mRNA_E_fasciculatus_S2_contig7846.16014.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7846.16014.1
Unique NamemRNA_E_fasciculatus_S2_contig7846.16014.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: U2 (small nuclear ribonucleoprotein A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC4_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 4.940e-122
Identity = 328/406 (80.79%), Postives = 331/406 (81.53%), Query Frame = 2
Query:    2 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGGAPAANXXXXXXXXXXXXXXXPSAAETTEVEKASPQTASPQEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMDVDGAEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAGDMEQEEGGEPKLSEAEIKSYKVAQL 1219
            VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINL+PSLKQLDFQKVTVKERESA RLARSQAGQAMIQDVAQQAEKAKTFTPGAPAA+EQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG      XXXXXXXXXXXXXXX      TEVE ASPQTAS    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SMDVDGAEEG                                  XXXXXXXXXXXXXXXXXXXXXXXXXXXX                  G GDMEQEEGG PKLSEAEIKSYK  +L
Sbjct:   38 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLIPSLKQLDFQKVTVKERESAVRLARSQAGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGXXXXXXXXXXXXXXXXXXXXXXXXX-XTEVEMASPQTASXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDVDGAEEGKTAEAPVPGADAGNGEAEEEPPATSEAGRGGEGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAETAEETATEAPAETGEGEGDMEQEEGGGPKLSEAEIKSYKGGKL 440          
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: SAP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q9_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 1.620e-89
Identity = 270/374 (72.19%), Postives = 276/374 (73.80%), Query Frame = 2
Query:  182 KLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGGAPAANXXXXXXXXXXXXXXXPSAAETTEVEKASPQTASPQEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMDVDGAEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAGDMEQEEGGEPKLSEAEIKSYKVAQLKKALVERGLPTNGLKADLAARLMEAMGY 1303
            +LSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVK            AGQAMIQDVAQQAEKAKTFTPGAPAA+EQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG      XXXXXXXXXXXXXXX     TTEVE ASPQTASP +  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SMDVDGAEEG                                XXXXXXXXXXXXX                                   G GDMEQE+GG PKLSEA+IKSYKV QLKKALVERGLPTNGLKADL+ARLMEAMGY
Sbjct:    2 QLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVK------------AGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGXXXXXXXXXXXXXXXXXXXXXXXX--TTEVEMASPQTASPHD--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDVDGAEEGKTAEAPEASSAKGGADGRGGGDARVGDEGGEEXXXXXXXXXXXXXPAETGE-----------------------------GEGDMEQEDGGGPKLSEADIKSYKVTQLKKALVERGLPTNGLKADLSARLMEAMGY 330          
