mRNA_E_fasciculatus_S2_contig785.16020.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig785.16020.1
Unique NamemRNA_E_fasciculatus_S2_contig785.16020.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig785.16020.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT84_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 3.500e-70
Identity = 173/177 (97.74%), Postives = 173/177 (97.74%), Query Frame = 1
Query:    1 VVPFVSRASAVAGANLDPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALRETMTVQMQKMSTRTFEGVLHPVFQEEEFTLIIAGAILGAIAGFLQMLLSTKGVRDAAKKAASLAAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVGLGRRVGCTAQ 531
            VVPFVSRASAVAGANLDPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALRETMTVQMQKMSTRTFEGVLHPVFQEEEFTLIIAGAILGAIAGFLQMLLSTKGVRDAAKKAASLAAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   RAVG GRRVGCTAQ
Sbjct:  310 VVPFVSRASAVAGANLDPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALRETMTVQMQKMSTRTFEGVLHPVFQEEEFTLIIAGAILGAIAGFLQMLLSTKGVRDAAKKAASLAAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRERAVGFGRRVGCTAQ 486          
BLAST of mRNA_E_fasciculatus_S2_contig785.16020.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF94_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 8.340e-69
Identity = 159/178 (89.33%), Postives = 160/178 (89.89%), Query Frame = 1
Query:    1 VVPFVSRASAVAGANLDPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALRETMTVQMQKMSTRTFEGVLHPVFQEEEFTLIIAGAILGAIAGFLQMLLSTKGVRDAAKKAASLAAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVGLGRRVGCTAQW 534
            VVPFVSRASAVAGANLDPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALRETMTVQMQKMSTRTFEGVLHPVFQE+EFTLIIAGAILGAIAGFLQMLLSTKGVRDAAK AASLAAEK             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   RAVG GRRVGCTAQW
Sbjct:  551 VVPFVSRASAVAGANLDPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALRETMTVQMQKMSTRTFEGVLHPVFQEDEFTLIIAGAILGAIAGFLQMLLSTKGVRDAAKNAASLAAEKAAATADGVVDVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRERAVGFGRRVGCTAQW 728          
BLAST of mRNA_E_fasciculatus_S2_contig785.16020.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z427_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.360e-28
Identity = 59/99 (59.60%), Postives = 73/99 (73.74%), Query Frame = 1
Query:    1 VVPFVSRASAVAGANLDPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALRETMTVQMQKMSTRTFEGVLHPVFQEEEFTLIIAGAILGAIAGFLQMLLS 297
            V PF+ +AS + G  +D    KGLA +   +L DHVHVL DYTDKTL L+ETM ++M+ MS+RTFEGVLHPVFQE+EFTLI+AG  LG  AG +QM  S
Sbjct:  299 VTPFIKQASCIVGTPVDDDLAKGLAHKVGMRLKDHVHVLDDYTDKTLRLQETMDLKMKMMSSRTFEGVLHPVFQEDEFTLIVAGGALGLAAGLIQMYFS 397          
BLAST of mRNA_E_fasciculatus_S2_contig785.16020.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FQE8_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.730e-23
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   10 FVSRASAVAGANLDPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALRETMTVQMQKMSTRTFEGVLHPVFQEEEFTLIIAGAILGAIAGFLQMLLSTKGVR 312
            FVS  +     ++DP  +   A  A+ K  DH+HVLHDY ++ L LRET+ VQM+KMS+  FE VLHP+FQE+E TLIIAG +LG +AG +Q  L T  ++
Sbjct:  268 FVSSVTGALQIDIDPAMMSSAAKSAIVKFPDHIHVLHDYVNEKLGLRETLRVQMEKMSSAQFEQVLHPIFQEDELTLIIAGGVLGLLAGLIQQGLETGSIQ 368          
BLAST of mRNA_E_fasciculatus_S2_contig785.16020.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YWT2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.930e-21
Identity = 46/84 (54.76%), Postives = 63/84 (75.00%), Query Frame = 1
Query:   49 DPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALRETMTVQMQKMSTRTFEGVLHPVFQEEEFTLIIAGAILGAIAGFLQMLLST 300
            +P  +   A +AV KL +HVHVLH Y D+ L LRET+ V+M++M++  FE VLHP+F+E+E TLI+AGAILG IAG +Q  L+T
Sbjct:   35 NPEVMSMAAAKAVEKLPNHVHVLHSYVDQQLGLRETLRVKMEQMTSAQFERVLHPIFEEDELTLILAGAILGLIAGLIQQGLTT 118          
BLAST of mRNA_E_fasciculatus_S2_contig785.16020.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IMM7_OSTTA)

HSP 1 Score: 96.7 bits (239), Expect = 2.740e-20
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   40 ANLDPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALRETMTVQMQKMSTRTFEGVLHPVFQEEEFTLIIAGAILGAIAGFLQMLLSTKG 306
            A LD   V  +  R V +L DHV VLHDYTD TL L+  M  +MQ M+ + FE VLHPVF+++E TLII+GA+LGAIAG++Q + S KG
Sbjct:  330 AELDIELVDEICQRVVDELPDHVDVLHDYTDSTLGLQALMREKMQLMTPQAFERVLHPVFEQDETTLIISGAVLGAIAGYIQQVYSVKG 418          
BLAST of mRNA_E_fasciculatus_S2_contig785.16020.1 vs.
