mRNA_E_fasciculatus_S2_contig7846.16014.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: U2 (small nuclear ribonucleoprotein A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC4_ECTSI) HSP 1 Score: 381 bits (978), Expect = 4.940e-122 Identity = 328/406 (80.79%), Postives = 331/406 (81.53%), Query Frame = 2
Query: 2 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGGAPAANXXXXXXXXXXXXXXXPSAAETTEVEKASPQTASPQEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMDVDGAEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAGDMEQEEGGEPKLSEAEIKSYKVAQL 1219
VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINL+PSLKQLDFQKVTVKERESA RLARSQAGQAMIQDVAQQAEKAKTFTPGAPAA+EQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG XXXXXXXXXXXXXXX TEVE ASPQTAS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SMDVDGAEEG XXXXXXXXXXXXXXXXXXXXXXXXXXXX G GDMEQEEGG PKLSEAEIKSYK +L
Sbjct: 38 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLIPSLKQLDFQKVTVKERESAVRLARSQAGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGXXXXXXXXXXXXXXXXXXXXXXXXX-XTEVEMASPQTASXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDVDGAEEGKTAEAPVPGADAGNGEAEEEPPATSEAGRGGEGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAETAEETATEAPAETGEGEGDMEQEEGGGPKLSEAEIKSYKGGKL 440
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: SAP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q9_9PHAE) HSP 1 Score: 292 bits (747), Expect = 1.620e-89 Identity = 270/374 (72.19%), Postives = 276/374 (73.80%), Query Frame = 2
Query: 182 KLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGGAPAANXXXXXXXXXXXXXXXPSAAETTEVEKASPQTASPQEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMDVDGAEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAGDMEQEEGGEPKLSEAEIKSYKVAQLKKALVERGLPTNGLKADLAARLMEAMGY 1303
+LSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVK AGQAMIQDVAQQAEKAKTFTPGAPAA+EQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG XXXXXXXXXXXXXXX TTEVE ASPQTASP + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SMDVDGAEEG XXXXXXXXXXXXX G GDMEQE+GG PKLSEA+IKSYKV QLKKALVERGLPTNGLKADL+ARLMEAMGY
Sbjct: 2 QLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVK------------AGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGXXXXXXXXXXXXXXXXXXXXXXXX--TTEVEMASPQTASPHD--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDVDGAEEGKTAEAPEASSAKGGADGRGGGDARVGDEGGEEXXXXXXXXXXXXXPAETGE-----------------------------GEGDMEQEDGGGPKLSEADIKSYKVTQLKKALVERGLPTNGLKADLSARLMEAMGY 330
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: Leucine-rich (repeat-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE59_9STRA) HSP 1 Score: 188 bits (478), Expect = 8.640e-49 Identity = 110/205 (53.66%), Postives = 139/205 (67.80%), Query Frame = 2
Query: 2 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGGAPAA 616
VTQDQFD +DFSDNEI+KLDNFPR RL++LLL NN +++I +D+G LPNLSCL+LTNN +S L+EL LG C +LTMLSLL N V Q+YRLY+I+ +PSLK LDF KV +ER A RL +S AG+AM +D+A QA KTF PG A LT R I +A T EEI+ L + ++AGI P+ + A AA
Sbjct: 38 VTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQA---KTFVPGGAA--RAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPAERKELDAAAAAA 237