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: Leucine-rich (repeat-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE59_9STRA)

HSP 1 Score: 188 bits (478), Expect = 8.640e-49
Identity = 110/205 (53.66%), Postives = 139/205 (67.80%), Query Frame = 2
Query:    2 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGGAPAA 616
            VTQDQFD +DFSDNEI+KLDNFPR  RL++LLL NN +++I +D+G  LPNLSCL+LTNN +S L+EL  LG C +LTMLSLL N V   Q+YRLY+I+ +PSLK LDF KV  +ER  A RL +S AG+AM +D+A QA   KTF PG  A     LT   R      I +A T EEI+ L + ++AGI P+   +    A AA
Sbjct:   38 VTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQA---KTFVPGGAA--RAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPAERKELDAAAAAA 237          
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9L1_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.660e-43
Identity = 98/200 (49.00%), Postives = 133/200 (66.50%), Query Frame = 2
Query:    2 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGA-------PAADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 580
            VTQDQFD +DF+DNEIK++DNFP +KRLS+LLL NNHV+++S  L   LPNL CL         L+E+  L  CTKLTMLS ++N ++ +Q+YRLY+I  +P LK LDF KV   ERE AA+L RS AG+ M QDV  ++   KTFTPG        P A+   LT E +      IA A+T EE++ + ++++AG+IP+
Sbjct:   39 VTQDQFDVLDFTDNEIKRVDNFPTFKRLSTLLLSNNHVTRLSPTLSEQLPNLDCLXXXXXXXXNLSEVDNLIGCTKLTMLSFVNNPIIRRQHYRLYVIAKLPQLKALDFVKVKAIEREEAAKLFRSAAGRLMQQDVEAES---KTFTPGEDIPSTTNPMAN---LTAEQKDQVRAVIAAASTPEEVDRIERQLKAGVIPT 232          
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: U2 (small nuclear ribonucleoprotein A'-like n=2 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=A0A3Q1GBX3_9TELE)

HSP 1 Score: 165 bits (417), Expect = 3.040e-43
Identity = 92/202 (45.54%), Postives = 134/202 (66.34%), Query Frame = 2
Query:    2 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 598
             T DQFD +DFSDNEI+KLD FP  +RL +LL+ NN + +I E+L  +LP+L+ L+LTNN +  L +L  L T   LT+LSLL N V NK++YRLY+IN +P ++ LDFQKV +KER+ A ++ + + G  + +D+A+   + KTFTPG  A  E+K T   +A      + IA A+++ E+E L   +QAG IP  + +QG
Sbjct:   16 ATLDQFDTVDFSDNEIRKLDGFPLLRRLKTLLMNNNRICRIGENLEQSLPSLTELVLTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIAR---RTKTFTPGVAAQPEKKRTGPSQADVDAIKNAIANASSLAEVERLKGMLQAGQIPGRDLRQG 214          
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: Small (nuclear ribonucleoprotein polypeptide A' n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3N132_9LABR)

HSP 1 Score: 166 bits (419), Expect = 3.130e-43
Identity = 94/202 (46.53%), Postives = 133/202 (65.84%), Query Frame = 2
Query:    2 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 598
             T DQFD +DFSDNEI+KLD FP  KRL +LL+ NN + ++ E+L  +LP L+ LILTNN +  L +L  L T   LT+LSLL N V NK++YRLYMIN +P ++ LDFQKV  KER+ A ++ + + G  + +D+A+   + KTFTPG PA  E+K T   +A      + IA A+++ E+E L   +QAG IP  + ++G
