mRNA_E_fasciculatus_S2_contig7833.16005.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7833.16005.1
Unique NamemRNA_E_fasciculatus_S2_contig7833.16005.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7833.16005.1 vs.
Match: Inositol-1-monophosphatase (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ4_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.120e-18
Identity = 55/72 (76.39%), Postives = 59/72 (81.94%), Query Frame = 2 
Query:   74 MKSATAFALALVSLPCGTAF--------NSAMQRYPTKPQPTRQAL-SRVASQRAPDTAAEGVVPDSQTLSE 262
            MKSATAF +AL+SLP GTAF        +SAM+RYPTK QPTR AL SRVASQRAPDTAAEGVVPDSQTLSE
Sbjct:    1 MKSATAFTVALLSLPGGTAFVLSSSRSDHSAMRRYPTKSQPTRHALLSRVASQRAPDTAAEGVVPDSQTLSE 72
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7833.16005.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Inositol-1-monophosphatase1.120e-1876.39n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ4_ECTSI[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7833contigE_fasciculatus_S2_contig7833:3549..3810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score92.4
Seed ortholog evalue7.9e-17
Seed eggNOG ortholog2880.D7FKJ4
Model size264
KEGG rclassRC00078
KEGG koko:K01092
KEGG ReactionR01185,R01186,R01187
KEGG Pathwayko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070
KEGG ModuleM00131
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.Inositol-1-monophosphatase
EggNOG OGsCOG0483@1,KOG2951@2759
EC3.1.3.25
Cds size189
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842445.052958-UTR-E_fasciculatus_S2_contig7833:3548..36211696842445.052958-UTR-E_fasciculatus_S2_contig7833:3548..3621Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7833 3549..3621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842445.064538-CDS-E_fasciculatus_S2_contig7833:3621..38101696842445.064538-CDS-E_fasciculatus_S2_contig7833:3621..3810Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7833 3622..3810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7833.16005.1prot_E_fasciculatus_S2_contig7833.16005.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7833 3622..3810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7833.16005.1

>prot_E_fasciculatus_S2_contig7833.16005.1 ID=prot_E_fasciculatus_S2_contig7833.16005.1|Name=mRNA_E_fasciculatus_S2_contig7833.16005.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=63bp
MKSATAFALALVSLPCGTAFNSAMQRYPTKPQPTRQALSRVASQRAPDTA
AEGVVPDSQTLSE
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mRNA from alignment at E_fasciculatus_S2_contig7833:3549..3810+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7833.16005.1 ID=mRNA_E_fasciculatus_S2_contig7833.16005.1|Name=mRNA_E_fasciculatus_S2_contig7833.16005.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=262bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7833:3549..3810+ (Ectocarpus fasciculatus EfasUO2)
GCAGCAGACGCACACGCATCGGTCGCAGCTCCAGTAGGAAAGTCTTCGTG
CTCGTCGCAGCAGTAAGACCAGGATGAAGAGTGCGACCGCTTTCGCTCTG
GCACTCGTGAGCTTGCCATGCGGCACAGCCTTCAACTCCGCAATGCAGCG
GTACCCGACGAAGCCGCAACCTACACGCCAAGCGCTGTCGCGAGTTGCAT
CCCAGCGGGCACCCGATACTGCTGCGGAAGGAGTAGTACCGGACTCGCAG
ACACTTTCGGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7833:3549..3810+

>mRNA_E_fasciculatus_S2_contig7833.16005.1 ID=mRNA_E_fasciculatus_S2_contig7833.16005.1|Name=mRNA_E_fasciculatus_S2_contig7833.16005.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=189bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7833:3549..3810+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGAGTGCGACCGCTTTCGCTCTGGCACTCGTGAGCTTGCCATGCGG
CACAGCCTTCAACTCCGCAATGCAGCGGTACCCGACGAAGCCGCAACCTA
CACGCCAAGCGCTGTCGCGAGTTGCATCCCAGCGGGCACCCGATACTGCT
GCGGAAGGAGTAGTACCGGACTCGCAGACACTTTCGGAG
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