mRNA_E_fasciculatus_S2_contig7823.15993.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7823.15993.1
Unique NamemRNA_E_fasciculatus_S2_contig7823.15993.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7823.15993.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTD8_ECTSI)

HSP 1 Score: 481 bits (1239), Expect = 3.420e-158
Identity = 243/250 (97.20%), Postives = 246/250 (98.40%), Query Frame = 1 
Query: 1855 LCLTLTQVLTGQAEMPAEGMMLMQNSATKLSCEVFVGNIPPETQAPTLQEYLGGALVQVNLCKAPNPILSIRMNARFAFLEMRTAEDATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMGGAGQGGAAEAEPAPTSTVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKKAFGSRTFDGKSVDATYFPEEQFASKSFAS 2604
            + LTLTQVLTGQAEMPAEGMMLMQNSATKLSCEVFVGNIPPETQAPTLQEYLGGALVQV LCK PNPILSIRMNARFAFLEMRTAE+ATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMGGAGQGGAAEAEPAPTSTVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKK FGSRTFDGKSVDATYFPEEQFA+KSFAS
Sbjct:   10 ISLTLTQVLTGQAEMPAEGMMLMQNSATKLSCEVFVGNIPPETQAPTLQEYLGGALVQVGLCKPPNPILSIRMNARFAFLEMRTAEEATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMGGAGQGGAAEAEPAPTSTVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKKGFGSRTFDGKSVDATYFPEEQFAAKSFAS 259
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BLAST of mRNA_E_fasciculatus_S2_contig7823.15993.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDH7_9PHAE)

HSP 1 Score: 473 bits (1217), Expect = 1.280e-150
Identity = 238/244 (97.54%), Postives = 240/244 (98.36%), Query Frame = 1 
Query: 1873 QVLTGQAEMPAEGMMLMQNSATKLSCEVFVGNIPPETQAPTLQEYLGGALVQVNLCKAPNPILSIRMNARFAFLEMRTAEDATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMGGAGQGGAAEAEPAPTSTVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKKAFGSRTFDGKSVDATYFPEEQFASKSFAS 2604
            QVLTGQAEMPAEGMMLMQNSATKLSCEVFVGNIPPETQAPTLQEYLGGALVQV LCK PNPILSIRMNARFAFLEMRTAEDATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGL+GGAGQGGA EAEPAPTSTVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKK FGSRTFDGKSVDATYFPEEQFA+KSFAS
Sbjct:  301 QVLTGQAEMPAEGMMLMQNSATKLSCEVFVGNIPPETQAPTLQEYLGGALVQVGLCKPPNPILSIRMNARFAFLEMRTAEDATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLVGGAGQGGATEAEPAPTSTVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKKGFGSRTFDGKSVDATYFPEEQFAAKSFAS 544
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7823.15993.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNU8_9STRA)

HSP 1 Score: 238 bits (606), Expect = 1.240e-67
Identity = 130/246 (52.85%), Postives = 170/246 (69.11%), Query Frame = 1 
Query: 1873 QVLTGQAE---MPAEGMMLMQNSATKLSCEVFVGNIPPETQAPTLQEYLGGALVQVNLCKAP-NPILSIRMNARFAFLEMRTAEDATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMGGAGQGGAAEAEPAPTSTVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKKAFGSRTFDGKSVDATYFPEEQFASKSF 2598