Match: Unnamed (product n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M541_OSTTA)

HSP 1 Score: 96.7 bits (239), Expect = 4.940e-20
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   40 ANLDPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALRETMTVQMQKMSTRTFEGVLHPVFQEEEFTLIIAGAILGAIAGFLQMLLSTKG 306
            A LD   V  +  R V +L DHV VLHDYTD TL L+  M  +MQ M+ + FE VLHPVF+++E TLII+GA+LGAIAG++Q + S KG
Sbjct:  530 AELDIELVDEICQRVVDELPDHVDVLHDYTDSTLGLQALMREKMQLMTPQAFERVLHPVFEQDETTLIISGAVLGAIAGYIQQVYSVKG 618          
BLAST of mRNA_E_fasciculatus_S2_contig785.16020.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8KMS2_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.950e-20
Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   10 FVSRASAVAGANLDPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALRETMTVQMQKMSTRTFEGVLHPVFQEEEFTLIIAGAILGAIAGFLQMLLSTKGVR 312
            FV R +     +L+P  V  +  RA  KL +HVHVL+ Y D TL L++T+  +M+ M++  FE VLHP+F+E+E TLIIAGAILG +AG +Q  L T  +R
Sbjct:  203 FVHRTTKALDVSLEPEVVSKMVNRATSKLPNHVHVLYPYVDSTLNLQQTLQTKMEAMTSAQFERVLHPIFEEDELTLIIAGAILGFLAGLVQQGLETGQIR 303          
BLAST of mRNA_E_fasciculatus_S2_contig785.16020.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SYF1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.030e-19
Identity = 46/84 (54.76%), Postives = 63/84 (75.00%), Query Frame = 1
Query:   49 DPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALRETMTVQMQKMSTRTFEGVLHPVFQEEEFTLIIAGAILGAIAGFLQMLLST 300
            +P  +   A +AV KL +HVHVLH Y D+ L LRET+ V+M++M++  FE VLHP+F+E+E TLI+AGAILG IAG +Q  L+T
Sbjct:  255 NPEVMSMAAAKAVEKLPNHVHVLHSYVDQQLGLRETLRVKMEQMTSAQFERVLHPIFEEDELTLILAGAILGLIAGLIQQGLTT 338          
BLAST of mRNA_E_fasciculatus_S2_contig785.16020.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RWW1_OSTLU)

HSP 1 Score: 94.7 bits (234), Expect = 1.700e-19
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   10 FVSRASAVAG---ANLDPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALRETMTVQMQKMSTRTFEGVLHPVFQEEEFTLIIAGAILGAIAGFLQMLLSTKGVRD 315
            FV   +A  G   A+LD   +  +  + V KL +H+HVLH+YTD TL L+E M  +M+ M+ + FE VLHP+F+++E TLII+GA+LGA AG++Q + S K   D
Sbjct:  362 FVVEEAAARGMSVADLDVSLIDEVCRKVVEKLPEHIHVLHEYTDATLGLKELMRERMKLMTPQEFERVLHPIFEQDELTLIISGAVLGAAAGYIQQIYSVKPPAD 466          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig785.16020.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.500e-7097.74protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.340e-6989.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.360e-2859.60protein (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
Hypothetical2.730e-2349.50protein (Fragment) n=1 Tax=Minutocellus polymorphu... [more]
