mRNA_E_fasciculatus_S2_contig7842.16012.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7842.16012.1 vs.
Match: FtsJ (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA3_ECTSI) HSP 1 Score: 486 bits (1250), Expect = 2.080e-168 Identity = 284/361 (78.67%), Postives = 293/361 (81.16%), Query Frame = 1
Query: 1 SIIDNNNEDTAVCRAYYKIKEVTSRADLSFGEDWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELDPAVLALPNVVHVQKLIEAARETLIGLLAGDAPAHERQSRGGDG-------------------SSTPGALSLASRLAPGGPVAPAGSADTADEASPAGANGRPIAPGKSGGAELVVSDMNAEPTVVANVLLSAMSAGLVRPGALLVATFKDFCGRHKRMKDEVALAVERLRVGTAAVGGGTASGVGEGEGVPAAAPCGAGGPDVAAGPPGDDADGVCEAENGLSHGGTPSEGRVAASSEPCVMHAGVACEKE--EGWWRLEEIETMKLLAGGRAEVTIVARVARGTGVANGGAGGR 1020
SIIDNNNEDTAVCRAYYKIKEVTSRADLSFGEDWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELD AVLALPNVVHVQKLIEAA+ TL+ LLA DAPAHER+SRGG+G S TP A SL SRL PGGP+A AGSADTA EAS GAN RP APGKS GAELVVSDMNAEP VVA+VLLSAMSAGL RPGALLVATFKDFCGR KRMKDEVALAVERLRVGT VGGG ASGVGEG+G PAAAPCG G P+ AG G+DADG EA NGLSH GTP EGRVA GVACEKE EGWWRLE IETMKLLAGGRAEVTIVARVA GTGVANGG GGR
Sbjct: 116 SIIDNNNEDTAVCRAYYKIKEVTSRADLSFGEDWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELDSAVLALPNVVHVQKLIEAAKGTLLDLLAEDAPAHERESRGGEGEERDDGGGRTHDGRLSGGGSFTPEASSLGSRLTPGGPIASAGSADTAGEASSMGANDRPTAPGKSQGAELVVSDMNAEPAVVADVLLSAMSAGLARPGALLVATFKDFCGRRKRMKDEVALAVERLRVGTFVVGGG-ASGVGEGDGGPAAAPCGGGPPN--AGTSGNDADGGLEAGNGLSHAGTPPEGRVA----------GVACEKEGAEGWWRLEGIETMKLLAGGRAEVTIVARVAHGTGVANGGDGGR 463
BLAST of mRNA_E_fasciculatus_S2_contig7842.16012.1 vs.
Match: FtsJ (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK0_9PHAE) HSP 1 Score: 380 bits (975), Expect = 1.820e-128 Identity = 235/328 (71.65%), Postives = 241/328 (73.48%), Query Frame = 1
Query: 103 TAIDIGAAPGGWTSFLASKCRRVLSVDPAELDPAVLALPNVVHVQKLIEAARETLIGLLAGDAPAHERQS-------------------RGGDGSSTPGALSLASRLAPGGPVAPAGSADTADEASPAGANGRPIAPGKSGGAELVVSDMNAEPTVVANVLLSAMSAGLVRPGALLVATFKDFCGRHKRMKDEVALAVERLRVGTAAVGGGTASGVGEGEGVPAAAPCGAGGPDVAAGPPGDDADGVCEAENGLSHGGTPSEGRVAASSEPCVMHAGVACEKE----EGWWRLEEIETMKLLAGGRAEVTIVARVARGTGVANGGAGG 1017
T IDIGAAPGGWTSFLASKCRRVLSVDPAELDPAVLALPNVVHVQ+LIEAA TL LLA DAP HER+ G GSSTP SLASRL PGGPVA AGSADTADEAS GANGRP APGK GGAELVVSDMNAEP VVA+VLLSAMSAGL RPGALLVATFKDFCGR KRMKDEVA+AVERLRVGTA V GG ASGVG CG G P+ G+DAD E NGLSH GTP EGRVA GVACEKE EGWWRLEEIETMKLLAGGRAEVTIVARVA GT VANGG GG
Sbjct: 27 TQIDIGAAPGGWTSFLASKCRRVLSVDPAELDPAVLALPNVVHVQQLIEAAEGTLHELLAEDAPTHERECGCGEGEERDDGGGRTHDGRNSGGGSSTPEQSSLASRLTPGGPVASAGSADTADEASSMGANGRPAAPGKRGGAELVVSDMNAEPAVVADVLLSAMSAGLARPGALLVATFKDFCGRRKRMKDEVAVAVERLRVGTAIVDGG-ASGVGXXXXXXXXXXCGGGPPNAETS--GNDADEGLEPGNGLSHAGTPPEGRVA----------GVACEKEGAGEEGWWRLEEIETMKLLAGGRAEVTIVARVAHGTEVANGGDGG 341
BLAST of mRNA_E_fasciculatus_S2_contig7842.16012.1 vs.
