mRNA_E_fasciculatus_S2_contig7828.15997.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig7828.15997.1
Unique Name	mRNA_E_fasciculatus_S2_contig7828.15997.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig7828.15997.1 vs.
Match: von (Willebrand A domain containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN7_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.680e-17
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 3

Query:    3 NGIHGVESDNGDVCCAAGCGKCGGVGCSKFSPDLGADDCCVTEIRDFGDACSASGAAPCHVDG 191
            NG+ G+ES  G+VCC A CG+CGGVGC +F      +DCC+TEI D+G  CS  G APC++DG
Sbjct:  222 NGVPGMESAGGEVCCPADCGQCGGVGCGEFG-----EDCCITEIMDYGQPCSEIGTAPCYLDG 279

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BLAST of mRNA_E_fasciculatus_S2_contig7828.15997.1 vs.
Match: VWFA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.840e-16
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 3

Query:    3 NGIHGVESDNGDVCCAAGCGKCGGVGCSKFSPDLGADDCCVTEIRDFGDACSASGAAPCHVDG 191
            NG+ GVES  G+VCC A CG CGGVGC +      AD+CC TEI D+G  CS +G APC++DG
Sbjct:  676 NGVAGVESTMGEVCCPASCGHCGGVGCDERGA---ADECCTTEIMDYGQPCSVTGTAPCYLDG 735

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BLAST of mRNA_E_fasciculatus_S2_contig7828.15997.1 vs.
Match: Glycin-rich (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.910e-16
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 3

Query:    3 NGIHGVESDNGDVCCAAGCGKCGGVGCSKFSPDLGADDCCVTEIRDFGDACSASGAAPCHVDG 191
            NG+ GVES  G+VCC A CG CGGVGC +      AD+CC TEI D+G  CS +G APC++DG
Sbjct: 1179 NGVPGVESTMGEVCCPASCGHCGGVGCDERGA---ADECCTTEIMDYGQPCSVTGTAPCYLDG 1238

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BLAST of mRNA_E_fasciculatus_S2_contig7828.15997.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM4_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 5.370e-16
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = 3

Query:    3 NGIHGVESDNGDVCCAAGCGKCGGVGCSKFSPDLGADDCCVTEIRDFGDACSASGAAPCHVDGKQ 197
            NG++G+ES NG  CCA  CG CGGVGCS+     G+ DCC +EI + G+AC+A+GA+PC++DG +
Sbjct:  172 NGVYGIESSNGLACCALTCGSCGGVGCSRRPG--GSYDCCESEIVEEGEACAATGASPCYMDGDE 234

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BLAST of mRNA_E_fasciculatus_S2_contig7828.15997.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.690e-14
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 3

Query:    3 NGIHGVESDNGDVCCAAGCGKCGGVGCSKFSPDLGADDCCVTEIRDFGDACSASGAAPCHVDGK 194
            NGI G++S N   CC A CG CGG GC++    LG D+CC +EI DFG+ CS   AAPC VDG+
Sbjct: 1149 NGIPGIQSGN--ACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDGE 1210

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BLAST of mRNA_E_fasciculatus_S2_contig7828.15997.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.700e-14
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 3

Query:    3 NGIHGVESDNGDVCCAAGCGKCGGVGCSKFSPDLGADDCCVTEIRDFGDACSASGAAPCHVD 188
            NGI G+++ N   CC A CG CGG GC++    LGAD+CC++EI DFG+ CSA+  APC VD
Sbjct: 2886 NGIPGIQTGN--ACCLAECGGCGGTGCAQLGGGLGADNCCMSEIEDFGELCSATMTAPCIVD 2945

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BLAST of mRNA_E_fasciculatus_S2_contig7828.15997.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L879_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.600e-13
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 3

Query:    3 NGIHGVESDNGDVCCAAGCGKCGGVGCSKFSPDLGADD--CCVTEIRDFGDACSASGAAPCHVDGKQEIS 206
            NGI G+ES NG VCC A CG CGG  C+K + D G DD  CC ++I  FG +CS +  APC +D   + S
Sbjct:   54 NGIEGIESTNGGVCCPALCGLCGGAACTKAAVDAGLDDGDCCFSDIIRFGASCSENQMAPCIIDDASKAS 123

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BLAST of mRNA_E_fasciculatus_S2_contig7828.15997.1 vs.
Match: FirrV-1-B30 (n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.360e-12
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 3

Query:   33 GDVCCAAGCGKCGGVGCSKFSPDLGADDCCVTEIRDFGDACSASGAAPCHVD 188
            GD CC+AGCG+CGG GCS     L  DDCC ++I+D G+ CS +G APC +D
Sbjct:  640 GDFCCSAGCGECGGDGCSNRGEGLDGDDCCQSDIKDNGNMCSVTGKAPCMID 691

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BLAST of mRNA_E_fasciculatus_S2_contig7828.15997.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ60_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 9.550e-11
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 3

Query:    3 NGIHGVESDNGDVCCAAGCGKCGGVGCSKFSPDLGADD--CCVTEIRDFGDACSASGAAPCHVDGKQEIS 206
            NGI G+ES NGDVCC   CG CGG  C++ + + G DD  CC  +I   G +CS +  APC +D   + S
Sbjct:   54 NGIEGIESANGDVCCPTACGFCGGEACTEAAVNAGLDDGDCCFGDIIVSGASCSENQMAPCIIDDASQES 123