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9L1_9STRA) HSP 1 Score: 168 bits (425), Expect = 1.660e-43 Identity = 98/200 (49.00%), Postives = 133/200 (66.50%), Query Frame = 2
Query: 2 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGA-------PAADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 580
VTQDQFD +DF+DNEIK++DNFP +KRLS+LLL NNHV+++S L LPNL CL L+E+ L CTKLTMLS ++N ++ +Q+YRLY+I +P LK LDF KV ERE AA+L RS AG+ M QDV ++ KTFTPG P A+ LT E + IA A+T EE++ + ++++AG+IP+
Sbjct: 39 VTQDQFDVLDFTDNEIKRVDNFPTFKRLSTLLLSNNHVTRLSPTLSEQLPNLDCLXXXXXXXXNLSEVDNLIGCTKLTMLSFVNNPIIRRQHYRLYVIAKLPQLKALDFVKVKAIEREEAAKLFRSAAGRLMQQDVEAES---KTFTPGEDIPSTTNPMAN---LTAEQKDQVRAVIAAASTPEEVDRIERQLKAGVIPT 232
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: U2 (small nuclear ribonucleoprotein A'-like n=2 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=A0A3Q1GBX3_9TELE) HSP 1 Score: 165 bits (417), Expect = 3.040e-43 Identity = 92/202 (45.54%), Postives = 134/202 (66.34%), Query Frame = 2
Query: 2 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 598
T DQFD +DFSDNEI+KLD FP +RL +LL+ NN + +I E+L +LP+L+ L+LTNN + L +L L T LT+LSLL N V NK++YRLY+IN +P ++ LDFQKV +KER+ A ++ + + G + +D+A+ + KTFTPG A E+K T +A + IA A+++ E+E L +QAG IP + +QG
Sbjct: 16 ATLDQFDTVDFSDNEIRKLDGFPLLRRLKTLLMNNNRICRIGENLEQSLPSLTELVLTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIAR---RTKTFTPGVAAQPEKKRTGPSQADVDAIKNAIANASSLAEVERLKGMLQAGQIPGRDLRQG 214
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: Small (nuclear ribonucleoprotein polypeptide A' n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3N132_9LABR) HSP 1 Score: 166 bits (419), Expect = 3.130e-43 Identity = 94/202 (46.53%), Postives = 133/202 (65.84%), Query Frame = 2
Query: 2 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 598
T DQFD +DFSDNEI+KLD FP KRL +LL+ NN + ++ E+L +LP L+ LILTNN + L +L L T LT+LSLL N V NK++YRLYMIN +P ++ LDFQKV KER+ A ++ + + G + +D+A+ + KTFTPG PA E+K T +A + IA A+++ E+E L +QAG IP + ++G
Sbjct: 39 ATLDQFDTVDFSDNEIRKLDGFPLLKRLKTLLMNNNRICRVGENLEQSLPCLTELILTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYMINKIPQIRVLDFQKVKQKERQEAEKMFKGKRGAQLAKDIAK---RTKTFTPGVPAQLEKKKTGPSQADVEAIKNAIANASSLAEVERLKGMLQAGQIPGRDLREG 237
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: Small (nuclear ribonucleoprotein polypeptide A' n=6 Tax=Euacanthomorphacea TaxID=123369 RepID=A0A3Q1EK11_9TELE) HSP 1 Score: 165 bits (417), Expect = 5.970e-43 Identity = 92/202 (45.54%), Postives = 134/202 (66.34%), Query Frame = 2
Query: 2 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 598
T DQFD +DFSDNEI+KLD FP +RL +LL+ NN + +I E+L +LP+L+ L+LTNN + L +L L T LT+LSLL N V NK++YRLY+IN +P ++ LDFQKV +KER+ A ++ + + G + +D+A+ + KTFTPG A E+K T +A + IA A+++ E+E L +QAG IP + +QG
Sbjct: 39 ATLDQFDTVDFSDNEIRKLDGFPLLRRLKTLLMNNNRICRIGENLEQSLPSLTELVLTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIAR---RTKTFTPGVAAQPEKKRTGPSQADVDAIKNAIANASSLAEVERLKGMLQAGQIPGRDLRQG 237
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: Small (nuclear ribonucleoprotein polypeptide A' [Latimeria chalumnae] n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2V8V0_LEPSM) HSP 1 Score: 165 bits (417), Expect = 9.180e-43 Identity = 93/199 (46.73%), Postives = 136/199 (68.34%), Query Frame = 2
