mRNA_E_fasciculatus_S2_contig7837.16006.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7837.16006.1
Unique NamemRNA_E_fasciculatus_S2_contig7837.16006.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7837.16006.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XWB3_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 9.530e-8
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 2 
Query:    5 KGYFEDRRPSSNMDPYVVTGMIVKTT 82
            KGYFEDRRP+SNMDPYVVTG I+KTT
Sbjct:   55 KGYFEDRRPASNMDPYVVTGRIIKTT 80
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BLAST of mRNA_E_fasciculatus_S2_contig7837.16006.1 vs.
Match: Glutamine (synthetase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7FPA6_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.310e-7
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 2 
Query:    2 QKGYFEDRRPSSNMDPYVVTGMIVK 76
            QKGYFEDRRPSSNMDPYVVTGMIVK
Sbjct:  335 QKGYFEDRRPSSNMDPYVVTGMIVK 359
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BLAST of mRNA_E_fasciculatus_S2_contig7837.16006.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6G0NJF0_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 3.140e-7
Identity = 22/26 (84.62%), Postives = 24/26 (92.31%), Query Frame = 2 
Query:    5 KGYFEDRRPSSNMDPYVVTGMIVKTT 82
            KGYFEDRRP+SNMDPYVVT  I+KTT
Sbjct:   15 KGYFEDRRPASNMDPYVVTARIIKTT 40
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BLAST of mRNA_E_fasciculatus_S2_contig7837.16006.1 vs.
Match: Gln_synt_b-grasp (domain-containing protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804LGB9_MAIZE)

HSP 1 Score: 54.3 bits (129), Expect = 3.380e-7
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    4 EGVLRGPQAFVQHGPLRGHRHDRQDHHLLD 93
            +G+LRGPQA VQHGPLR HRHDR+DHH ++
Sbjct:  344 QGLLRGPQAGVQHGPLRRHRHDRRDHHPVE 373
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BLAST of mRNA_E_fasciculatus_S2_contig7837.16006.1 vs.
Match: Glutamine (synthetase3 isoform 1 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6PGP9_MAIZE)

HSP 1 Score: 51.6 bits (122), Expect = 3.630e-7
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 2 
Query:    5 KGYFEDRRPSSNMDPYVVTGMIVKTT 82
            KGYFEDRRP+SNMDPYVVTGMI  TT
Sbjct:   67 KGYFEDRRPASNMDPYVVTGMIADTT 92
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BLAST of mRNA_E_fasciculatus_S2_contig7837.16006.1 vs.
Match: Glutamine (synthetase (Fragment) n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q42073_ARATH)

HSP 1 Score: 50.1 bits (118), Expect = 4.960e-7
Identity = 22/26 (84.62%), Postives = 24/26 (92.31%), Query Frame = 2 
Query:    5 KGYFEDRRPSSNMDPYVVTGMIVKTT 82
            KGYFEDRRP+SNMDPYVVT MI +TT
Sbjct:   22 KGYFEDRRPASNMDPYVVTSMIAETT 47
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BLAST of mRNA_E_fasciculatus_S2_contig7837.16006.1 vs.
Match: Glutamine (synthetase n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8D6D4_9LAMI)

HSP 1 Score: 52.0 bits (123), Expect = 5.450e-7
Identity = 22/26 (84.62%), Postives = 25/26 (96.15%), Query Frame = 2 
Query:    5 KGYFEDRRPSSNMDPYVVTGMIVKTT 82
            KGYFEDRRP+SNMDPY+VTGMI +TT
Sbjct:  106 KGYFEDRRPASNMDPYIVTGMITETT 131
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BLAST of mRNA_E_fasciculatus_S2_contig7837.16006.1 vs.
Match: Glutamine (synthetase 2 cytoplasmic n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P6IKA6_9CRUS)

HSP 1 Score: 53.1 bits (126), Expect = 7.120e-7
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 2 
Query:    5 KGYFEDRRPSSNMDPYVVTGMIVKTT 82
            KGYFEDRRP+SNMDPYVVTG IVKTT
Sbjct:  226 KGYFEDRRPASNMDPYVVTGRIVKTT 251
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7837.16006.1 vs.
Match: Uncharacterized (protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9JJ65_ARUDO)

HSP 1 Score: 49.7 bits (117), Expect = 7.870e-7
Identity = 20/26 (76.92%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:    4 EGVLRGPQAFVQHGPLRGHRHDRQDH 81
            +G+LRGPQA +QHGPLR HRHDR+DH
Sbjct:   21 QGLLRGPQAGLQHGPLRRHRHDRRDH 46
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7837.16006.1 vs.
Match: Glutamine (synthetase6 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6JTN3_MAIZE)

