mRNA_E_fasciculatus_S2_contig786.16023.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig786.16023.1
Unique NamemRNA_E_fasciculatus_S2_contig786.16023.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig786.16023.1 vs.
Match: PIG-H (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0D9_9PHAE)

HSP 1 Score: 460 bits (1183), Expect = 4.390e-158
Identity = 244/261 (93.49%), Postives = 248/261 (95.02%), Query Frame = 1 
Query:   40 MYTCERLGENATKFKYAPSDGDHSCGGAWVRAAVAVAGASLFAQ-SLAVKGSAFLGGVGLVVVLFCLAWSLGCRSRVREESLLVVRELGVQVTTKYVDGREKSTFLDKAKIKAILINEGITMHRVVFYLAFVVAGRDKMVVAFENLQPRLNVLIKIYRGTRAAILGEAGDEQQSQTNDMMSMGFDSGAPGFPAASASVPTTGIVGGGG-EIGERRSGSRAAGRRGDSGLRRTDRIARRQAQARLAGASAAVSGWPPPHMPN 816
            MYTCERLGENATKFKYAP DGDHSCGGAWVRAA+AVAGASLF Q SLAVKGSAFLGGVGLVV LFCLAWSLGCRSRVREESLLVVRELGVQVTT YVDGREKSTFLDKAKIKAILINEGITMHRVVFYLAFVVAGRDKMVVAFENLQPRLNVLIKIYRGTRAAILGEAGDEQQS+TNDMMSMGFD+GAPGFP AS + PTTGIVGGGG EIGE R G RAAGRRGDSGLRRTDRIARRQAQARLAGASAA SGWPPPHMPN
Sbjct:    1 MYTCERLGENATKFKYAPGDGDHSCGGAWVRAAIAVAGASLFGQQSLAVKGSAFLGGVGLVVALFCLAWSLGCRSRVREESLLVVRELGVQVTTTYVDGREKSTFLDKAKIKAILINEGITMHRVVFYLAFVVAGRDKMVVAFENLQPRLNVLIKIYRGTRAAILGEAGDEQQSRTNDMMSMGFDAGAPGFPTASEAAPTTGIVGGGGGEIGEPRIGPRAAGRRGDSGLRRTDRIARRQAQARLAGASAAASGWPPPHMPN 261
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig786.16023.1 vs.
Match: GPI-GlcNAc (transferase complex, PIG-H component-domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397THB2_9GLOM)

HSP 1 Score: 111 bits (277), Expect = 1.900e-25
Identity = 54/93 (58.06%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:  259 SRVREESLLVVRELGVQVTTKYVDGREKSTFLDKAKIKAILINEGITMHRVVFYLAFVVAGRDKMVVAFENLQPRLNVLIKIYRGTRAAILGE 537
            S VREES+L VR++G+QV T Y++GR  S F+D++KI  I+INEGITM +V FY+  +V GRD+MVV FE+L P+LNVL+++YRGTR  I  E
Sbjct:   11 SIVREESILSVRDVGIQVKTIYMNGRSVSRFIDRSKISDIIINEGITMLQVKFYMVIIVEGRDRMVVVFEHLLPKLNVLLQVYRGTRYVIFNE 103
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig786.16023.1 vs.
Match: hypothetical (protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450F5E)

HSP 1 Score: 110 bits (274), Expect = 1.500e-24
Identity = 55/118 (46.61%), Postives = 86/118 (72.88%), Query Frame = 1 
Query:  184 KGSAFLGGVGLVVVLFCLAWSLGCRSRVREESLLVVRELGVQVTTKYVDGREKSTFLDKAKIKAILINEGITMHRVVFYLAFVVAGRDKMVVAFENLQPRLNVLIKIYRGTRAAILGE 537
            K   F+  + ++ +  CL   +     +REESL V+RELG+Q+  KY+  +E   F++K++I +I+INEGI+ +RVV+Y+AF+V G+ KM++AF++L PR+NVL+KIYRGTRA + GE
Sbjct:   50 KSFMFVMIIAIIAIRLCLKMFI-----IREESLTVIRELGIQLRKKYLL-KETVEFIEKSRISSIIINEGISRYRVVYYMAFIVEGKQKMILAFDDLIPRINVLLKIYRGTRALMYGE 161
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig786.16023.1 vs.
Match: Putative (glycosyltransferase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BEJ0_POLPP)

