mRNA_E_fasciculatus_S2_contig7872.16035.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7872.16035.1
Unique NamemRNA_E_fasciculatus_S2_contig7872.16035.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7872.16035.1 vs.
Match: Structure-specific (endonuclease subunit SLX4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H1_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 2.460e-75
Identity = 225/374 (60.16%), Postives = 234/374 (62.57%), Query Frame = 3 
Query:    3 ATSPCSRGRSQHRGLGSPAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGHDAELREVMPSFGQMTLQELAGMMAVYGLKKKSKREMTERLEHIWKTLHPASAAAEGGMPAAGDGTXXXXXXXXXXXXXXX--DAPTRDSDSGGDPSSCLPASSQGRRRGRAAIEARPTFSPAATAAATSSASIPRRPPLSRPPRGGNGSRGTGFSQEEAVPPLPSTSRXXXXXXXXX---------GFLADNSSGGKGGDADLEERIRGVIMGYAPLHEDILLLKTVDLSAIHTLIKNAGGVKCTKKDLASYLDARGITFVDRGGVKRRARGXXXXXXXXXEXXXXXXXXXXXXXXXPGATGAVAAGQRSGLYITRGGAICR 1091
            ATSP  RGRSQHRGL SPA                              N   AELREVMPSFGQMTLQELAGMMAVYGLKKKSKREMTERLEHIWKTLHPA  AAE GM AAGDG  XXXXXXXXXXXXXX  DAP+RDS  GGDPS+ L ASSQG RR R A EARPT S                                                XXXXXXXXX         GFLA+NSSG  G DADL ERIR VIMGYAPLHEDILLLKTVDLSAIHTLIKNAG VKCTKKDLASYLD+RGITF+DRGGVKRRARG        X XXXXXXXXX      PGATG  AAG+   + + R G +CR
Sbjct: 1301 ATSPIGRGRSQHRGLESPATARRRHHCTPSSPPVEGEEGASSPTAVGG-NEDIAELREVMPSFGQMTLQELAGMMAVYGLKKKSKREMTERLEHIWKTLHPA--AAEEGMSAAGDGNAXXXXXXXXXXXXXXXRDAPSRDS--GGDPSAYLSASSQGHRRSRGAAEARPTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFLAENSSGRNGVDADLGERIRSVIMGYAPLHEDILLLKTVDLSAIHTLIKNAG-VKCTKKDLASYLDSRGITFIDRGGVKRRARGGERETEGEXXXXXXXXXXXR-----PGATGT-AAGRNGAVCVARDGTLCR 1662
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BLAST of mRNA_E_fasciculatus_S2_contig7872.16035.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH0_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 2.340e-14
Identity = 80/86 (93.02%), Postives = 80/86 (93.02%), Query Frame = 3 
Query:    3 ATSPCSRGRSQHRGLGSPAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGHDAELREVMPSFGQMTLQELAGMMAVYGLKKKSKR 260
            ATSP  RGRSQHRGL SPAA XXXXXXXXXXXXXXXXXXXXXXXXXXXX G DAELREVMPSFGQMTLQELAGMMAVYGLKKKSKR
Sbjct:  995 ATSPIGRGRSQHRGLESPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDDAELREVMPSFGQMTLQELAGMMAVYGLKKKSKR 1080
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7872.16035.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Structure-specific2.460e-7560.16endonuclease subunit SLX4 n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized2.340e-1493.02protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7872contigE_fasciculatus_S2_contig7872:1678..4939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1679