            Q+LTGQA            + +  TK + E+FVGN+P E QA  LQ++LG A+ QV L  AP NPI+ +RMNARF+FLE R+ E+AT AL L+ IPFG + L+  RP KY GPVTP K+WF+ LA+ +  ++G   +    +A   P STVVRIG+VV  +EL DDE+ +EV+EDM EECS+YG V GIEIP    A AGVG+VFV++ T+E+A KA+ AF SRTFDGK VDAT+F  + FA+K F
Sbjct:    6 QILTGQAPETIATVAAATALVDPNTKTNREIFVGNVPLEAQADALQQFLGSAMQQVGLTTAPGNPIVHVRMNARFSFLEFRSMEEATHALFLNNIPFGSSTLTFARPSKYAGPVTPTKSWFETLADSN--VLGNVME---QQAAGPPPSTVVRIGSVVNADELVDDESYQEVIEDMREECSRYGTVLGIEIPR--NAAAGVGYVFVQYSTVEEATKARNAFSSRTFDGKQVDATFFGHDDFAAKRF 244
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BLAST of mRNA_E_fasciculatus_S2_contig7823.15993.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I336_9STRA)

HSP 1 Score: 181 bits (460), Expect = 8.710e-46
Identity = 104/253 (41.11%), Postives = 155/253 (61.26%), Query Frame = 1 
Query: 1873 QVLTGQA---EMPAEGMMLMQNSATKLSCEVFVGNIPPETQAPTLQEYLGGALVQVNLCKAP-NPILSIRMNARFAFLEMRTAEDATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFG---LMGGAGQGGAAEAEPAP----TSTVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKKAFGSRTFDGKSVDATYFPEEQFASKSF 2598
            Q LTG A    +   G  L  ++  K++ E+F+GN  PE     L ++LG A+ QV L KAP NPI++ R + +FAF+E+RT ++A +ALNL+ IP+ GA L VGRP KY GP TPH  W D+LA+   G   L    G GGAA A  AP     + VV +  ++T ++L +D+  KE++ED TEEC ++G++  + IP    +G G   +F+++ T EDA +A  +   RTFDG+ V A Y+ E +FA++ +
Sbjct:  180 QELTGTALPNGLAGAGGALAGSAEDKINRELFIGNTTPEMTEQMLSDFLGKAMEQVGLSKAPGNPIVTCRTSGKFAFIELRTTDEAASALNLNNIPYLGAQLRVGRPSKYTGPETPHGNWEDILAKYMSGELQLPSKDGGGGAAPAPAAPHAIDATCVVELCQMLTQQDLENDDEYKEILEDTTEECGQFGSLKRVVIPR---SGPGATKIFLEYATKEDAARAIASLAGRTFDGRKVTAVYYDEARFAAQDY 429
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7823.15993.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WB13_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.320e-45
Identity = 98/244 (40.16%), Postives = 149/244 (61.07%), Query Frame = 1 
Query: 1903 AEGMMLMQNSATKLSCEVFVGNIPPETQAPTLQEYLGGALVQVNLCKAP-NPILSIRMNARFAFLEMRTAEDATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFG--LMGGAGQGGAAEAEPAPT---------STVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKKAFGSRTFDGKSVDATYFPEEQFASKSF 2598
            A G+  + ++  K++ E+F+GN  PE     L ++LG A+ QV L KAP NPI++ R + +FAF+E+RT E+A +ALNL+ IP+ GA L VGRP KY GP TPH  W D+LA+   G   +  AG GGA       T         + VV + +++T ++L +DE  K+++ED TEEC ++G++  + IP  G    G   +F+++ T +DA KA  +   RTFDG+ V A YF E +FA++ +
Sbjct:    7 AAGVGGIASAEDKINRELFIGNTTPEMTEQMLSDFLGKAMEQVGLSKAPGNPIVTCRTSGKFAFIELRTTEEAASALNLNNIPYLGAQLRVGRPSKYTGPETPHGNWEDILAKYMSGELQLPSAGGGGAXXXXXXXTXXXXXATDATRVVELRHMLTQQDLENDEEYKDILEDTTEECGQFGSLKKVVIPRTG---PGATKIFLEYATKDDAAKAIASLAGRTFDGRKVTAVYFDEGRFAAEDY 247
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7823.15993.1 vs.