Sbjct:   39 ATLDQFDTVDFSDNEIRKLDGFPLLKRLKTLLMNNNRICRVGENLEQSLPCLTELILTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYMINKIPQIRVLDFQKVKQKERQEAEKMFKGKRGAQLAKDIAK---RTKTFTPGVPAQLEKKKTGPSQADVEAIKNAIANASSLAEVERLKGMLQAGQIPGRDLREG 237          
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: Small (nuclear ribonucleoprotein polypeptide A' n=6 Tax=Euacanthomorphacea TaxID=123369 RepID=A0A3Q1EK11_9TELE)

HSP 1 Score: 165 bits (417), Expect = 5.970e-43
Identity = 92/202 (45.54%), Postives = 134/202 (66.34%), Query Frame = 2
Query:    2 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 598
             T DQFD +DFSDNEI+KLD FP  +RL +LL+ NN + +I E+L  +LP+L+ L+LTNN +  L +L  L T   LT+LSLL N V NK++YRLY+IN +P ++ LDFQKV +KER+ A ++ + + G  + +D+A+   + KTFTPG  A  E+K T   +A      + IA A+++ E+E L   +QAG IP  + +QG
Sbjct:   39 ATLDQFDTVDFSDNEIRKLDGFPLLRRLKTLLMNNNRICRIGENLEQSLPSLTELVLTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIAR---RTKTFTPGVAAQPEKKRTGPSQADVDAIKNAIANASSLAEVERLKGMLQAGQIPGRDLRQG 237          
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: Small (nuclear ribonucleoprotein polypeptide A' [Latimeria chalumnae] n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2V8V0_LEPSM)

HSP 1 Score: 165 bits (417), Expect = 9.180e-43
Identity = 93/199 (46.73%), Postives = 136/199 (68.34%), Query Frame = 2
Query:    2 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYADRI-------AKATTVEEIEMLSKKIQAGIIP 577
             T DQFD +DFSDNEI++LDNFP   RL +L   NN + +I +++  +LPNL+ LILTNN L  LA+L+ L     LT LSL+ N V++K  YRLY+I+ +P+L+ LDF+KV +KERE A    +S+ G+ +++++ ++A  AKTFTPGAP ADE K  ++   +  D+I       A+ATT+EEIE L++ ++ G IP
Sbjct:   39 ATLDQFDCIDFSDNEIRQLDNFPFLPRLKTLFFNNNRIIRIGDNINESLPNLNSLILTNNSLQELADLERLAKIKSLTNLSLMSNPVISKPDYRLYLIHKLPNLRMLDFRKVKLKEREEAKAKFKSEEGKKVLKEIKKRA--AKTFTPGAPLADESKKENQPHGLNPDQIRNIKAAIARATTLEEIERLNQMLRTGQIP 235          
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: U2 (small nuclear ribonucleoprotein A n=1 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2IG20_ACAPC)

HSP 1 Score: 164 bits (416), Expect = 1.420e-42
Identity = 99/207 (47.83%), Postives = 137/207 (66.18%), Query Frame = 2
Query:    5 TQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAP--------AADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG 601
            T DQFD +D SDNE++KLD FP+  RL +LLL NN + +++E L   LPNL+ L++TNN L  LA+L+ L T  KL M+SLLHN VV K+ YRLY+I+  PSLK LDF+K+ +KERE+A  L +++ G+  ++D+  QA KAKTF PGAP        AA+   LT E        IAKA ++EEIE L++ ++ G +P    + GG
Sbjct:   40 TLDQFDCIDLSDNEVRKLDGFPQLNRLKTLLLNNNRIVRVAEGLELNLPNLNTLVMTNNSLQELADLEPLTTMKKLEMMSLLHNPVVTKRNYRLYVIHKFPSLKVLDFKKIKMKEREAAKALFKTKEGKTQLKDI--QA-KAKTFVPGAPLPEATNNKAANPAGLTPEQVKNIKTMIAKAKSLEEIERLNQMLRTGKMPGEASENGG 243          