Hectar predicted targeting categoryother localisation
Exons5
Cds size915
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7872.16035.1prot_E_fasciculatus_S2_contig7872.16035.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7872 1857..4354 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842447.8908076-UTR-E_fasciculatus_S2_contig7872:1677..18561696842447.8908076-UTR-E_fasciculatus_S2_contig7872:1677..1856Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7872 1678..1856 +
1696842447.9509246-UTR-E_fasciculatus_S2_contig7872:4354..49391696842447.9509246-UTR-E_fasciculatus_S2_contig7872:4354..4939Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7872 4355..4939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842447.9028075-CDS-E_fasciculatus_S2_contig7872:1856..19361696842447.9028075-CDS-E_fasciculatus_S2_contig7872:1856..1936Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7872 1857..1936 +
1696842447.9141483-CDS-E_fasciculatus_S2_contig7872:2353..26601696842447.9141483-CDS-E_fasciculatus_S2_contig7872:2353..2660Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7872 2354..2660 +
1696842447.9243395-CDS-E_fasciculatus_S2_contig7872:2858..30521696842447.9243395-CDS-E_fasciculatus_S2_contig7872:2858..3052Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7872 2859..3052 +
1696842447.9332376-CDS-E_fasciculatus_S2_contig7872:3385..34251696842447.9332376-CDS-E_fasciculatus_S2_contig7872:3385..3425Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7872 3386..3425 +
1696842447.9419737-CDS-E_fasciculatus_S2_contig7872:4060..43541696842447.9419737-CDS-E_fasciculatus_S2_contig7872:4060..4354Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7872 4061..4354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7872.16035.1

>prot_E_fasciculatus_S2_contig7872.16035.1 ID=prot_E_fasciculatus_S2_contig7872.16035.1|Name=mRNA_E_fasciculatus_S2_contig7872.16035.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=305bp
MPSFGQMTLQELAGMMAVYGLKKKSKREMTERLEHIWKTLHPASAAAEGG
MPAAGDGTATSSSSSSSGRSRKRDAPTRDSDSGGDPSSCLPASSQGRRRG
RAAIEARPTFSPAATAAATSSASIPRRPPLSRPPRGGNGSRGTGFSQEEA
VPPLPSTSRSQQQQQQQQGFLADNSSGGKGGDADLEERIRGVIMGYAPLH
EDILLLKTVDLSAIHTLIKNAGGVKCTKKDLASYLDARGITFVDRGGVKR
RARGGGEREVEGGEEEQQSQQRKRKKKRRPGATGAVAAGQRSGLYITRGG
AICR*