HSP 1 Score: 52.4 bits (124), Expect = 8.280e-7
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 2 
Query:    5 KGYFEDRRPSSNMDPYVVTGMIVKTT 82
            KGYFEDRRP+SNMDPYVVTGMI +TT
Sbjct:  158 KGYFEDRRPASNMDPYVVTGMIAETT 183
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7837.16006.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized9.530e-888.46protein (Fragment) n=1 Tax=Nothophytophthora sp. C... [more]
Glutamine1.310e-7100.00synthetase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7F... [more]
Uncharacterized3.140e-784.62protein (Fragment) n=2 Tax=Phytophthora TaxID=4783... [more]
Gln_synt_b-grasp3.380e-773.33domain-containing protein n=2 Tax=Zea mays TaxID=4... [more]
Glutamine3.630e-788.46synthetase3 isoform 1 n=1 Tax=Zea mays TaxID=4577 ... [more]
Glutamine4.960e-784.62synthetase (Fragment) n=1 Tax=Arabidopsis thaliana... [more]
Glutamine5.450e-784.62synthetase n=1 Tax=Genlisea aurea TaxID=192259 Rep... [more]
Glutamine7.120e-792.31synthetase 2 cytoplasmic n=1 Tax=Daphnia magna Tax... [more]
Uncharacterized7.870e-776.92protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A... [more]
Glutamine8.280e-788.46synthetase6 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7837contigE_fasciculatus_S2_contig7837:74..762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size120
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842445.0894208-CDS-E_fasciculatus_S2_contig7837:73..1491696842445.0894208-CDS-E_fasciculatus_S2_contig7837:73..149Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7837 74..149 +
1696842445.0986135-CDS-E_fasciculatus_S2_contig7837:684..7281696842445.0986135-CDS-E_fasciculatus_S2_contig7837:684..728Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7837 685..728 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842445.107309-UTR-E_fasciculatus_S2_contig7837:728..7621696842445.107309-UTR-E_fasciculatus_S2_contig7837:728..762Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7837 729..762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7837.16006.1prot_E_fasciculatus_S2_contig7837.16006.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7837 74..728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7837.16006.1

>prot_E_fasciculatus_S2_contig7837.16006.1 ID=prot_E_fasciculatus_S2_contig7837.16006.1|Name=mRNA_E_fasciculatus_S2_contig7837.16006.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=40bp
AEGVLRGPQAFVQHGPLRGHRHDRQDHHLLDVCNGEDEF*
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mRNA from alignment at E_fasciculatus_S2_contig7837:74..762+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7837.16006.1 ID=mRNA_E_fasciculatus_S2_contig7837.16006.1|Name=mRNA_E_fasciculatus_S2_contig7837.16006.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=689bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7837:74..762+ (Ectocarpus fasciculatus EfasUO2)
GCAGAAGGGGTACTTCGAGGACCGCAGGCCTTCGTCCAACATGGACCCCT
ACGTGGTCACCGGCATGATCGTCAAGGTAGGTTCATGGCCCCGGCGGGAT
TGGGAGTAATCATTGCCGGCTCACGTGGGTCGTTTGGCCGTTTCACCATG
TGTCGCGTGAGAGTTGCTGCTTTCATCTAGACCCGAGCGCTGTTGACCGA
CTCGCGCTGCAGAGAGTTGCGCTCATCATTCTGCATGCGGTGATCAATCT
GCCAGGCCCGTTGGCATCACAACGAATTGGGTGCTGCGAACAATGTGCCG
CATGATGGCACTCCTCGAGGTATCTCGCCGCTTCGGGACTTCCAACTGAC
GTACATATGGCAGAGGGTTATGCAACGTCTTCCACAAGCAAACGAATGGA
AAAATCGTTTTTTTTGCTGCTGTGGTATTGGTGAAAGTGTGTCAAAAATA
TCGTTGGGGCGAGACACATTTCCATCCGCGTGGTGTCAATCGACGCCGGC
GAATGAATCAACGCACAACCATCCTTCTCTCTCTCTCTCGGACGACAATC
GAGTAACCGTTCCTACCTCCCGCCCCTTCCGTCTGCTGCTGTTTTGCGTG
ACCGTTAACAGACCACCACCTCCTAGACGTCTGTAACGGCGAGGACGAAT
TTTGAGGGAATTTGTAGGGTCCTTCAGGCCAATTCTCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7837:74..762+

>mRNA_E_fasciculatus_S2_contig7837.16006.1 ID=mRNA_E_fasciculatus_S2_contig7837.16006.1|Name=mRNA_E_fasciculatus_S2_contig7837.16006.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=120bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7837:74..762+ (Ectocarpus fasciculatus EfasUO2)
GCAGAAGGGGTACTTCGAGGACCGCAGGCCTTCGTCCAACATGGACCCCT
ACGTGGTCACCGGCATGATCGTCAAGACCACCACCTCCTAGACGTCTGTA
ACGGCGAGGACGAATTTTGA
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