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKJ1_HETAK)

HSP 1 Score: 168 bits (426), Expect = 2.660e-42
Identity = 97/198 (48.99%), Postives = 135/198 (68.18%), Query Frame = 2
Query:    2 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQK-LTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYK 592
             TQD FD +DFSDNEIKKL+NFPR +RL++LL  NNH+SKI+E +   +PNLS L     ++  LAEL  L    KLT+LSLL N VV +Q+YRLY+I+  P+LK LDF+KV  +ER+ AARL +S+AGQ M  DV ++    KTF  G     E+K LT++ + +  + I  ATT EE++ L ++++AGI+P+   K
Sbjct:   38 ATQDMFDTIDFSDNEIKKLENFPRMERLTTLLFNNNHISKIAESIKDQVPNLSTLXXXXXRIQHLAELDSLQGLRKLTLLSLLENPVVRRQHYRLYVIHRCPALKYLDFRKVKQQERQEAARLFKSKAGQQMQDDVQKEI---KTFQAGEKQEREKKRLTEDQKNLIREAIKNATTPEEVDKLERQLKAGIMPNLAQK 232          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
U24.940e-12280.79small nuclear ribonucleoprotein A n=1 Tax=Ectocarp... [more]
SAP1.620e-8972.19domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Leucine-rich8.640e-4953.66repeat-domain-containing protein n=1 Tax=Tribonema... [more]
Hypothetical1.660e-4349.00protein (Fragment) n=2 Tax=Florenciella parvula Ta... [more]
U23.040e-4345.54small nuclear ribonucleoprotein A'-like n=2 Tax=Ac... [more]
Small3.130e-4346.53nuclear ribonucleoprotein polypeptide A' n=2 Tax=L... [more]
Small5.970e-4345.54nuclear ribonucleoprotein polypeptide A' n=6 Tax=E... [more]
Small9.180e-4346.73nuclear ribonucleoprotein polypeptide A' [Latimeri... [more]
U21.420e-4247.83small nuclear ribonucleoprotein A n=1 Tax=Acartia ... [more]
Hypothetical2.660e-4248.99protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7846contigE_fasciculatus_S2_contig7846:2069..6791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score373.6
Seed ortholog evalue1.2e-100
Seed eggNOG ortholog2880.D8LSC4
Model size2109
KEGG koko:K11092
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.U2 snRNA binding
EggNOG OGsCOG4886@1,KOG1644@2759
Cds size1281
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7846.16014.1prot_E_fasciculatus_S2_contig7846.16014.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7846 2872..6766 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842445.8787634-UTR-E_fasciculatus_S2_contig7846:2068..28711696842445.8787634-UTR-E_fasciculatus_S2_contig7846:2068..2871Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7846 2069..2871 -
1696842445.9691336-UTR-E_fasciculatus_S2_contig7846:6766..67911696842445.9691336-UTR-E_fasciculatus_S2_contig7846:6766..6791Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7846 6767..6791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842445.8954916-CDS-E_fasciculatus_S2_contig7846:2871..29701696842445.8954916-CDS-E_fasciculatus_S2_contig7846:2871..2970Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7846 2872..2970 -