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mRNA from alignment at E_fasciculatus_S2_contig7872:1678..4939+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7872.16035.1 ID=mRNA_E_fasciculatus_S2_contig7872.16035.1|Name=mRNA_E_fasciculatus_S2_contig7872.16035.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3262bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7872:1678..4939+ (Ectocarpus fasciculatus EfasUO2)
CGGCGACATCGCCTTGTAGTCGGGGTCGGTCGCAACATCGCGGACTTGGA
AGTCCGGCGGCGCGGCGCAGGCATCACCGCTCACCGTCATCTCCTCCGGT
AGAAGATGAAGAGGCGGGGGCTCCGTGTTCGAGTGCCTCTGGAGGGGGGA
ACGGGCACGACGCCGAGCTGCGGGAGGTGATGCCTTCGTTCGGGCAGATG
ACGCTCCAGGAGCTGGCCGGGATGATGGCGGTGTACGGCCTCAAGAAGAA
GTCGAAGAGGTTGGTGCACCTTCTTTTTTTTTCACGCCTCCCCGCGTTGT
AAGGGTTTCTACGTCAGTAGGATGTATTGGCAGGTGTTTTTGCGTAGCAG
GAGCATGTTGGGGAGGGGTATCCAATAGGGGTACTAGCAGTGCTCCGTCT
CGAAAAAGACATGTACGGAATACTTCGGCTCTCTCTTTCGCTCTCTCCGT
CTGTCTTTCCCCCAAGATTATGTATTTGCGACAGCAAGGTTTGGCGCATA
TCCTCGTATTGTTTTGCCTACAGAAACTCCGCACAAATTCGCTCCGACGT
TGGCGGTGACACTGTTGGCACCAACAATGACGCTCCGTTTAGAGGTACAA
TACCTATACCTCCCTCACATACCCTTCTTTACGTTCAAACGCCCCCCACA
TCCCCGACCCCCTGCGTGATCCCTAGAGAGATGACGGAACGCCTGGAACA
CATCTGGAAGACCCTACACCCCGCTTCTGCTGCCGCCGAAGGAGGCATGC
CTGCGGCGGGGGACGGGACCGCGACTTCTTCCTCGTCGTCGTCGTCCGGC
AGAAGCAGAAAGCGAGATGCACCTACTCGGGATAGCGATAGCGGTGGCGA
CCCTTCTTCTTGTCTGCCGGCGTCTTCCCAAGGTCGTCGGCGAGGCAGAG
CTGCGATAGAGGCGAGGCCCACCTTTTCGCCGGCGGCGACGGCGGCGGCG
ACGTCATCGGCAAGCATTCCACGGCGCCCTCCGGTAAGCTAGTTGCGAAC
GAGCAAACACGTCTTTTGTGGAATATCGCTCTTGTGTTTGAACATAATAT
GGGCCATTCGGCTACGAATGTGATTATCGCGATGGATGCTGCGGAACCTT
ATTTTTGTCTCTTTTTTCGCTTTTTGTGCCTGCCTGCCCGCAAACCCGCT
GGCCCGCCGCCCCGTTCGAAATTCGAAACAGCTCTCCAGGCCACCCCGCG
GTGGTAATGGTAGTCGGGGCACTGGATTTTCGCAAGAAGAGGCGGTGCCC
CCGCTGCCATCGACGAGCAGGTCGCAGCAGCAGCAGCAGCAGCAGCAGGG
GTTTCTGGCCGATAACAGCAGCGGGGGGAAAGGGGGCGACGCGGACCTCG
AGGAGAGAATACGCGGCGTAATCATGTAAGACTTCTGGCGCCCGCGCGGC
CGGGGGGGGGAGGCGTACTCATGTTGTGCGTGCCTTACTTGTTAGACAAA
TGTCCACGCGGGGGGGGCATAGAAGTACGAGGTATCGTGAACAAGTGTAA
TTGTAAGGAGAGTGGTGTGGTTGTTCCATGTTTCATGATGGGCGCCATTC
CATTTTTTAGAGGTGGCCCGCTGACGTGTTCTCGACGTTGGATTCAAAGA
CGTACCACCAATGTTTCCTTTCTACAACATGAACCAACTACATATTTGTA
TACTTTGTTGCCCCCCCCCTCCCATCGCCTCGTCTGCCTTCCTGGTGTTA
TTGCACAGGGGATACGCCCCACTCCACGAGGATATTCTTCTCCTGAAGGT
GAGTCCACGGCAAGCAGAGTGCGTGTGCGCTTGTATAACCATGGTTGAAA
CTACTGTCCCCCCGCCATGGGACACAGAACCTACCGGCACCCCCCACCCC
CTCTTTTTTTCTGTCTGTGGGCGCTGATGCCGAAGGGAGCACGAGGTAAC
AAGTAGGTTTGAACAAGTGTGGGCAACGAAGCGTTTTGACACCGCCGTCC
TCTGTGGCTCGCGTGTTTTGTTTTTTTTTTCTGCGAAGGGTTGATGTCCC
TCCCATCCTGTCGTGAGTGACTCCGGCAGCAAACATGACACCCCTTCCCC
TCGTGCCTGTCGATCTATCTTGTTGAGTGGCACAAAGAGACAAATAAGAC