HSP 1 Score: 110 bits (276), Expect = 2.040e-24
Identity = 54/91 (59.34%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:  265 VREESLLVVRELGVQVTTKYVDGREKSTFLDKAKIKAILINEGITMHRVVFYLAFVVAGRDKMVVAFENLQPRLNVLIKIYRGTRAAILGE 537
            VREESL V+RELGVQ+  KY    E + F++K KI++I+INEGI+ +RV FY+AF+V G+ KMV+AF++L PR+NVL+KIYRGTR+ + GE
Sbjct:  105 VREESLTVIRELGVQLRKKYYFIGESTRFIEKPKIQSIIINEGISRYRVTFYMAFLVEGKQKMVLAFDDLIPRINVLLKIYRGTRSLMYGE 195
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig786.16023.1 vs.
Match: PIG-H (domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IJ79_PLABS)

HSP 1 Score: 109 bits (273), Expect = 2.370e-24
Identity = 77/174 (44.25%), Postives = 100/174 (57.47%), Query Frame = 1 
Query:   22 CVRLS---RMYTCERLGENATKFKYAPSDGDHSCGGAWVRAAVAVAGASLFAQSLAVKGSAFLGGVGLVVVLFCLAWSLGCRSRVREESLLVVRELGVQVTTKYVDGREKSTFLDKAKIKAILINEGITMHRVVFYLAFVVAGRDKMVVAFENLQPRLNVLIKIYRGTRAAILG 534
            C RL    R++T  R G       +  S  D++ G   V  A  + G      S+AV  SA L  VG+ V     A S  C     EESLLVV+ELGVQ+T K   G+    F+DK KI +I+INEGIT  RV+FY+AF+V G+  MV+AF +L PR+ VL+ IYRG RAA+ G
Sbjct:    7 CKRLPSDIRLFTLRRRG-------WPVSIADYAVG---VACAACLLGRVAVKGSIAVTDSAVLLAVGMAVWRVTAAMSSVC-----EESLLVVQELGVQITRKTYSGKSSHIFIDKDKISSIVINEGITAWRVIFYMAFIVEGQSDMVLAF-SLLPRMAVLLPIYRGIRAAVYG 164
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig786.16023.1 vs.
Match: PIG-H (domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RAZ1_9EUKA)

HSP 1 Score: 109 bits (273), Expect = 2.370e-24
Identity = 61/123 (49.59%), Postives = 83/123 (67.48%), Query Frame = 1 
Query:  172 SLAVKGSAFLGGVGLVVVLFCLAWSL-GCRSRVREESLLVVRELGVQVTTKYVDGREKSTFLDKAKIKAILINEGITMHRVVFYLAFVVAGRDKMVVAFENLQPRLNVLIKIYRGTRAAILGE 537
            S+A + S  L    L++ +  + W +      V EE+LLVV+ELGVQ+T K   G+E   F+DK KI +I+INEGITM RV++Y+AF+V G+  MV+AF NL PR+ VL+ IY GTRAA  GE
Sbjct:   44 SIACRQSIILTDPFLIICICLMTWRITSLMKTVCEETLLVVQELGVQITRKSFSGKESHVFIDKDKISSIVINEGITMFRVIYYMAFIVNGQSDMVLAF-NLLPRMGVLLPIYVGTRAAFYGE 165
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig786.16023.1 vs.
Match: PIG-H (domain-containing protein n=5 Tax=Rhizophagus TaxID=1129544 RepID=A0A015KF86_RHIIW)

HSP 1 Score: 109 bits (273), Expect = 6.130e-24
Identity = 51/91 (56.04%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:  265 VREESLLVVRELGVQVTTKYVDGREKSTFLDKAKIKAILINEGITMHRVVFYLAFVVAGRDKMVVAFENLQPRLNVLIKIYRGTRAAILGE 537
            V+EES+L +R++G+QV T Y++GR  S F+DK+KI  I+INEGITM +V FY+A +V G+D+MVV FE+L P+LN+L+++YRGTR  I  E
Sbjct:   93 VKEESILSIRDVGIQVKTIYMNGRSVSKFIDKSKISDIIINEGITMLQVKFYMAIIVDGQDRMVVVFEHLLPKLNILLQVYRGTRYVIFNE 183
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig786.16023.1 vs.
Match: PIG-H (domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q2G5_9MYCE)