1696842445.9083312-CDS-E_fasciculatus_S2_contig7846:3979..46511696842445.9083312-CDS-E_fasciculatus_S2_contig7846:3979..4651Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7846 3980..4651 -
1696842445.924169-CDS-E_fasciculatus_S2_contig7846:5209..53981696842445.924169-CDS-E_fasciculatus_S2_contig7846:5209..5398Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7846 5210..5398 -
1696842445.9441135-CDS-E_fasciculatus_S2_contig7846:5865..60271696842445.9441135-CDS-E_fasciculatus_S2_contig7846:5865..6027Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7846 5866..6027 -
1696842445.9569364-CDS-E_fasciculatus_S2_contig7846:6607..67661696842445.9569364-CDS-E_fasciculatus_S2_contig7846:6607..6766Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7846 6608..6766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7846.16014.1

>prot_E_fasciculatus_S2_contig7846.16014.1 ID=prot_E_fasciculatus_S2_contig7846.16014.1|Name=mRNA_E_fasciculatus_S2_contig7846.16014.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=427bp
MDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILT
NNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLD
FQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQKL
TDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGGAPAANGA
AAPAAAAAAAPEKPSAAETTEVEKASPQTASPQEPPATVAAAAGKAAAAP
AAAPTETETAVAAAPAAPTAPAQAAPTETSSMDVDGAEEGKAAEAPAPAA
DAGNGEAEQEPPATSEAVGGGEGKEETSIAKGGADGGGDGDAMVDDGGGE
EAAAEAAEETATEAPAETGVGAGDMEQEEGGEPKLSEAEIKSYKVAQLKK
ALVERGLPTNGLKADLAARLMEAMGY*
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mRNA from alignment at E_fasciculatus_S2_contig7846:2069..6791-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7846.16014.1 ID=mRNA_E_fasciculatus_S2_contig7846.16014.1|Name=mRNA_E_fasciculatus_S2_contig7846.16014.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4723bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7846:2069..6791- (Ectocarpus fasciculatus EfasUO2)
GGTGACCCAAGATCAGTTCGACGCGATGGACTTCTCGGACAACGAGATCA AGAAGCTAGACAACTTCCCCCGGTACAAGCGCCTGTCGTCCCTCCTCCTC TGCAACAACCACGTCTCCAAGATCTCGGAAGACCTCGGCACTGCTCTACC GAACCTCTCCTGCCTGATTCTCACCAACAACAAGGTGAGCGGTAGATACG GAGAGGGGGGGGCGCAGAGAGGACCGGACCATGCGTTCTTCGGTGCCGTC CTTGTCGCAGATTACCAATCCAGTGCGTGGGGGCGGGGGGGCTTTACGGT GAAACGGAGAGGGGGGAAGGACCGAGCGAGCGGCAGACAGAAACGAGATA CAGGAAGGATAGCACTGAATGCGTACAGCGGTGTACTTTTTCTATTATTT TCAAGCCAGGAGGGAAGCCGCGCTCTTCGTGTTCGGGCCTGTTCCGATCG GTTCGAATGTCTTGTTGGGGTTCGATGTTTCGATTGGATATTTCCTAGTT CTTCTGGCGGTAGGTGGAAGTGGTGGTGTCGGTGCAGCGCTAGGAAGGGA GGCATGGCATTTCTGCCGGCTGGTGTTGTGAGGTAGCCACGTTGTCGACC GCTTCTCAGGGTTCGATAACACTGATCACGAAAGTTCGGAGCTATCGTAC CGTCAAGAGGGCGCTTGCAGAAACGATGACGAGATCACCAATTGGCAACT GCTAATATATATACACAACGTCCTCGCGTCCACCTTCTCCCCCACCCCGC TTCTCTACGTGCAGCTCTCCACGCTAGCGGAACTCAAGGGCCTTGGCACC TGTACCAAGCTGACGATGCTATCCTTGCTGCACAACGAGGTGGTAAACAA GCAGTACTACCGACTGTACATGATCAACCTCGTACCCAGCCTCAAGCAGC