GACGCCGCCCGTGATGTTGTCGGTGCTACAGTTTGGTCCGTCCGCGGGAC
TTTTTTCAGTTATTTGCGTTTCAGGTCATAACATCCGAAACACCTCGAGC
TTGAGGCAAATTCAGCCGTCCTATGCATAGTGATCCCCACATCAAGGGGG
AGAAAAAAAAAATGATCCCCGCCGCGGCGTAGCAGCGCCATTTCGTCGAC
GTAGCAGCGCCATTACGTCGACGTAGCAGCGCCATTTCGTCGACGACGCC
GATACACCCCCCCCCCCCCCTTTCCTATCTCAGACTGTGGACCTGTCCGC
GATCCACACGTTGATCAAGAACGCCGGGGGGGTGAAGTGCACGAAGAAGG
ACTTGGCCTCCTACCTCGACGCCCGAGGGATAACGTTTGTCGACAGAGGC
GGGGTCAAGAGACGCGCCCGGGGGGGCGGGGAGCGGGAAGTCGAAGGAGG
AGAAGAAGAACAACAATCGCAACAACGGAAGAGAAAGAAGAAGAGGCGTC
CTGGGGCGACGGGGGCAGTGGCGGCGGGGCAAAGGTCCGGTTTGTATATA
ACACGGGGTGGGGCTATCTGTAGATAGCGGCGGTCGGGGGGGAGAGAGGC
GAATTTCCGGCAGATTTAAGGAGAGGCGTGCGGCAGGGATGTGTATGTTC
GGGTGGTGTCGGTGACAAAATGTTGCCCTTCCTCATGTGACACCATGCCA
AACGAAATTTGTTGGCACTTTCCAGCGAAAATGTTGTGGGCTCTTGGTAT
TGCTACAACTGTCAAGAATGTCGACAGTTTGGTGGTGCGTGTACATCTGC
GCCTGTTTTTTATGGTTGCAGTCTCTACGGACGGTGTTTTGTACCATTCG
CTTTATTTTCGTGTGATTCATAGGCCGAGCCTCAAGAGGTTTTGGGGCAC
TTTGAGCCTGTGCGTGGCCTAGCATATATACCATCGTTGTTCTGTAAAAA
GCAGCAGTTCGAGGTACAGGCCAGGAGAGAGCAATACCGCTCATCTAGTG
CATGTGTCGTCACATTGTTTCTACCTTTCCTTTCCGCGTGTGCTGTCGTG
CCAAGATCGTCCGCGTTTTCGATATCAGAACGGAACCCACGCATGACTTT
TTGTTGCGTGATGCGTCACGCCCGTGTAATTTTCGGGAGAACGTCATTGC
TGTCGTTAGGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7872:1678..4939+

>mRNA_E_fasciculatus_S2_contig7872.16035.1 ID=mRNA_E_fasciculatus_S2_contig7872.16035.1|Name=mRNA_E_fasciculatus_S2_contig7872.16035.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=915bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7872:1678..4939+ (Ectocarpus fasciculatus EfasUO2)
ATGCCTTCGTTCGGGCAGATGACGCTCCAGGAGCTGGCCGGGATGATGGC
GGTGTACGGCCTCAAGAAGAAGTCGAAGAGAGAGATGACGGAACGCCTGG
AACACATCTGGAAGACCCTACACCCCGCTTCTGCTGCCGCCGAAGGAGGC
ATGCCTGCGGCGGGGGACGGGACCGCGACTTCTTCCTCGTCGTCGTCGTC
CGGCAGAAGCAGAAAGCGAGATGCACCTACTCGGGATAGCGATAGCGGTG
GCGACCCTTCTTCTTGTCTGCCGGCGTCTTCCCAAGGTCGTCGGCGAGGC
AGAGCTGCGATAGAGGCGAGGCCCACCTTTTCGCCGGCGGCGACGGCGGC
GGCGACGTCATCGGCAAGCATTCCACGGCGCCCTCCGCTCTCCAGGCCAC
CCCGCGGTGGTAATGGTAGTCGGGGCACTGGATTTTCGCAAGAAGAGGCG
GTGCCCCCGCTGCCATCGACGAGCAGGTCGCAGCAGCAGCAGCAGCAGCA
GCAGGGGTTTCTGGCCGATAACAGCAGCGGGGGGAAAGGGGGCGACGCGG
ACCTCGAGGAGAGAATACGCGGCGTAATCATGGGATACGCCCCACTCCAC
GAGGATATTCTTCTCCTGAAGACTGTGGACCTGTCCGCGATCCACACGTT
GATCAAGAACGCCGGGGGGGTGAAGTGCACGAAGAAGGACTTGGCCTCCT
ACCTCGACGCCCGAGGGATAACGTTTGTCGACAGAGGCGGGGTCAAGAGA
CGCGCCCGGGGGGGCGGGGAGCGGGAAGTCGAAGGAGGAGAAGAAGAACA
ACAATCGCAACAACGGAAGAGAAAGAAGAAGAGGCGTCCTGGGGCGACGG
GGGCAGTGGCGGCGGGGCAAAGGTCCGGTTTGTATATAACACGGGGTGGG
GCTATCTGTAGATAG
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