Match: Ribosomal (RNA large subunit methyltransferase J, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GJZ6_ACACA) HSP 1 Score: 78.6 bits (192), Expect = 1.760e-12 Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 34 VCRAYYKIKEVTSRAD---LSFGEDWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELDPAVLALPNVVHVQKLIEAARETL 267
V RAY+K+KEV +R D L+ WTAID+GAAPGGWT +L+ ++V+S+DP EL + PNVVH++K +E E L
Sbjct: 252 VSRAYHKMKEVFTRIDCLRLADTAQWTAIDVGAAPGGWTQYLSPLMKQVISIDPGEL--RIELPPNVVHLKKKVEDCMEEL 330
BLAST of mRNA_E_fasciculatus_S2_contig7842.16012.1 vs.
Match: Hypothetical (protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2L4_CHRCT) HSP 1 Score: 77.0 bits (188), Expect = 7.490e-12 Identity = 39/83 (46.99%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 34 VCRAYYKIKEVTSRADLSFGEDWTAIDIGAAPGGWTSFLASK-CRRVLSVDPAELDPAVLALPNVVHVQKLIEAARETLIGLL 279
VCRAYYK+KE+ SR ++F + AID+GA+PGGWTS+LA + C +++++DPAEL P V H+++ ++ A L GLL
Sbjct: 364 VCRAYYKLKELGSRELVAFSDCSVAIDVGASPGGWTSYLAERGCSKIIAIDPAELRQTEPPPPCVEHLRQKLQDA---LPGLL 443
BLAST of mRNA_E_fasciculatus_S2_contig7842.16012.1 vs.
Match: THUMP (domain-containing protein n=2 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A497KN40_9ARCH) HSP 1 Score: 75.9 bits (185), Expect = 1.160e-11 Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 1
Query: 40 RAYYKIKEVTSRADLSFGEDWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELDPAVLALPNVVHVQ 237
RA +KIKE L D+ +D+GAAPGGWT LAS V++VDPA+LDP+V LPNVVH++
Sbjct: 224 RAEHKIKEAIKAFKLEIKRDFRVLDVGAAPGGWTRVLASLADNVVAVDPADLDPSVKTLPNVVHLK 289
BLAST of mRNA_E_fasciculatus_S2_contig7842.16012.1 vs.
Match: THUMP (domain-containing protein n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7J4FJL1_9ARCH) HSP 1 Score: 74.3 bits (181), Expect = 2.970e-11 Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1
Query: 40 RAYYKIKEVTSRADLSFGEDWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELDPAVLALPNVVHVQ 237
RA +KIKE L D+ +D+GAAPGGWT LAS V++VDPA+LDP V LPNVVH++
Sbjct: 182 RAEHKIKEAIKAFKLEIKRDFRVLDLGAAPGGWTKVLASLADNVVAVDPADLDPFVEVLPNVVHLK 247
BLAST of mRNA_E_fasciculatus_S2_contig7842.16012.1 vs.