TGGACTTCCAGAAGGTCACGGTCAAGGTGAGGGCTTGGGTTTGCGTCGAG GGGGGGAGAGAGGAAGGAAGAGAGAGGGCAAGAAACACGAAGAAGTTATT GGCGCAGTTGCGCCGAACTTTTTGTGCCTGGTAACCGTGATTTCTCAAGA GCCCCTCTTCAAGCGGTGGTTGTATGTGTGCGTGCAATTTTTCCGCATGC GGGATCCCGGACGCTGTAAATATGGCCATGGTCGCTGTGTTAGGACCGAA CTCTTTGGCAGCGCGTCTTCTTGGTGCTCTTTAAATGTGTATATTCACGC TTTATGTAGGATGTGCGCGCGAGCTGTTCAATGGTCCATTGGGCATGGGC TAACACCGTACGACAGGTAGCGCTTGATGAACGTGGAAGTCGGTTTTCCC GGCTTCTCGAGAGGCATGCGTCGTCACATGACTTACTCCCAAGCACCCGA CAAGTCCCCCCCCCCCCTGCCCATTGCCATTTCTCATGGCCAGGAGCGAG AGTCGGCAGCCCGATTGGCCAGGTCACAGGCAGGGCAGGCGATGATACAG GACGTGGCGCAGCAGGCGGAGAAGGCTAAAACCTTCACGCCGGGAGCGCC AGCGGCGGACGAACAGAAGCTGACAGACGAGCACAGAGCCATCTACGCCG ACCGCATCGCGAAGGCCACCACGGTAGAGGAGGTGCGTTCTTTTCGATTG GAGGGGGGGGGGGTCATCGCGTGGGCTTGACGGCCGATGCGTTTTGGTTG TCGCGCGTTGAGTGGTACAGGAGAGCAGACCTTTGTTTGTTTGACGGCGG TAGAAGCGTAGGAGGCGCTGATTGACGATTGACCGCGTGTCCTACTCCGA AACAGCGCCTCTTGCTCTTCCATGTGTGCATACAAAGTAAATGCACCGCC TCGTGTAGGCAGGGAGCCCTTTTCACCTCTTGCCATGCTCAGCACTCCGG GGTAGGGCTCGCAATTGGCATGTCCCCGTGGCATGTCTTGCGAGAGCATT GCGAGGAGGGTCTCCCGGCTTCCGAGTACACGGCAGGAGAATAGCCCGAC GGATTGTTGTGTCACTAGCCCGGCAACACCGAGTCGGTATCCCTGCTTCC ACCGCCGTCAAGCCACAGTCTCTCTATCTCTCTCTCTTTCTCTCTCTCTC TGGTCCTTCCTCTCTTCATCTCCCCTCCATCTGTGCCCCATATTTCTTGT CCACTCTCCTCGTTCCCGTGTGCATCTATTCGTCTCGCAGATCGAAATGC TCTCCAAGAAGATCCAAGCTGGCATTATCCCGTCAGCGAACTACAAGCAG GGCGGCGGTGCGCCGGCGGCGAACGGGGCTGCTGCGCCAGCCGCCGCCGC GGCGGCGGCTCCGGAAAAGCCTTCGGCCGCCGAAACAACCGAGGTCGAAA AGGCTTCGCCACAAACGGCGTCTCCTCAGGAGCCGCCGGCGACGGTAGCA GCGGCAGCAGGGAAGGCTGCTGCTGCCCCCGCTGCCGCCCCCACGGAGAC GGAAACAGCGGTGGCGGCGGCGCCAGCAGCACCAACAGCACCAGCACAAG CTGCGCCGACGGAGACATCAAGCATGGACGTCGACGGTGCAGAGGAGGGG AAAGCTGCGGAGGCGCCGGCGCCGGCGGCCGACGCTGGGAACGGCGAAGC CGAACAAGAACCGCCAGCAACATCAGAAGCGGTGGGGGGGGGTGAGGGGA AGGAGGAGACAAGTATCGCCAAGGGGGGGGCAGACGGCGGCGGTGATGGT GATGCTATGGTTGATGACGGGGGGGGAGAAGAAGCGGCCGCAGAGGCAGC GGAGGAGACGGCCACGGAGGCACCGGCGGAAACGGGTGTGGGGGCGGGGG ACATGGAGCAGGAGGAGGGAGGAGAGCCCAAGCTTTCCGAAGCTGAAATC AAGTCGTATAAGGTGGGCGCACGGATGTACAGCAGTCTGTCTGCCGACTT GTCTGCCAAAACACCCAAAATATATATATAGCAAGACCCACCCGTATTTT TCCCCGCAACCAAACGGTAGCAGGCGACTGGTGATGCCGATGCACTCTGT GCAAGAGTGCAAGAGTCCACGCCGGACCAGAAATGAAGACGACCAATACA CCACCCGTCCTCAGTCTTTAGCTTAAGAACGGAATGCCCTCGACCAATCC GAGAGGACTGGCAGATGGGTCGGTCAGGGGGTCAATGCATGCCTTCTCGC GTGTGTTAGGACGCCGCCCTGTTGACGTGTCTTGCTTCTTGCTAGACGCC AAATCGGCGGGTCTTCATTCTGTACCAGGTATGTCTAACCTTGGGCATGT CTGGTGCAAGAGACAATAACTTCAGCGTTGCAGAAGATGTTTTTGGTGTT TTGGTGCTGTTAGAAAAAAACACCTCCTGTATGTTTTGTGAGTGGGACCA AGAAGCGCGGTGTATTCTGCTGGCATCACGGGGTGTTTTCGTGCGTGCGG TCGATGACATTGTGTCGACGATTTGGTAACCATGGCTTGTGGGTGTATTC TATACCCCTTTCCGTGCTTGGTGTGCATCGGAGCGTGCGTCAAGGGGTTG GAAGCGGACTTGACAAATCAATATCTCGTTGATTTTGAACCGATGTAAAC ATACCTATGCATACGGACAAAGAACCGTTAATCGTCTCGTTTTTCGTCCC GCGCAAGAAGCAAACACATCTCTACCGGTCATGGTCTCATCGTGCTAATT AGTTGGAAGCAATTGCCCTACAGTGTGGCACTATTGTACGTATACACCCG