HSP 1 Score: 107 bits (267), Expect = 1.380e-23
Identity = 51/88 (57.95%), Postives = 71/88 (80.68%), Query Frame = 1 
Query:  265 VREESLLVVRELGVQVTTKYVDGREKSTFLDKAKIKAILINEGITMHRVVFYLAFVVAGRDKMVVAFENLQPRLNVLIKIYRGTRAAI 528
            V+EESL+V+RELGVQ+  KY    +   F+DK KI+ ++INEGIT H V+FY+AF+V G++KMV+AFE+L PRLN+L++IYRGT + I
Sbjct:   75 VKEESLIVMRELGVQIKRKYFLRPDTLEFIDKNKIQNVIINEGITKHNVIFYMAFIVEGKNKMVLAFEDLIPRLNILLQIYRGTLSVI 162
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig786.16023.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HNR9_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 2.550e-23
Identity = 55/111 (49.55%), Postives = 80/111 (72.07%), Query Frame = 1 
Query:  205 GVGLVVVLFCLAWSLGCRSRVREESLLVVRELGVQVTTKYVDGREKSTFLDKAKIKAILINEGITMHRVVFYLAFVVAGRDKMVVAFENLQPRLNVLIKIYRGTRAAILGE 537
            GV L V LF L W     S V+EE L V+RELGVQ+TT++  G+E S F+DK +IKA++INEG   + V+ Y+ F+V G  ++V AFE++ PR+NVL++I+R T++ +LGE
Sbjct:   76 GVSLFVYLFRLYWKA---SSVKEERLTVIRELGVQITTRFWSGKETSLFIDKNRIKAVVINEGFRFYNVITYMGFIVEGETQLVNAFEHIFPRMNVLLQIFRATQS-LLGE 182
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig786.16023.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI79_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.810e-23
Identity = 73/189 (38.62%), Postives = 107/189 (56.61%), Query Frame = 1 
Query:   46 TCERLGENATKFKYAPSDGDHSCGGAWVRAAVAVAGASLFAQSLAVKGSAFLGGVGLVVVLFCLAWSLGCR----SRVREESLLVVRELGVQVTTKYVDGREKSTFLDKAKIKAILINEGITMHRVVFYLAFVVAGRDKMVVAFENLQPRLNVLIKIYRGTRAAILGEAGDEQQSQTNDMMSMGFDSGA 600
            T E +G+++ +F+     G+     AW+ A      A++ A +L V+       V    VL  LA +   R    SRV+EESLLV++ELGVQ+ TK V G E+  FLDK  IK +L+NEGI    V FYLAFV+   D++ +AF +L+PRL  L + + GTRA + GE  +  +    ++   G D+GA
Sbjct:   14 TVEYIGKHSREFRIEAPRGEPGSWDAWLDANGRRVAAAMLAVALVVELWTARYSVWTSPVLASLAIAAAVRHVRRSRVQEESLLVIQELGVQLKTKTVGGGERLRFLDKENIKTVLLNEGIQRCSVNFYLAFVMRDADRLEIAFPSLRPRLPALQQAFLGTRAVLFGETDEAAERSDGEL---GDDAGA 199
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig786.16023.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PIG-H4.390e-15893.49domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
GPI-GlcNAc1.900e-2558.06transferase complex, PIG-H component-domain-contai... [more]
hypothetical1.500e-2446.61protein n=1 Tax=Acytostelium subglobosum LB1 TaxID... [more]
Putative2.040e-2459.34glycosyltransferase n=1 Tax=Polysphondylium pallid... [more]
PIG-H2.370e-2444.25domain-containing protein n=1 Tax=Plasmodiophora b... [more]
PIG-H2.370e-2449.59domain-containing protein n=1 Tax=Spongospora subt... [more]
PIG-H6.130e-2456.04domain-containing protein n=5 Tax=Rhizophagus TaxI... [more]
PIG-H1.380e-2357.95domain-containing protein n=1 Tax=Polysphondylium ... [more]
Hypothetical2.550e-2349.55protein (Fragment) n=2 Tax=Vannella sp. CB-2014 Ta... [more]
Hypothetical2.810e-2338.62protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig786contigE_fasciculatus_S2_contig786:830..4308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score437.2
Seed ortholog evalue5.4e-120
Seed eggNOG ortholog2880.D7FTR8
Preferred namePIGH
Model size1638
KEGG koko:K03858,ko:K14650
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,ko03022,ko05168,map00563,map01100,map03022,map05168
Hectar predicted targeting categorysignal anchor
GOsGO:0000506,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016254,GO:0019538,GO:0019637,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0071704,GO:0090407,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1903509,GO:1990234
Exons5
EggNOG free text desc.phosphatidylinositol N-acetylglucosaminyltransferase activity
EggNOG OGsKOG4551@1,KOG4551@2759
Ec32 ortholog descriptionGPI-GlcNAc transferase complex, PIG-H component, conserved domain
Ec32 orthologEc-14_001090.1
Cds size780
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig786.16023.1prot_E_fasciculatus_S2_contig786.16023.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig786 1649..4269 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842446.8110847-UTR-E_fasciculatus_S2_contig786:829..16481696842446.8110847-UTR-E_fasciculatus_S2_contig786:829..1648Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig786 830..1648 -
1696842446.8879437-UTR-E_fasciculatus_S2_contig786:4269..43081696842446.8879437-UTR-E_fasciculatus_S2_contig786:4269..4308Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig786 4270..4308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842446.8294694-CDS-E_fasciculatus_S2_contig786:1648..19581696842446.8294694-CDS-E_fasciculatus_S2_contig786:1648..1958Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig786 1649..1958 -
1696842446.8395436-CDS-E_fasciculatus_S2_contig786:2502..26631696842446.8395436-CDS-E_fasciculatus_S2_contig786:2502..2663Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig786 2503..2663 -
1696842446.850605-CDS-E_fasciculatus_S2_contig786:3079..31531696842446.850605-CDS-E_fasciculatus_S2_contig786:3079..3153Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig786 3080..3153 -
1696842446.8621557-CDS-E_fasciculatus_S2_contig786:3533..36361696842446.8621557-CDS-E_fasciculatus_S2_contig786:3533..3636Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig786 3534..3636 -
1696842446.8734-CDS-E_fasciculatus_S2_contig786:4137..42691696842446.8734-CDS-E_fasciculatus_S2_contig786:4137..4269Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig786 4138..4269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig786.16023.1