Match: 23S (rRNA (Cytidine2498-2'-O)-methyltransferase n=2 Tax=Glycomyces artemisiae TaxID=1076443 RepID=A0A2T0UPL3_9ACTN) HSP 1 Score: 74.3 bits (181), Expect = 3.030e-11 Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1
Query: 34 VCRAYYKIKEVTSRADLSFGEDWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELDPAVLALPNVVH 231
V RA +K++E+ L FG TA+D GAAPGGWT LA + R +VDP +LDPAVL P+VVH
Sbjct: 181 VSRAEFKLEELFKEHGLPFGHSGTALDYGAAPGGWTRILAERGFRTTAVDPGDLDPAVLKRPDVVH 246
BLAST of mRNA_E_fasciculatus_S2_contig7842.16012.1 vs.
Match: THUMP (domain-containing protein n=2 Tax=Candidatus Hydrothermarchaeota archaeon TaxID=2250275 RepID=A0A497J5Y0_9ARCH) HSP 1 Score: 73.6 bits (179), Expect = 5.020e-11 Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 19 NEDTAVCRAYYKIKEVTSRADLSFGEDWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELDPAVLALPNVVHVQK 240
+E + RA KI+E+ R F ++ T +DIGAAPGGW+ ++ + ++V++VDPAELD V + NVVH++K
Sbjct: 164 HEKRPISRAEQKIREIIKRYPFVFSKEKTVLDIGAAPGGWSREMSKRVKKVIAVDPAELDEEVREIKNVVHIKK 237
BLAST of mRNA_E_fasciculatus_S2_contig7842.16012.1 vs.
Match: Methyltransferase (domain-containing protein n=4 Tax=Paenibacillus TaxID=44249 RepID=A0A3S9V6S5_9BACL) HSP 1 Score: 73.6 bits (179), Expect = 5.940e-11 Identity = 32/79 (40.51%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 22 EDTAVCRAYYKIKEVTSRADLSFGEDWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELDPAVLALPNVVHVQKLIEAAR 258
E+ + RA +K+ E S D++F A+DIGAAPGGW+SFL + +V +VDPA++ P++LA P + H++K ++ +
Sbjct: 189 EEGQISRAKFKLLEAESVFDINFSAFHEALDIGAAPGGWSSFLLERGLKVTAVDPAKMHPSILASPQLTHIRKNADSVK 267
BLAST of mRNA_E_fasciculatus_S2_contig7842.16012.1 vs.
Match: Methyltransferase (domain-containing protein n=1 Tax=Bdellovibrionales bacterium TaxID=2053517 RepID=A0A849WUJ9_9PROT) HSP 1 Score: 72.8 bits (177), Expect = 6.530e-11 Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 1
Query: 22 EDTAVCRAYYKIKEVTSRADLSFGEDWTAIDIGAAPGGWTSFLASKCRRVLSVDPAELDPAVLALPNVVHVQKLIE---AARETLIGLL 279
E + RA +K+ E DL A+D+GAAPGGWT L+ + RV++VDPAELDP + PNV H++ +E RET +L
Sbjct: 129 EPNQISRAEFKLLEALETFDLQLPTTGVALDMGAAPGGWTRLLSERGLRVIAVDPAELDPRAESHPNVTHIRTTVENYLPTRETFDVIL 217 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7842.16012.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7842.16012.1 >prot_E_fasciculatus_S2_contig7842.16012.1 ID=prot_E_fasciculatus_S2_contig7842.16012.1|Name=mRNA_E_fasciculatus_S2_contig7842.16012.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=341bp SIIDNNNEDTAVCRAYYKIKEVTSRADLSFGEDWTAIDIGAAPGGWTSFLback to top mRNA from alignment at E_fasciculatus_S2_contig7842:5446..7081- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7842.16012.1 ID=mRNA_E_fasciculatus_S2_contig7842.16012.1|Name=mRNA_E_fasciculatus_S2_contig7842.16012.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1636bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7842:5446..7081- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7842:5446..7081- >mRNA_E_fasciculatus_S2_contig7842.16012.1 ID=mRNA_E_fasciculatus_S2_contig7842.16012.1|Name=mRNA_E_fasciculatus_S2_contig7842.16012.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1023bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7842:5446..7081- (Ectocarpus fasciculatus EfasUO2)back to top |