Hypothetical4.930e-2154.76protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Uncharacterized2.740e-2055.06protein n=1 Tax=Ostreococcus tauri TaxID=70448 Rep... [more]
Unnamed4.940e-2055.06product n=1 Tax=Ostreococcus tauri TaxID=70448 Rep... [more]
Hypothetical4.950e-2047.52protein n=1 Tax=Proboscia inermis TaxID=420281 Rep... [more]
Hypothetical1.030e-1954.76protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Uncharacterized1.700e-1945.71protein n=1 Tax=Ostreococcus lucimarinus (strain C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig785contigE_fasciculatus_S2_contig785:22621..24371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score230.7
Seed ortholog evalue5.3e-58
Seed eggNOG ortholog2880.D8LT84
Model size537
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs29ENS@1,2RMTT@2759
Ec32 ortholog descriptionProtein of unknown function DUF445
Ec32 orthologEc-12_005620.1
Cds size537
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842446.4436257-CDS-E_fasciculatus_S2_contig785:22620..227941696842446.4436257-CDS-E_fasciculatus_S2_contig785:22620..22794Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig785 22621..22794 -
1696842446.4540205-CDS-E_fasciculatus_S2_contig785:23413..235991696842446.4540205-CDS-E_fasciculatus_S2_contig785:23413..23599Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig785 23414..23599 -
1696842446.4633896-CDS-E_fasciculatus_S2_contig785:23913..239971696842446.4633896-CDS-E_fasciculatus_S2_contig785:23913..23997Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig785 23914..23997 -
1696842446.4760273-CDS-E_fasciculatus_S2_contig785:24278..243711696842446.4760273-CDS-E_fasciculatus_S2_contig785:24278..24371Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig785 24279..24371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig785.16020.1prot_E_fasciculatus_S2_contig785.16020.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig785 22621..24371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig785.16020.1

>prot_E_fasciculatus_S2_contig785.16020.1 ID=prot_E_fasciculatus_S2_contig785.16020.1|Name=mRNA_E_fasciculatus_S2_contig785.16020.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=179bp
VVPFVSRASAVAGANLDPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALR
ETMTVQMQKMSTRTFEGVLHPVFQEEEFTLIIAGAILGAIAGFLQMLLST
KGVRDAAKKAASLAAEKAAAAADGVVDAGGGLVEGVGAPVQAGAQAIQTG
AQVAQTRVQAVRKRAVGLGRRVGCTAQW*
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mRNA from alignment at E_fasciculatus_S2_contig785:22621..24371-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig785.16020.1 ID=mRNA_E_fasciculatus_S2_contig785.16020.1|Name=mRNA_E_fasciculatus_S2_contig785.16020.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1751bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig785:22621..24371- (Ectocarpus fasciculatus EfasUO2)