Match: Hypothetical (protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E6_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.370e-44
Identity = 111/241 (46.06%), Postives = 145/241 (60.17%), Query Frame = 1 
Query: 1873 QVLTGQAEMPAEGMMLMQNSATKLSCEVFVGNIPPETQAPTLQEYLGGALVQVNLC-KAPNPILSIRMNARFAFLEMRTAEDATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMGGAGQGGAAEAEPAPTSTVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKKAFGSRTFDGKSVDATYFPEEQFASK 2592
            Q LTGQ     EG  ++  S TKL  E+++G+   E     LQE+LG A+ QV L  +  NPI+ +R +  FAF+E+R+ E+A   LNL+ IPF G  L +GRP KY GP  PH  W DVLA+   G M   G  GAA+ +P   S V+ + N+VT +EL DD   +E+VED  +EC KYGAV  +EIP  G A  GVG VF++F +  DA KA  A   RTF G  VDA YFPE ++  K
Sbjct:  299 QALTGQ--QAPEGASVVDPS-TKLYRELYIGSTTAEMTELGLQEFLGTAMQQVGLTLQEGNPIVQVRHSGTFAFVELRSIEEANNCLNLNSIPFMGQFLKIGRPSKYPGPQVPHLNWEDVLAKYMAGEMPTGG--GAAQQQP---SRVIALSNMVTTDELMDDTTYQEIVEDTRDECGKYGAVQSMEIPRPG-APHGVGKVFIEFTSTADAAKAIGALKGRTFAGNKVDARYFPESKYQVK 530
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BLAST of mRNA_E_fasciculatus_S2_contig7823.15993.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVH2_9STRA)

HSP 1 Score: 176 bits (446), Expect = 3.590e-44
Identity = 109/247 (44.13%), Postives = 152/247 (61.54%), Query Frame = 1 
Query: 1873 QVLTGQAEMPAEGMMLMQNSATKLSCEVFVGNIPPETQAPTLQEYLGGALVQVNLCKAP-NPILSIRMNARFAFLEMRTAEDATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFG-LMGG---AGQGGAAEAEPAPTSTVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKKAFGSRTFDGKSVDATYFPEEQFASKSF 2598
            Q LTGQA +PA  ++  +    K++ E+FVGN  PE     L+E+LG A+ QV L   P NPI S R++ +FAF+E+R+ E+A  ALNL+ IPF GA L VGRP K+ GP   H  W DVLA+   G L  G    GQG AA       + VV + N++T E+L+ +E   E+VED  +EC +YG +  + IP  G  GA    VF+++ + EDA KA K+   RTFDG+ V+AT+F E +F +K+F
Sbjct:  166 QQLTGQA-LPAGTVLDAEQE--KINRELFVGNTTPEMTERMLREFLGNAMEQVGLNVMPGNPITSCRVSGKFAFVELRSPEEAANALNLNNIPFMGAQLRVGRPSKWSGPPDSHGNWEDVLAKYMSGELQAGNTAPGQGAAAMNSNVKATRVVELKNMLTXEDLSVEEEYNELVEDTEQECKQYGQLLNVYIPKKGEPGATK--VFLEYASTEDASKAIKSLEGRTFDGQRVEATFFDETKFMNKTF 407
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7823.15993.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HGX3_9STRA)

HSP 1 Score: 172 bits (437), Expect = 2.410e-43
Identity = 101/252 (40.08%), Postives = 153/252 (60.71%), Query Frame = 1 
Query: 1873 QVLTGQAEMPAEGMMLMQNSAT---KLSCEVFVGNIPPETQAPTLQEYLGGALVQVNLCKAP-NPILSIRMNARFAFLEMRTAEDATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMGGAGQGGAAEAEPAPT------STVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKKAFGSRTFDGKSVDATYFPEEQFASKSF 2598
            Q LTGQA +PA    + +N++    K++ E+F+GN  PE     L ++LG A+ QV L   P NPI + R++ +FAF+E+R+ E+A  ALNL+ IP+ GA L VGRP KY G  T H  W D+LA+   G +    QGGA  A   P       + VV + N++T EELT D+  +E++ED  EECS++G++  + IP     G G   +F+++ + +DA KA +    RTFDG+ V+A ++ E +FA+K +
Sbjct:  126 QELTGQA-LPAGLTPVPENTSPAEDKVNRELFIGNTTPEMTEGMLTDFLGKAMEQVGLSNQPGNPITACRVSGKFAFIELRSKEEAANALNLNNIPYLGAQLRVGRPSKYTGVQTSHGNWEDILAKYMSGELKLPSQGGAPAAAATPAEDVGSPTRVVELKNMLTKEELTSDQDYEEIMEDTKEECSQFGSLKNLVIPR---DGPGATKIFLEYLSTDDAAKAIQGLAGRTFDGRKVEAVFYDETKFANKEY 373
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7823.15993.1 vs.