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BLAST of mRNA_E_fasciculatus_S2_contig7828.15997.1 vs.
Match: Mannuronan (C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 6.430e-10
Identity = 30/63 (47.62%), Postives = 34/63 (53.97%), Query Frame = 3

Query:    3 NGIHGVESDNGDVCCAAGCGKCGGVGCSKFSPDLGADDCCVTEIRDFGDACSASGAAPCHVDG 191
            NG  G+E      CC + CG CGG GCS     L  DDCC   I   G  CSA+G APC +DG
Sbjct:   23 NGFPGIEKSG--ACCVSDCGTCGGSGCSSRESGLTGDDCCTKNILKQGAPCSATGHAPCFLDG 83

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig7828.15997.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig7828.15997.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 13


Match Name	E-value	Identity	Description
von	2.680e-17	55.56	Willebrand A domain containing protein n=2 Tax=Ect...	[more]
VWFA	2.840e-16	57.14	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
Glycin-rich	2.910e-16	57.14	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	5.370e-16	53.85	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.690e-14	54.69	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
WSC	1.700e-14	54.84	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]
WSC	2.600e-13	50.00	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
FirrV-1-B30	2.360e-12	55.77	n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8...	[more]
WSC	9.550e-11	45.71	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]
Mannuronan	6.430e-10	47.62	C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig7828	contig	E_fasciculatus_S2_contig7828:3710..4253 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	1
Start	0
Model size	295
Hectar predicted targeting category	other localisation
Exons	2
Cds size	279

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842444.4497237-UTR-E_fasciculatus_S2_contig7828:3709..3725	1696842444.4497237-UTR-E_fasciculatus_S2_contig7828:3709..3725	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig7828 3710..3725 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842444.4593477-CDS-E_fasciculatus_S2_contig7828:3725..3874	1696842444.4593477-CDS-E_fasciculatus_S2_contig7828:3725..3874	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig7828 3726..3874 -
1696842444.468481-CDS-E_fasciculatus_S2_contig7828:4123..4253	1696842444.468481-CDS-E_fasciculatus_S2_contig7828:4123..4253	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig7828 4124..4253 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig7828.15997.1	prot_E_fasciculatus_S2_contig7828.15997.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig7828 3726..4253 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig7828:3710..4253-
coding sequence from alignment at E_fasciculatus_S2_contig7828:3710..4253-

protein sequence of mRNA_E_fasciculatus_S2_contig7828.15997.1

>prot_E_fasciculatus_S2_contig7828.15997.1 ID=prot_E_fasciculatus_S2_contig7828.15997.1|Name=mRNA_E_fasciculatus_S2_contig7828.15997.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=93bp
ATASTASSPTTETCAAPRGAASAAASGAPSSRQTWAPTTAASPRSVTLAT
RAPPPAPPRATWTVSKRYRFCCSRFSRCLPLCLVFIPSSCVT*

mRNA from alignment at E_fasciculatus_S2_contig7828:3710..4253-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig7828.15997.1 ID=mRNA_E_fasciculatus_S2_contig7828.15997.1|Name=mRNA_E_fasciculatus_S2_contig7828.15997.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=544bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7828:3710..4253- (Ectocarpus fasciculatus EfasUO2)
GCAACGGCATCCACGGCGTCGAGTCCGACAACGGAGACGTGTGCTGCGCC
GCGGGGTGCGGCAAGTGCGGCGGCGTCGGGTGCTCCAAGTTCTCGCCAGA
CCTGGGCGCCGACGACTGCTGCGTCACCGAGTGAGTCCGCTTGCCCGCAA
CAACGCGCCTGCCACTCAAATGGACTGCGAGTTCTGCTGTACATGCAGGG
CTGCAGTCTTCTCGGAGCTGACTCCCCGTCTCCGGTCTGCTTTGCGTTGT
GTGCGTACGACTCGTGGCAGCGCACGTACGGCGTGCTACAGAAAACCCGG
GCTAACCAAAACGCTCCTTTTCCCGTTTACCGTTTACCGCCCCCCGTTGA
TTTTCCCTTGGCTGATTCTGTGCATACAGGATCCGTGACTTTGGCGACGC
GTGCTCCGCCTCCGGCGCCGCCCCGTGCCACGTGGACGGTAAGCAAGAGA
TATCGTTTTTGTTGCTCGCGATTCAGCAGATGTTTGCCCCTGTGTTTAGT
ATTCATCCCCTCCTCCTGTGTGACCTAGGCTGGTTGTAGCTGTG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7828:3710..4253-

>mRNA_E_fasciculatus_S2_contig7828.15997.1 ID=mRNA_E_fasciculatus_S2_contig7828.15997.1|Name=mRNA_E_fasciculatus_S2_contig7828.15997.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=279bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7828:3710..4253- (Ectocarpus fasciculatus EfasUO2)
GCAACGGCATCCACGGCGTCGAGTCCGACAACGGAGACGTGTGCTGCGCC
GCGGGGTGCGGCAAGTGCGGCGGCGTCGGGTGCTCCAAGTTCTCGCCAGA
CCTGGGCGCCGACGACTGCTGCGTCACCGAGATCCGTGACTTTGGCGACG
CGTGCTCCGCCTCCGGCGCCGCCCCGTGCCACGTGGACGGTAAGCAAGAG
ATATCGTTTTTGTTGCTCGCGATTCAGCAGATGTTTGCCCCTGTGTTTAG
TATTCATCCCCTCCTCCTGTGTGACCTAG