>prot_E_fasciculatus_S2_contig786.16023.1 ID=prot_E_fasciculatus_S2_contig786.16023.1|Name=mRNA_E_fasciculatus_S2_contig786.16023.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=260bp
MYTCERLGENATKFKYAPSDGDHSCGGAWVRAAVAVAGASLFAQSLAVKG
SAFLGGVGLVVVLFCLAWSLGCRSRVREESLLVVRELGVQVTTKYVDGRE
KSTFLDKAKIKAILINEGITMHRVVFYLAFVVAGRDKMVVAFENLQPRLN
VLIKIYRGTRAAILGEAGDEQQSQTNDMMSMGFDSGAPGFPAASASVPTT
GIVGGGGEIGERRSGSRAAGRRGDSGLRRTDRIARRQAQARLAGASAAVS
GWPPPHMPN*
back to top

mRNA from alignment at E_fasciculatus_S2_contig786:830..4308-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig786.16023.1 ID=mRNA_E_fasciculatus_S2_contig786.16023.1|Name=mRNA_E_fasciculatus_S2_contig786.16023.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3479bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig786:830..4308- (Ectocarpus fasciculatus EfasUO2)
CAGCAACCACCTTGCCCTGCTTGTGTTCGCCTCTCCCGGATGTACACGTG
CGAGAGGCTGGGAGAGAACGCAACAAAATTCAAGTACGCTCCTAGCGACG
GTGATCACTCGTGCGGTGGAGCGTGGGTGAGGGCGGCAGTTGCGGTTGCT
GGGGCGAGCCTCTTCGCACAGGTACAAGATACATTGACTACGTAACTCTT
TTGTCTGCCGTTCTCCCGCGGTGGTGAGTGGTGAGGGCAGTAGCATGCAG
CATTTTATTGAAGGGATGACGCCGGGACACCGAGTAGCAGCAACGAAGAC
CCTTCAACTCCAGGAATTTTTGTGCTTGGCACAACGCCTGTCAATGTCTT
CACTTTTGTACTCTGTGTTCAAGCGTCCATGATTGCACGCACGCAGATTG
ATCCCATTCTGATCTCATTCTCTCTCGCGAACACAGACTTGGAGATGACA
TATATGCCGCATATATAACTCACCCGGTGATAAACAATTTTCAACTCTTT
AGTCTAAACATTTATAATTGGTGACATTCGAGGGTGGTATTGTGTGTGAG
GGGTGTGGTATCTTCGGTCACCTGATTTCTTGACCTGGGGAGAGTATTGC
GCAAAAACACCTACCTCACCCCGCTTCCTCCTGGCGTCTTTCGACTCTTG
TTTTGCGCTTTGCACACAACAGTCGCTCGCTGTGAAGGGCTCGGCTTTCC
TCGGAGGGGTTGGGCTCGTTGTAGTCTTGTTCTGCCTGGCTTGGTCTCTT
GGATGTCGATCGCGAGTTCGAGAAGGTGCGTCGTGTCCGTCTTTATTTTC
GAAGAGGGTGCTTCGCGAGACACCACGCCTGGACCGTTTAGAGGCTGTCT
TGCGTTTTCTTCGATTGGCGGGATCTTACTGATATACTATGTAGGTTTCC
CGTCGTTCCTCAATTTCGGCAATGCTCTCGTGACAGTGGTGGCAGCATCG
GTGGTTGCAAAGGGGCGAAGCAAACCAGTTCGCAGTGGGTGAAGACTACA
CGTACGCGCCCACCTTTGTTTTCAACAAACACCGCCGTGTCGTAGGCGGC
AAGCAGCCCGTGTTCTGTGCCTGAATCAACCAACAACACCTTGTTTCGCC
CATTCACGTGATTGTGTAATCCTTTTCTCTCGCCCTCGTGGGTATCCTTA
CACAGAGTCTCTGCTGGTAGTGCGCGAGCTGGGGGTGCAGGTGACCACCA
AGTATGTCGACGGCCGAGAGAAGAGCACGGTGAGGCTATATGAATCCTTA
TCTCAACGGCCTGTTATTCTCTTATTGGTACAACTGTTTGGGGGGGGGGC
AACTACCGCACTCGTTGTTGCTCGTTGCTGTGGTCGTGGGCACCTCTATA
