.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7874 5613..6056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7874.16037.1

>prot_E_fasciculatus_S2_contig7874.16037.1 ID=prot_E_fasciculatus_S2_contig7874.16037.1|Name=mRNA_E_fasciculatus_S2_contig7874.16037.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=82bp
MQAALRQQQQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQ
QCPIPHCVSSRFVLSHYHRCKDLKCAVCAPVR
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mRNA from alignment at E_fasciculatus_S2_contig7874:5613..6056-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7874.16037.1 ID=mRNA_E_fasciculatus_S2_contig7874.16037.1|Name=mRNA_E_fasciculatus_S2_contig7874.16037.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=444bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7874:5613..6056- (Ectocarpus fasciculatus EfasUO2)
ATGCAGGCCGCCCTCCGGCAGCAGCAGCAGCGGCTGTTGCTGCTGCGACA
CGCGAGCAAGTGTCCCGCGGAGGGGGAGCAATGCAAGGTTACGCCGCACT
GCCAGGCGATGAAGCGCTTGTGGAAGCACATCGCCGAGTGCAAGAACCAG
CAATGCCCGGTAAGTTTTTTCCTTTTTTTGTTTTGTTGTCTCCTTGTAAA
CGTGTACATTTTGAGTGCGGGCAAGGTTTATTTTGGGTGGCGGTGGTTGT
TGTTGCGACGTTGTCGTGAGTCGTTTGCAACACACGCATCCCCCCGACTG
CTGCTGCTGCTGCTGCTGCTACTGCTGCTGCTACTGCTACTACTACTGTT
GCCGCAGATTCCACACTGCGTGTCGTCTCGCTTCGTGCTGAGCCACTACC
ATCGGTGTAAGGACCTCAAGTGTGCCGTGTGCGCTCCCGTGCGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7874:5613..6056-

>mRNA_E_fasciculatus_S2_contig7874.16037.1 ID=mRNA_E_fasciculatus_S2_contig7874.16037.1|Name=mRNA_E_fasciculatus_S2_contig7874.16037.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=246bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7874:5613..6056- (Ectocarpus fasciculatus EfasUO2)
ATGCAGGCCGCCCTCCGGCAGCAGCAGCAGCGGCTGTTGCTGCTGCGACA
CGCGAGCAAGTGTCCCGCGGAGGGGGAGCAATGCAAGGTTACGCCGCACT
GCCAGGCGATGAAGCGCTTGTGGAAGCACATCGCCGAGTGCAAGAACCAG
CAATGCCCGATTCCACACTGCGTGTCGTCTCGCTTCGTGCTGAGCCACTA
CCATCGGTGTAAGGACCTCAAGTGTGCCGTGTGCGCTCCCGTGCGC
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