Match: Hypothetical (protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6W7_HETAK)

HSP 1 Score: 176 bits (446), Expect = 7.080e-43
Identity = 105/267 (39.33%), Postives = 150/267 (56.18%), Query Frame = 1 
Query: 1873 QVLTGQAEMPAEGMMLMQNSATKLSCEVFVGNIPPETQAPTLQEYLGGALVQVNLCKAP-NPILSIRMNARFAFLEMRTAEDATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMGGAGQGGAAEAEPAPT-----------------------STVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKKAFGSRTFDGKSVDATYFPEEQFASKSFA 2601
            Q LTGQA  PA+   +  +  TK+  +++VGN  PE   P L+E+LG A+ QV L +   N IL +R++  FAF+E+R+ E+A+  +NL+GIPF G  L + RP KY GP  PH  W D+LA+   G +    +  A  A PA                         S V+ + N+VT ++L DDE   E++ED  +ECSK+GAV  I IP       GVG VFV + + E+A+KA  A   RTF G +V+A YFPE ++ +K F+
Sbjct:  149 QQLTGQAP-PADPTAVAVDPQTKIYRDLYVGNCSPEMTEPALKEFLGSAMEQVGLNQQEGNCILQVRLSGTFAFIEVRSVEEASHMMNLNGIPFMGQFLKIKRPTKYPGPEVPHLNWDDILAKYMAGELKAKPKMPAVAAAPAAVPSXXXXXXXXXXXXXXXAGPGTPSKVMTLSNMVTHDDLADDETYDEILEDTQDECSKFGAVQTIAIPRPKDGPHGVGLVFVHYSSEEEAKKAIDALSGRTFAGNTVEAKYFPEAKYLAKDFS 414
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7823.15993.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2QA35_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.270e-42
Identity = 106/251 (42.23%), Postives = 152/251 (60.56%), Query Frame = 1 
Query: 1873 QVLTGQAEMPAEGMMLMQNSAT---KLSCEVFVGNIPPETQAPTLQEYLGGALVQVNLCKAP-NPILSIRMNARFAFLEMRTAEDATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMGGAGQGGAAEAEPAP------TST---VVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKKAFGSRTFDGKSVDATYFPEEQFA 2586
            Q LTGQ  +PA    +  N      K++ E+FVGN  PE    +L+++LG AL QV L  +P NPI S RM+ +FAF+E+RT ++A  ALNL+ IP+ GA L VGRP K+ G  TPH  W D+LA+   G +    Q G A   PAP      T+T   VV + N++T E+L  D+  +E++ED  +ECS +G++  +EIP    +G G G +F+++ +  DA KA +    RTFDG+ V A YF EE+F+
Sbjct:  254 QELTGQP-LPAGMQSVPANGPPGEEKINRELFVGNTTPEMTEESLKDFLGKALEQVGLVNSPGNPINSCRMSGKFAFIELRTVDEAKKALNLNNIPYMGATLRVGRPSKWTGEHTPHGNWEDILAKYMSGELQLPAQPGHAPPVPAPKAPDVPTATQTKVVALTNMLTKEDLQSDQDYEEILEDTKDECSGFGSLVKVEIPR---SGPGEGKIFLQYVSASDATKAIEGLRGRTFDGRKVAAVYFSEEKFS 500
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7823.15993.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.420e-15897.20protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.280e-15097.54protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.240e-6752.85protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical8.710e-4641.11protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
Hypothetical1.320e-4540.16protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]
Hypothetical1.370e-4446.06protein n=2 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Uncharacterized3.590e-4444.13protein n=1 Tax=Pseudo-nitzschia multistriata TaxI... [more]
