mRNA_E_fasciculatus_S2_contig7869.16029.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7869.16029.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII0_9PHAE) HSP 1 Score: 285 bits (728), Expect = 2.210e-85 Identity = 288/519 (55.49%), Postives = 304/519 (58.57%), Query Frame = 1
Query: 109 MKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRRRKFESEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGDALDSVGISRSGGRGDAAAA---------------------VAANPGRRVEGSKTREESDRPPPWGGGSPSATSTSPETATATRSPARRPPVLQAKEVRPTSPPPQPQMRHQ------------ERWGKRGRGEKRGSSCSDDNSS--SISRGSAESPSWSRGVPRKRRFPSKGWARAAETGEGERLPASPPGDSRGRAWQTSRRDEWPSGGVS-----GGGETGREXXXXXXXXXXXXXXXXXXXAVAPFCSSSAAAVSCYNRGPAEDLRPAADGSRPLSPKVVARVPRSRGEAXXXXXXXXXXXXXXXXYVDHXXXLPERQASRGRGDVETTPPYTSTRPXXXXXXXXXXXXXXXXXXXXXXXSPAVATAVGEAAVAQGVRRCRPPYPQQEVHDDMDHTAGRVVSVSPLKKAVTGDGVDEEGPDGRG 1545
MKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRRRKF+SEAXXXXXXXXXXXXXXXXXXX YGDAL S G+SRS +A P RR++GSK A RPPVL+ +E TS QPQ E W K GRGEKRGSSCSDD SS S S GSAESPSWSRGVPRKRRFPSKGWARAA G ER PASP GD+ GR WQTS +E SGGV GG E GRE XXXXXXXXXXX +++AA VSCYN PAEDLRP A GSRP SPK VARVPR R E XXXXXXX VD XX XXXXXXXXXXXXXXXXXXXXXX SPA AV AV Q RRCRP YP+QEV DDMD+TAGRVVSVSPLKKAVT +G DEEGPD +G
Sbjct: 1 MKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRRRKFDSEAXXXXXXXXXXXXXXXXXXXSLKDKERNRGGFNKCGGGGGRYGDALGSSGVSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATKPVRRIQGSKRXXXXXXXXXXXXXXXXX-----XXXXXXXXXAGRPPVLKTEEAPSTS---QPQXXXXXXXXXXXXXXXXEHWRKPGRGEKRGSSCSDDRSSTSSTSGGSAESPSWSRGVPRKRRFPSKGWARAAGRGGDERAPASPSGDTCGRTWQTSGGEERASGGVGVGACGGGREVGRESSRRNGSSXXXXXXXXXXXXXXXXXAAAAAPVSCYNNVPAEDLRPTAGGSRPYSPKDVARVPR-REEGAXXXXXXXRGVSQRNQSVDRHXXX----XXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPA---AVAGKAVEQAGRRCRPSYPKQEVRDDMDYTAGRVVSVSPLKKAVTREGGDEEGPDHQG 503
BLAST of mRNA_E_fasciculatus_S2_contig7869.16029.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV1_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 1.920e-17 Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 1
Query: 1648 VGSYAGRAAALRNPWAGSLHPKGQQPLAPKDLLLMLRPNDEGFFDCAGAEKRRGTREATQIEGG 1839
+GSYAG AA LRN WAGSL P+ QQPLAPKDLLLMLRPN EGFFDC GA+K+ GT+ A I G
Sbjct: 1 MGSYAGWAAGLRNQWAGSLRPREQQPLAPKDLLLMLRPNSEGFFDCDGADKKGGTQAAHMIGAG 64
BLAST of mRNA_E_fasciculatus_S2_contig7869.16029.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ7_ECTSI) HSP 1 Score: 76.6 bits (187), Expect = 6.220e-14 Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 2
Query: 1658 MRGGRRLSGTRGLEACTRRGSNR*PPKTCCSCSAPMTKASSIAPAPRRDVAPEKR 1822
MRGGRR+SGT GLEAC RR SNR PPKTCCSC AP KASS A APRR A ++R
Sbjct: 1 MRGGRRVSGTYGLEACARRNSNRWPPKTCCSCFAPTAKASSTAAAPRRKAALKRR 55
BLAST of mRNA_E_fasciculatus_S2_contig7869.16029.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L009_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 9.270e-14 Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1
Query: 79 LRKSCDYCARMKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRRRK 237
LRKSCDYC R+KRACDG +PC+LC+RR K C R R+KSGPAKG KYAPRR++
Sbjct: 10 LRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTKYAPRRKR 62
BLAST of mRNA_E_fasciculatus_S2_contig7869.16029.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF9_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 9.320e-14 Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1
Query: 79 LRKSCDYCARMKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRRRK 237
LRKSCDYC R+KRACDG +PC+LC+RR K C R R+KSGPAKG KYAPRR++
Sbjct: 18 LRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTKYAPRRKR 70
BLAST of mRNA_E_fasciculatus_S2_contig7869.16029.1 vs.
Match: Zinc (finger transcriptional regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM5_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 5.570e-12 Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1
Query: 79 LRKSCDYCARMKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRR 231
LRKSCDYC RMKR C GG+PCALC+RR K C R ++++SGPAKG KY R+
Sbjct: 23 LRKSCDYCVRMKRGCSGGTPCALCNRRNKNCIRSIKKRSGPAKGTKYCKRK 73
BLAST of mRNA_E_fasciculatus_S2_contig7869.16029.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F3_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 2.250e-11 Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 79 LRKSCDYCARMKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRRRKFES 246
LRKSCD C R+KRACDG SPC LC RR + C R ++RKSGPAKG KY RR + E+
Sbjct: 34 LRKSCDLCVRLKRACDGQSPCQLCLRRRETCTRSVKRKSGPAKGTKYTTRRVRMEA 89
BLAST of mRNA_E_fasciculatus_S2_contig7869.16029.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ9_ECTSI) HSP 1 Score: 77.0 bits (188), Expect = 5.620e-11 Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 79 LRKSCDYCARMKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRRRKFES 246
LRKSCD C R+KRACDG +PC LC RR + C R ++RKSGPAKG KY RR + E+
Sbjct: 62 LRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSRMEA 117 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7869.16029.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7869.16029.1 >prot_E_fasciculatus_S2_contig7869.16029.1 ID=prot_E_fasciculatus_S2_contig7869.16029.1|Name=mRNA_E_fasciculatus_S2_contig7869.16029.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=614bp QGKSGGEEHGHEKQQQQQQQQQQQPGLRKSCDYCARMKRACDGGSPCALCback to top mRNA from alignment at E_fasciculatus_S2_contig7869:3234..6144- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7869.16029.1 ID=mRNA_E_fasciculatus_S2_contig7869.16029.1|Name=mRNA_E_fasciculatus_S2_contig7869.16029.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2911bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7869:3234..6144- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7869:3234..6144- >mRNA_E_fasciculatus_S2_contig7869.16029.1 ID=mRNA_E_fasciculatus_S2_contig7869.16029.1|Name=mRNA_E_fasciculatus_S2_contig7869.16029.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1842bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7869:3234..6144- (Ectocarpus fasciculatus EfasUO2)back to top |