ATCATCAGACGAGCCCTGCACATATTTAAACGAGCGTTGAGAGGTTGAGA GCCACGAGTACTAGGTATGCGTTCATCCATCGCCTATTCCTTGGTGGAGG CACACGGGCTCCTCACGCCTCCTCTCACCCGTAACCGCTGTGAATAAACG ACGCGTCCCGCCGGAGGGCAGGTGGCGCAGCTCAAGAAGGCGCTCGTGGA GCGCGGCCTTCCCACAAATGGGCTCAAGGCCGACCTTGCCGCGAGGCTGA TGGAGGCGATGGGGTACTGATGGCGGGCAATGGAAGGTTTTGGAGGGATG CCGACGGGTGGGAAGGCACATCTGTAGAGAGTGTTGCCTCTGGTCGCTTG CGGGTCGTCGACGGGGTTTCCCTACTTGGGCGACGAGAATTAAGGATAGG AAGACGATGTGCCCAAAAAAATTACCAGATTTTGTGGCGTTGTGATGCTG GTTGGTGGCGTGCGGAGGTGTTACTCTTCGAAGGGATGTAGAGCGTAGTC CTGAGTAAGTTGGACCAGACAGGGGTGCTAACAACGCTGCGATTGTATCA TGACACCATCAAGTGCCCAGAACAAGTCAGATGTACTGCTGTAGTGTCCA TCCGTCCCCATTGCAGTGCAGTCCCGTGGTGGTGTGTGAGCGACCTCTTC GCATCCTCTCCTCTGTCGTTAGTTTCCATTGAATACCGTTGTGGTCTTGG GGCGATCTCCCCTTCTCCGGCCAGCCTCACCACGTTGTGTGTGTGATGGT GCCTGATTTGCCGGCCTCTTCTTTTCGCTCGCGCGTCTTCCAAATATGAG ACTGGTATAGTTTTTCGATGGGGGATCGATGTCAACGTGAACCATACTGA CGGCCACGTCGAGGAGAAAGAAGAGGACTTGACGACTTCTTTGCCCCGAC CCTAGCACTTGCGATGCCGTACTCCGTTTTTACTTGTTGTACCGATACGC GTTTTGCGGATCGATTCTCGCTACAACTGTGAATTGCATGTGTGTTGAGA CGCTCAAGAGGGCTAAGCTTGACTAACAGAGTGAGAGAAACTCGCGGGTT CGCTAGACCAATACCGCATCGCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7846:2069..6791-

>mRNA_E_fasciculatus_S2_contig7846.16014.1 ID=mRNA_E_fasciculatus_S2_contig7846.16014.1|Name=mRNA_E_fasciculatus_S2_contig7846.16014.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1281bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7846:2069..6791- (Ectocarpus fasciculatus EfasUO2)
ATGGACTTCTCGGACAACGAGATCAAGAAGCTAGACAACTTCCCCCGGTA
CAAGCGCCTGTCGTCCCTCCTCCTCTGCAACAACCACGTCTCCAAGATCT
CGGAAGACCTCGGCACTGCTCTACCGAACCTCTCCTGCCTGATTCTCACC
AACAACAAGCTCTCCACGCTAGCGGAACTCAAGGGCCTTGGCACCTGTAC
CAAGCTGACGATGCTATCCTTGCTGCACAACGAGGTGGTAAACAAGCAGT
ACTACCGACTGTACATGATCAACCTCGTACCCAGCCTCAAGCAGCTGGAC
TTCCAGAAGGTCACGGTCAAGGAGCGAGAGTCGGCAGCCCGATTGGCCAG
GTCACAGGCAGGGCAGGCGATGATACAGGACGTGGCGCAGCAGGCGGAGA
AGGCTAAAACCTTCACGCCGGGAGCGCCAGCGGCGGACGAACAGAAGCTG
ACAGACGAGCACAGAGCCATCTACGCCGACCGCATCGCGAAGGCCACCAC
GGTAGAGGAGATCGAAATGCTCTCCAAGAAGATCCAAGCTGGCATTATCC
CGTCAGCGAACTACAAGCAGGGCGGCGGTGCGCCGGCGGCGAACGGGGCT
GCTGCGCCAGCCGCCGCCGCGGCGGCGGCTCCGGAAAAGCCTTCGGCCGC
CGAAACAACCGAGGTCGAAAAGGCTTCGCCACAAACGGCGTCTCCTCAGG
AGCCGCCGGCGACGGTAGCAGCGGCAGCAGGGAAGGCTGCTGCTGCCCCC
GCTGCCGCCCCCACGGAGACGGAAACAGCGGTGGCGGCGGCGCCAGCAGC
ACCAACAGCACCAGCACAAGCTGCGCCGACGGAGACATCAAGCATGGACG
TCGACGGTGCAGAGGAGGGGAAAGCTGCGGAGGCGCCGGCGCCGGCGGCC
GACGCTGGGAACGGCGAAGCCGAACAAGAACCGCCAGCAACATCAGAAGC
GGTGGGGGGGGGTGAGGGGAAGGAGGAGACAAGTATCGCCAAGGGGGGGG
CAGACGGCGGCGGTGATGGTGATGCTATGGTTGATGACGGGGGGGGAGAA
GAAGCGGCCGCAGAGGCAGCGGAGGAGACGGCCACGGAGGCACCGGCGGA
AACGGGTGTGGGGGCGGGGGACATGGAGCAGGAGGAGGGAGGAGAGCCCA
AGCTTTCCGAAGCTGAAATCAAGTCGTATAAGGTGGCGCAGCTCAAGAAG
GCGCTCGTGGAGCGCGGCCTTCCCACAAATGGGCTCAAGGCCGACCTTGC
CGCGAGGCTGATGGAGGCGATGGGGTACTGA
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