Hypothetical2.410e-4340.08protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]
Hypothetical7.080e-4339.33protein n=2 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical1.270e-4242.23protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7823contigE_fasciculatus_S2_contig7823:515..6545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score461.1
Seed ortholog evalue3.2e-127
Seed eggNOG ortholog2880.D8LTD8
Model size3682
KEGG koko:K12818,ko:K12837
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.pre-mRNA 3'-splice site binding
EggNOG OGsKOG0120@1,KOG0120@2759
EC3.6.4.13
Cds size711
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7823.15993.1prot_E_fasciculatus_S2_contig7823.15993.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7823 2411..5398 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842444.042799-UTR-E_fasciculatus_S2_contig7823:514..24101696842444.042799-UTR-E_fasciculatus_S2_contig7823:514..2410Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7823 515..2410 +
1696842444.1327324-UTR-E_fasciculatus_S2_contig7823:5398..55731696842444.1327324-UTR-E_fasciculatus_S2_contig7823:5398..5573Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7823 5399..5573 +
1696842444.1446152-UTR-E_fasciculatus_S2_contig7823:5645..65451696842444.1446152-UTR-E_fasciculatus_S2_contig7823:5645..6545Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7823 5646..6545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842444.0658631-CDS-E_fasciculatus_S2_contig7823:2410..25151696842444.0658631-CDS-E_fasciculatus_S2_contig7823:2410..2515Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7823 2411..2515 +
1696842444.0769522-CDS-E_fasciculatus_S2_contig7823:3278..34641696842444.0769522-CDS-E_fasciculatus_S2_contig7823:3278..3464Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7823 3279..3464 +
1696842444.0881236-CDS-E_fasciculatus_S2_contig7823:3818..40041696842444.0881236-CDS-E_fasciculatus_S2_contig7823:3818..4004Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7823 3819..4004 +
1696842444.1075158-CDS-E_fasciculatus_S2_contig7823:4679..48141696842444.1075158-CDS-E_fasciculatus_S2_contig7823:4679..4814Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7823 4680..4814 +
1696842444.1215003-CDS-E_fasciculatus_S2_contig7823:5299..53981696842444.1215003-CDS-E_fasciculatus_S2_contig7823:5299..5398Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7823 5300..5398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7823.15993.1

>prot_E_fasciculatus_S2_contig7823.15993.1 ID=prot_E_fasciculatus_S2_contig7823.15993.1|Name=mRNA_E_fasciculatus_S2_contig7823.15993.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=237bp
MPAEGMMLMQNSATKLSCEVFVGNIPPETQAPTLQEYLGGALVQVNLCKA
PNPILSIRMNARFAFLEMRTAEDATAALNLDGIPFGGAALSVGRPKKYEG