Query: 2 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYADRI-------AKATTVEEIEMLSKKIQAGIIP 577
T DQFD +DFSDNEI++LDNFP RL +L NN + +I +++ +LPNL+ LILTNN L LA+L+ L LT LSL+ N V++K YRLY+I+ +P+L+ LDF+KV +KERE A +S+ G+ +++++ ++A AKTFTPGAP ADE K ++ + D+I A+ATT+EEIE L++ ++ G IP
Sbjct: 39 ATLDQFDCIDFSDNEIRQLDNFPFLPRLKTLFFNNNRIIRIGDNINESLPNLNSLILTNNSLQELADLERLAKIKSLTNLSLMSNPVISKPDYRLYLIHKLPNLRMLDFRKVKLKEREEAKAKFKSEEGKKVLKEIKKRA--AKTFTPGAPLADESKKENQPHGLNPDQIRNIKAAIARATTLEEIERLNQMLRTGQIP 235
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: U2 (small nuclear ribonucleoprotein A n=1 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2IG20_ACAPC) HSP 1 Score: 164 bits (416), Expect = 1.420e-42 Identity = 99/207 (47.83%), Postives = 137/207 (66.18%), Query Frame = 2
Query: 5 TQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAP--------AADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG 601
T DQFD +D SDNE++KLD FP+ RL +LLL NN + +++E L LPNL+ L++TNN L LA+L+ L T KL M+SLLHN VV K+ YRLY+I+ PSLK LDF+K+ +KERE+A L +++ G+ ++D+ QA KAKTF PGAP AA+ LT E IAKA ++EEIE L++ ++ G +P + GG
Sbjct: 40 TLDQFDCIDLSDNEVRKLDGFPQLNRLKTLLLNNNRIVRVAEGLELNLPNLNTLVMTNNSLQELADLEPLTTMKKLEMMSLLHNPVVTKRNYRLYVIHKFPSLKVLDFKKIKMKEREAAKALFKTKEGKTQLKDI--QA-KAKTFVPGAPLPEATNNKAANPAGLTPEQVKNIKTMIAKAKSLEEIERLNQMLRTGKMPGEASENGG 243
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKJ1_HETAK) HSP 1 Score: 168 bits (426), Expect = 2.660e-42 Identity = 97/198 (48.99%), Postives = 135/198 (68.18%), Query Frame = 2
Query: 2 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAQQAEKAKTFTPGAPAADEQK-LTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYK 592
TQD FD +DFSDNEIKKL+NFPR +RL++LL NNH+SKI+E + +PNLS L ++ LAEL L KLT+LSLL N VV +Q+YRLY+I+ P+LK LDF+KV +ER+ AARL +S+AGQ M DV ++ KTF G E+K LT++ + + + I ATT EE++ L ++++AGI+P+ K
Sbjct: 38 ATQDMFDTIDFSDNEIKKLENFPRMERLTTLLFNNNHISKIAESIKDQVPNLSTLXXXXXRIQHLAELDSLQGLRKLTLLSLLENPVVRRQHYRLYVIHRCPALKYLDFRKVKQQERQEAARLFKSKAGQQMQDDVQKEI---KTFQAGEKQEREKKRLTEDQKNLIREAIKNATTPEEVDKLERQLKAGIMPNLAQK 232 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7846.16014.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7846.16014.1 >prot_E_fasciculatus_S2_contig7846.16014.1 ID=prot_E_fasciculatus_S2_contig7846.16014.1|Name=mRNA_E_fasciculatus_S2_contig7846.16014.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=427bp MDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTback to top mRNA from alignment at E_fasciculatus_S2_contig7846:2069..6791- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7846.16014.1 ID=mRNA_E_fasciculatus_S2_contig7846.16014.1|Name=mRNA_E_fasciculatus_S2_contig7846.16014.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4723bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7846:2069..6791- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7846:2069..6791- >mRNA_E_fasciculatus_S2_contig7846.16014.1 ID=mRNA_E_fasciculatus_S2_contig7846.16014.1|Name=mRNA_E_fasciculatus_S2_contig7846.16014.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1281bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7846:2069..6791- (Ectocarpus fasciculatus EfasUO2)back to top |