mRNA_E_fasciculatus_S2_contig7872.16034.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7872.16034.1
Unique NamemRNA_E_fasciculatus_S2_contig7872.16034.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7872.16034.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH0_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.770e-26
Identity = 75/105 (71.43%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:   16 SSNQKSRRGVTASVRSDHREDXXXXXXXXXXXXXXXXXXXXXXANGPGSSDEIGDASGDGTDVVDEYALEDEYGFEDHDYCAWGDDNDLSYVPSPDNDGIADERQ 330
            SS++KS RGVT S R+  R     XXXXXXXXXX  XXXXX  ANGPGS+DE G+ASGDG+D++D+YALEDEYGF+DH+YCAWGD+NDLS+VPSPD+DG+ADERQ
Sbjct:  825 SSSRKSHRGVTTSGRNCQRX----XXXXXXXXXXMTXXXXXDGANGPGSTDERGEASGDGSDIIDQYALEDEYGFDDHNYCAWGDENDLSFVPSPDSDGVADERQ 925
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BLAST of mRNA_E_fasciculatus_S2_contig7872.16034.1 vs.
Match: Structure-specific (endonuclease subunit SLX4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.810e-26
Identity = 83/104 (79.81%), Postives = 92/104 (88.46%), Query Frame = 1 
Query:   19 SNQKSRRGVTASVRSDHREDXXXXXXXXXXXXXXXXXXXXXXANGPGSSDEIGDASGDGTDVVDEYALEDEYGFEDHDYCAWGDDNDLSYVPSPDNDGIADERQ 330
            S +KS RGVTASVR+  R+ XXXXXX XXXXXXXXXXXXXX ANGP S+DE G+ASGD  DVVDEYALEDEYGF+DHDYCAWGD+NDLS+VPSPD DG+ADERQ
Sbjct: 1127 SRRKSHRGVTASVRNCQRK-XXXXXXVXXXXXXXXXXXXXXGANGPDSTDERGEASGDSDDVVDEYALEDEYGFDDHDYCAWGDENDLSFVPSPDIDGVADERQ 1229
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7872.16034.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.770e-2671.43protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Structure-specific1.810e-2679.81endonuclease subunit SLX4 n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7872contigE_fasciculatus_S2_contig7872:1134..1529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size398
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842447.9768198-CDS-E_fasciculatus_S2_contig7872:1133..15291696842447.9768198-CDS-E_fasciculatus_S2_contig7872:1133..1529Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7872 1134..1529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7872.16034.1prot_E_fasciculatus_S2_contig7872.16034.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7872 1134..1529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7872.16034.1

>prot_E_fasciculatus_S2_contig7872.16034.1 ID=prot_E_fasciculatus_S2_contig7872.16034.1|Name=mRNA_E_fasciculatus_S2_contig7872.16034.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=132bp
ANDSYSSNQKSRRGVTASVRSDHREDEDEEEEEDDEFAMMDSGGGGGGAN
GPGSSDEIGDASGDGTDVVDEYALEDEYGFEDHDYCAWGDDNDLSYVPSP
DNDGIADERQQQPPPPPPSPSPPLSPTQRPPD
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mRNA from alignment at E_fasciculatus_S2_contig7872:1134..1529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7872.16034.1 ID=mRNA_E_fasciculatus_S2_contig7872.16034.1|Name=mRNA_E_fasciculatus_S2_contig7872.16034.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=396bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7872:1134..1529+ (Ectocarpus fasciculatus EfasUO2)
GCCAATGATTCTTACAGTAGCAATCAGAAGTCCCGTCGAGGCGTCACGGC
AAGCGTAAGGAGTGACCATAGGGAGGATGAGGACGAGGAGGAGGAAGAAG
ATGACGAGTTTGCGATGATGGACAGCGGCGGCGGCGGAGGCGGCGCCAAT
GGCCCGGGCTCAAGCGACGAGATAGGTGACGCTAGCGGTGACGGTACCGA
CGTTGTCGACGAGTACGCCCTGGAGGACGAATACGGCTTCGAGGACCATG
ACTATTGCGCCTGGGGTGACGACAACGACTTGTCGTATGTTCCCTCGCCC
GACAACGACGGTATCGCCGACGAGCGGCAGCAGCAGCCGCCGCCGCCACC
ACCGTCGCCGTCACCGCCGCTTTCGCCGACACAACGGCCCCCCGAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7872:1134..1529+

>mRNA_E_fasciculatus_S2_contig7872.16034.1 ID=mRNA_E_fasciculatus_S2_contig7872.16034.1|Name=mRNA_E_fasciculatus_S2_contig7872.16034.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=396bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7872:1134..1529+ (Ectocarpus fasciculatus EfasUO2)
GCCAATGATTCTTACAGTAGCAATCAGAAGTCCCGTCGAGGCGTCACGGC
AAGCGTAAGGAGTGACCATAGGGAGGATGAGGACGAGGAGGAGGAAGAAG
ATGACGAGTTTGCGATGATGGACAGCGGCGGCGGCGGAGGCGGCGCCAAT
GGCCCGGGCTCAAGCGACGAGATAGGTGACGCTAGCGGTGACGGTACCGA
CGTTGTCGACGAGTACGCCCTGGAGGACGAATACGGCTTCGAGGACCATG
ACTATTGCGCCTGGGGTGACGACAACGACTTGTCGTATGTTCCCTCGCCC
GACAACGACGGTATCGCCGACGAGCGGCAGCAGCAGCCGCCGCCGCCACC
ACCGTCGCCGTCACCGCCGCTTTCGCCGACACAACGGCCCCCCGAT
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