ATCGGTCTGGTCGAAGGCGGCTTGTGCAGCAAGACATCAGCCCGTTCGAT
GATTTGGTGGTGGCCGTTAGCGCTGCGCAAGCTTTCCGGCAGGGGCATGA
TGCCTATTCGTTGCTCTTACTCCCAGAAGCACATGAGGCTTGTCGATACC
TCTCACATCCCTTTCCAACGGGACACGGAGAAGCGTGCCGATAGGCCCAC
GCTGCCCTATGTAGGCCTTCCTATTCGTTGCTTATGCAGCTGATTTTCTT
CCTCGCCTGTCGTTCCCACCCTCCTCGTTGTTCGCTCTGGTTTAGTTCTT
GGACAAAGCGAAGATCAAGGCCATCTTAATCAACGAGGGTATTACCATGC
ACAGAGTCGTGTTCTACCTAGCCTTCGTGGTTGCGGGGCGGGACAAGATG
GTAGTGGCCTTCGAGAACCTCCAGCCGCGCTTGAACGTTCTCATCAAGAT
TTACAGGTGTGTGTGTGTGTGCGGTCCCACCGTCTTCTGGCAGCTTATGT
ACTTGTGAGAGACTGCTGTCCCCGCTTTGTCCTGCATCCTTAAGCGATAA
CCGTCATGTTCATCCGCAACGAGTTGGCATCAGGAAAAAACGAGTCCAGT
TTGTTCCGCTGGCAGAAGTTCAGTGATTGGAGCGAGTCCTTCGGAGGGAG
TACAAAAGCATCCGCGAGAGCAATTATAATAGTAGATCCCATTGTGCAAA
ACTGCACCATAACTCAATTCAGAACGACACCGAGCTCGGCTTTGACGATT
ATTTACGATAGCAGCTTCTGTACATATTTGACTTTAGTCCCCACCAGCAG
GAAAGTGCTTTGTATTGCAACCCTGGTCTAAACTGAAAAACATTTTTGAC
ACAGACGTCTGGAAACAGCGTGTGGGGCCTTGGGAGAGTAGTTATGGCTG
GAAGCTGGAACGCATTCCCCCCAAAGCCTATTGACAACATTGTTCGAGCT
TGGCATTTTTTTCAACATTTTTTTAATCATCCAATCGGCCCGTCCCGCAG
GGGTACACGTGCAGCAATACTCGGAGAGGCAGGCGACGAGCAGCAGTCGC
AGACCAATGACATGATGTCGATGGGATTCGACTCCGGTGCTCCCGGTTTC
CCAGCAGCTTCTGCCTCGGTCCCTACCACGGGCATTGTTGGGGGTGGTGG
TGAGATTGGCGAGCGTAGAAGCGGCTCGAGGGCGGCGGGTCGAAGGGGAG
ACTCGGGCCTGCGGAGAACAGACAGAATAGCCAGGAGGCAGGCGCAGGCG
AGACTTGCGGGAGCGTCCGCGGCGGTTAGTGGCTGGCCACCACCGCACAT
GCCGAACTAATAGTTGCACGAGAAGTGCGTTTGGATAGTCTATCCGGAAG
CTCTGTATTCCAGCCAGGTCGAAGATCTGGTGAAGTATTGTACTTCAGCC
TGCTGGTTTATAATGTGCTCCCGCGCCGTTTAGGCGAGGAAGTACCAAGC
GAAGCCATGCAGTTACCGTTCGCTTAGGTAAGGTAGGAAGGCGAGCTGAA
GAGGTTTCGTTATGGGTTAAACGTCAGTTGGAAAGTCTCGCCGCCTTTCG
CACGCATGGTAAACGGAAGTTGTAAAAATCACACGAGATTCGACCACTTT
TGAGGATCCCATGGTCTAAGCTACAGGCTAAAGGATGAGTTTGTTTGTTT
CGTAAGTAGGACGAAACCGAATCTGGTCTCTCTAAGTGTCACACGTGAAA
ATGGGATCATGTGGAGACATTTTATGTATGAAAGTTGGAAACACGTACCT
TGCGTCCATCGCATGTGGAATCTCTTGAGATACTGCTGAGTATGATTTCT
TGAGGGTTGTTTTTCTCCGGTATACGGCGCCTATTTGTAGCTAGCGGAGA
TATACAGTTCGGACCGTGGTGTAGAGAACGGGAGGAGGCGTGACTCTTGC
TCTCCTATCAGAGCTCATGTAGTTACTCTCGTTGAATATCAGACCCCGTT
TTCGTGTGGTAGTGTGTAATAGCGGCTCCACGTTAGTATGGCCTGCTTTT
TTTTGTGAATGTGTGCGGTTGAGGAGTCGCTGCTGCTCTTTTGTGAATAT
AATACTTGTTCGATGTCTTCATCGTCTTGCATTTTACCGCACAGGCTGAA
GTGGAAACATGTCAACGACCCCCAATTCG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig786:830..4308-

