mRNA_E_fasciculatus_S2_contig7849.16016.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7849.16016.1
Unique NamemRNA_E_fasciculatus_S2_contig7849.16016.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7849.16016.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7849contigE_fasciculatus_S2_contig7849:1183..2860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size449
Hectar predicted targeting categoryother localisation
Exons3
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842446.0802214-CDS-E_fasciculatus_S2_contig7849:1182..12611696842446.0802214-CDS-E_fasciculatus_S2_contig7849:1182..1261Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7849 1183..1261 +
1696842446.0900319-CDS-E_fasciculatus_S2_contig7849:1691..19381696842446.0900319-CDS-E_fasciculatus_S2_contig7849:1691..1938Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7849 1692..1938 +
1696842446.099021-CDS-E_fasciculatus_S2_contig7849:2738..28021696842446.099021-CDS-E_fasciculatus_S2_contig7849:2738..2802Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7849 2739..2802 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842446.1071382-UTR-E_fasciculatus_S2_contig7849:2802..28601696842446.1071382-UTR-E_fasciculatus_S2_contig7849:2802..2860Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7849 2803..2860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7849.16016.1prot_E_fasciculatus_S2_contig7849.16016.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7849 1183..2802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7849.16016.1

>prot_E_fasciculatus_S2_contig7849.16016.1 ID=prot_E_fasciculatus_S2_contig7849.16016.1|Name=mRNA_E_fasciculatus_S2_contig7849.16016.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=130bp
SSSRGGCLLEAQSSVQQHRHSPSQQAGTHTGGGRGQRRRKAVQWRCQNYP
SLACHNTTPKLLLHDSIETPSCLRCLSSDCLQGYYCCRCPRDSPDDFVSW
ASLNQHDHGRRRRRRRERLFVRSVFAAQD*
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mRNA from alignment at E_fasciculatus_S2_contig7849:1183..2860+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7849.16016.1 ID=mRNA_E_fasciculatus_S2_contig7849.16016.1|Name=mRNA_E_fasciculatus_S2_contig7849.16016.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1678bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7849:1183..2860+ (Ectocarpus fasciculatus EfasUO2)
TCATCGTCGAGGGGGGGCTGCCTCCTTGAGGCCCAGTCTAGTGTACAGCA
GCACCGCCATTCTCCCTCCCAGCAAGCTGGTGAGAGCAGCAAGCAGTCAG
TACTTCGTACTTGCTACGGTAGAGGCCTACAAAGCGCTCCACCGCCACAT
CCACCAGGCGTTTGGACATAACACCAAAAAACACAGAAGCGCTGCAGAAG
AGGAATTTAACAGGTTAGCCTCATTGGCAACCGCACGTATACACACACAC
TCATCAACGAGAGAGATAATCGACTTACAGCAGTTAGTTGTAGCGGTTGA
TGCGACACCATGCTGAGGCAACGAAAGCTGGGTTTTGCGGGAGGGGGGAG
GCACGCGCTACAGCAAGAAACCCGTGGAAAATATTATCCCAAATCCGGTG
TTGTTGCGAAGTGCGAAAAGAACAAAAAATGAACAGCACGTTTGTTAATT
TTTCAATCATCAAATATTTGTACACGCAAGACGTAACAATAATTCCTTCG
GTTCCGCAGGCACACACACGGGCGGCGGGCGAGGACAAAGGAGGCGGAAA
GCGGTTCAATGGCGTTGTCAGAATTACCCGTCTCTCGCCTGCCATAACAC
AACCCCGAAGCTGCTGCTGCATGACTCGATAGAGACGCCGAGTTGCTTGC
GCTGTTTGTCTAGCGACTGCCTGCAGGGGTACTACTGCTGTAGATGCCCA
AGGGACTCACCGGATGATTTTGTGTCATGGGCGAGCTTGAACCAACACGA
CCACGGGTGAGTGTTGATGATTGATGTGTCGCTGCAGTTCCTACTGGCGG
AGTACTCTCTGTGAGTCCAATTGCAGCGTTTGGCGGCTGGCAAGCGGTTA
TGTACCAATCCGATCTATCTGCTGCCTCGAATGAGCTAGGTAGTATGTAG
CTGGGAGCCTGTGTACACAACAACAGGAAAGGAGCAACACATGTTTTGTA
CACTGAATCTGAAACAAAGAATAGCCTCAGGACGACGAATCTTCACGGAC
ACCGACACTGGTTTGACTGCACACAGGAGCTCGCTTGCCTCGTCATGAAT
CCAGCCCATGTCGTTCAACGCCCACGCTGGGGGTAACCGCAATGGTCTGC
TTGCTTGTAGTTGGAGGAGAAAGTTGCACTCTGGGTTCCCAGATCGCCGG
TGTAGCCGTTGTAGGATGATGGTATTATACACCTTGTGGTGGCAACTGCT
GCTGCTGTGGTCAAGGTGTTCCGATATTTGGTTTATAGCAGGTTTGGAGA
TGCGGGGGAGCTTAGAGAGCTCAGGACGAACGAGCCTCTTCGAACCGCCG
CTTGTATGAAAGGTAGATTTTCGGATTTTCGGAGAGGGCGCAGCATCTTG
GGGGCTTGGGGGGGAATCGCGCGCGATATATTCTAGCCGATTGGCATAAA
ATAAAAAGTCGGATCTTTCTTCTTTTCTGCATGAAAGTACTCTTCTTGAG
ACGAGAAGTAGAACGACGACCCGGCAAGCCGCCACGCTCATCGCGCCTCG
TTGCAGTGTGCAACAACACCAAGACACCGGAACCGTTTGCTTGTTCATGG
ACGCAGGAGGAGGAGGAGGAGGAGGAGGGAGCGCTTGTTCGTGCGGTCGG
TCTTTGCCGCGCAAGACTGACGTACAGACACACACACATCAGGAGGAGGA
GAGGTGAACCGACGAGGAGGAGAGCAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7849:1183..2860+

>mRNA_E_fasciculatus_S2_contig7849.16016.1 ID=mRNA_E_fasciculatus_S2_contig7849.16016.1|Name=mRNA_E_fasciculatus_S2_contig7849.16016.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=390bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7849:1183..2860+ (Ectocarpus fasciculatus EfasUO2)
TCATCGTCGAGGGGGGGCTGCCTCCTTGAGGCCCAGTCTAGTGTACAGCA
GCACCGCCATTCTCCCTCCCAGCAAGCTGGCACACACACGGGCGGCGGGC
GAGGACAAAGGAGGCGGAAAGCGGTTCAATGGCGTTGTCAGAATTACCCG
TCTCTCGCCTGCCATAACACAACCCCGAAGCTGCTGCTGCATGACTCGAT
AGAGACGCCGAGTTGCTTGCGCTGTTTGTCTAGCGACTGCCTGCAGGGGT
ACTACTGCTGTAGATGCCCAAGGGACTCACCGGATGATTTTGTGTCATGG
GCGAGCTTGAACCAACACGACCACGGGAGGAGGAGGAGGAGGAGGAGGGA
GCGCTTGTTCGTGCGGTCGGTCTTTGCCGCGCAAGACTGA
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