GTCGTCCCCTTCGTATCGAGGGCGTCAGCTGTGGCGGGGGCCAACCTAGA CCCGCTCGCCGTGAAGGGTCTTGCGCTCAGGGCTGTTGGGAAGGTGATGT TTTTACTCTCACCCTCTCTTTCCCCTTGTCCGTGACTCCACAACCAGGGA CTTGCCCCACCGCAAGGATGCGCTGTTTGCGTCTCCGTGGTCTCAATCCC ATGGTCTTGTAGTATTCTATCTACAGCGCATGCTTCGTTCTTGTATGATG GCGTCGTGTTTGGGTATCGAAGAGACATGCGCATGGTAGGAGAGCTCGCT GCTGGTCTCGCTGAAAATCGCCGTTGCCCTCATGGTGCTTGCTCCTTCTC CGCGATATTCCCGAACCTTTATAGCTGGGGGACCACGTGCACGTCCTGCA CGACTACACCGACAAGACCTTGGCCTTGAGGGAGACCATGACCGTGCAGA TGCAAAAGGTGGGTCTTTCTTTTTGTATTCTTACGAAGCGGCGCGACGGT TGAGTTAGAAAAGCGAACGAAGGGAGTGGGCGTGCTCAGTAGCATGCGTG GTGACGGAGGGCGTATGTATTGATGTAGACCCGCTGCATCCCCACAAAGC CGGGGCGGGACGAAGGCAAGATGCATGAGCACGGCATGCTTTTTGAGGGC CGATGCACGTAGAAGTGCGCTGTCATCGTTCGTGCTGCTTCGCGTGCCAA CGAACTTGTTTGTCCCGCCTCCGCCTTATCTTCCCACCCGCTTTCTTGCC GAAAACAAACCGCATAAACCAGATGTCCACCCGCACGTTCGAGGGCGTGC TTCATCCGGTGTTCCAGGAAGAAGAATTCACGCTCATCATCGCCGGCGCC ATCCTTGGAGCCATCGCGGGTTTCCTGCAGATGCTGCTCAGCACCAAGGG GGTCAGGGACGCGGCGAAGAAAGCGGCGTCTCTGGCGGCGGAAAAGGCGG CCGCCGCGGTAAGTAAGAGTTGCCCAGATAGTTTCCGTTCATGCACGACC GCGTGTAAGGAACCAGAGGTCACGTGCGTGCGTGACGCATCACGGCGGTG TCCCTTGCGTTTGCTCTCTTCCGAGTCGCGTCCCCAATACTGCCGTCGTC TTCACGCGTTCCGCCCCCGATAGTACTCATCCAGGCCCAGCTTTGTTTCA TTTCTGTCCCCAAGAGTGCTACAGGTGCGTTGTGATGAGAAAACAACGCG GCAAGTTACAACTATGAGAAGAATATTCCGGGGAAACGGATGGGAAAACA CAGAACCCCTGGGCGGATTCAAATCCTAGCCACTTCCGCCAACGTTTGAG GGGGCTGCGAACCTTGGAGGCGAATGAGATATACTTCAGTATGGTGATAG CACGGTTAAAAGGGAGAAGAGCTCGTTCCAGTATGCATAACCGATGAAAA CCACAACTCCTATTTCCAGTACGCGACCCGTTGTGTTGCTTGATGGAGCC ACGCTACAAATATTTTCTCGCTACTGTGCAGCCCTATGACAGCTATGCAC CCATGACAACACGTCTCCCTAAACTCCTCCTCGCCGCCACCCGCTGCCCA TCCGTGCGCTTGCGTGCATGCACACAGGCGGACGGGGTTGTAGACGCCGG AGGCGGTCTGGTGGAGGGTGTCGGGGCGCCCGTCCAGGCGGGGGCACAGG CGATTCAGACCGGGGCCCAGGTGGCGCAGACGAGGGTTCAAGCGGTCCGG AAAAGGGCGGTCGGATTGGGGCGGCGAGTGGGCTGCACGGCGCAATGGTG A
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig785:22621..24371-

>mRNA_E_fasciculatus_S2_contig785.16020.1 ID=mRNA_E_fasciculatus_S2_contig785.16020.1|Name=mRNA_E_fasciculatus_S2_contig785.16020.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=537bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig785:22621..24371- (Ectocarpus fasciculatus EfasUO2)
GTCGTCCCCTTCGTATCGAGGGCGTCAGCTGTGGCGGGGGCCAACCTAGA
CCCGCTCGCCGTGAAGGGTCTTGCGCTCAGGGCTGTTGGGAAGCTGGGGG
ACCACGTGCACGTCCTGCACGACTACACCGACAAGACCTTGGCCTTGAGG
GAGACCATGACCGTGCAGATGCAAAAGATGTCCACCCGCACGTTCGAGGG
CGTGCTTCATCCGGTGTTCCAGGAAGAAGAATTCACGCTCATCATCGCCG
GCGCCATCCTTGGAGCCATCGCGGGTTTCCTGCAGATGCTGCTCAGCACC
AAGGGGGTCAGGGACGCGGCGAAGAAAGCGGCGTCTCTGGCGGCGGAAAA
GGCGGCCGCCGCGGCGGACGGGGTTGTAGACGCCGGAGGCGGTCTGGTGG
AGGGTGTCGGGGCGCCCGTCCAGGCGGGGGCACAGGCGATTCAGACCGGG
GCCCAGGTGGCGCAGACGAGGGTTCAAGCGGTCCGGAAAAGGGCGGTCGG
ATTGGGGCGGCGAGTGGGCTGCACGGCGCAATGGTGA
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