>mRNA_E_fasciculatus_S2_contig786.16023.1 ID=mRNA_E_fasciculatus_S2_contig786.16023.1|Name=mRNA_E_fasciculatus_S2_contig786.16023.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=780bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig786:830..4308- (Ectocarpus fasciculatus EfasUO2)
ATGTACACGTGCGAGAGGCTGGGAGAGAACGCAACAAAATTCAAGTACGC
TCCTAGCGACGGTGATCACTCGTGCGGTGGAGCGTGGGTGAGGGCGGCAG
TTGCGGTTGCTGGGGCGAGCCTCTTCGCACAGTCGCTCGCTGTGAAGGGC
TCGGCTTTCCTCGGAGGGGTTGGGCTCGTTGTAGTCTTGTTCTGCCTGGC
TTGGTCTCTTGGATGTCGATCGCGAGTTCGAGAAGAGTCTCTGCTGGTAG
TGCGCGAGCTGGGGGTGCAGGTGACCACCAAGTATGTCGACGGCCGAGAG
AAGAGCACGTTCTTGGACAAAGCGAAGATCAAGGCCATCTTAATCAACGA
GGGTATTACCATGCACAGAGTCGTGTTCTACCTAGCCTTCGTGGTTGCGG
GGCGGGACAAGATGGTAGTGGCCTTCGAGAACCTCCAGCCGCGCTTGAAC
GTTCTCATCAAGATTTACAGGGGTACACGTGCAGCAATACTCGGAGAGGC
AGGCGACGAGCAGCAGTCGCAGACCAATGACATGATGTCGATGGGATTCG
ACTCCGGTGCTCCCGGTTTCCCAGCAGCTTCTGCCTCGGTCCCTACCACG
GGCATTGTTGGGGGTGGTGGTGAGATTGGCGAGCGTAGAAGCGGCTCGAG
GGCGGCGGGTCGAAGGGGAGACTCGGGCCTGCGGAGAACAGACAGAATAG
CCAGGAGGCAGGCGCAGGCGAGACTTGCGGGAGCGTCCGCGGCGGTTAGT
GGCTGGCCACCACCGCACATGCCGAACTAA
back to top