PVTPHKTWFDVLAECSFGLMGGAGQGGAAEAEPAPTSTVVRIGNVVTPEE
LTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLE
DAQKAKKAFGSRTFDGKSVDATYFPEEQFASKSFAS*
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mRNA from alignment at E_fasciculatus_S2_contig7823:515..6545+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7823.15993.1 ID=mRNA_E_fasciculatus_S2_contig7823.15993.1|Name=mRNA_E_fasciculatus_S2_contig7823.15993.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6031bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7823:515..6545+ (Ectocarpus fasciculatus EfasUO2)
CTCCCTACCTCCGCCCCCTCGGCCCTATCCTCCATTGCTTTCGTCCCCTT
TTGTGATCCTTTCTTCCCTCTCCTCTCCTTGAACTCTTTTCTTCTCTTCA
TTGTTGTGCTGGTACATTATTGTTGCTTGCCCGACGGCGATGCTACGCGG
CTCCCTCCGTATCTCATCTCATGGTTGGGAATCTTCTCCGTGATCAACGG
GTCGTTTCAACTCAAAACCTTGGAAAAATTAGTATTGACGTGGCCTTGGT
ACGTCCGCCAGAAAAATACGGTGAAAATTACAGTGTACCATGATCGCCCC
CTACTAGAATATTCGGCGCGGTGTGCCTGAACAACACAACAAACGGTTGG
TTAACATACGAAATAATATTACACCTTGTCCTTATCTCATTGTTTCTTGT
GCTTGTACCATGGGATTTTTTCTGGCGCACTGCTGTCCGTTAAAAGCTCG
TTTTGTACCGCACGAACCGTACTACCGTGTGAAGTCTGAATTGTGATACA
ATACAATACAATTACAATACAATAGGCCGATGGCCGATACTGCTCGACTT
GACTCTCGAAACGTGATCGCGTTTATAAGAATTGGACAGGTGCAATAGGC
ACGTGTGTATATGGACTCCAATATATTTCGTGTTATCCGAACGGTTCTTG
AGAACGTTCTCTGTATGAAGACGAGCCAGGACGGCGGGAGATAGCCAAGA
TGCGTCGATCGTATAGAAGAGAGCTGCACCTTCTTGCAAAAGTGTCTTGG
CAAATCGTCACCCTTAAGTAGTTGTGATTTGCCGTCGTGGCTGAAGAATG
CGTTCCGAATGCTCACCAAGGACCGACGAAGTACTGCGGATTTCGTGGCC
GGATGTGGTTCTCTGTAGTATGCCGTCCGGCTCTTTGGCTCTTGTGTTGT
TTTCCGCATTGGTCACCACATAGTTCGGACAGGTCTGGGATGGTACAGCG
GCGATGATTCAGCATAGCGCCACGACGTGAACCAGCGGAACTGTGCGAGA
ATGGCGGCCCCCTCCTCCCCTCCTCCCCCGTTTTCTCTTCCTCTTCCTTC
CTTCCTTCTTTCCTTCCCTCCCTCCGCCCTCCTGTTGCTATTTTCCTCTT
TCGGCAGAAACAAAATCGATACAATAGTAACTCGAAAATACCTCTCTTTC
TCAACTCCCTTTTTCGTTGATATCCGGGTGAATGGAACTACCCTAACCTA
ACCGGTAGTCGAAGGGCTCCCGTGAATCAGTCAATCCGGGGGGTGGCGGC
AGATGAGAGTTAGCGAAGAAACGCCAGACAGGGGACAGGACAGGGGATGA
GACCGAGTGAGAGTATGCTACATGTCCACAGCACCATACAATTTATTCTC
TCCCTATGTAGTATAGCTCTCCCTCTCTCTCTCTCTTTGCTCCCCCTCCC
TGCCGTCGTGCGCTCCTTTTTTTCGTGTGGTTTTGTGTCGGCCCTTTTAC
GCGCGGAGTAGAGACTTGACCTACAGCTACAGGTATCGTGCGAAGGAAGT
ACGAAGCAATCGAGTGATATGATAGCTAGTTGGCTCTCAAGTCGTGGAAC
GGGCCCATTTCGATTTATGCCCACGGTTGGTGTGTTGACACTATTATACA
TGTACCGGGTTGTCTGTGAAGATGAAGATGCAAATGGAATGGCATGGAAT
GGCATCGATCGGCGTTTTCGTCGTCTCAAACAGCGTTTGGCGCACTATTG
ATAGACACTAGTCTACCAGGTGGAACGATACACCTCCCTCCCTCCCTCCC
CTGTGTGCGTTGTACGCGTGACTACTTTAGCCTTTCCCACCGCTTGGCAT
CTCACTCTCACTCTCCCTCCCTTTTCTCCCCATTGCTCATCTGTCAATTG
ATATCTTTGCCTAACGCTGACCCAGGTGCTCACAGGGCAGGCTGAAATGC
CCGCAGAAGGGATGATGTTGATGCAGAACTCTGCGACCAAGCTGAGTTGC
GAGGTGTTCGTTGGAAACATCCCTCCGGAGACCCAAGCTCCTACCCTTCA
GGTGTGATATGCTAACCCTATCCCTATGATAAGCTCCCATTGGCGATAGT
ATGATGCCTACGACAGGCGGCGGTGTATGTATACGGTGGTACCCCCGTTT
GGAGGTATTGTATTGTTCCCCGTTTTGGAGGTATTGCATTGTACCGTTGA
TTGTAGACGTACATACCTCCTTTTGGAGGTACGGTGCCTTACTTTGGAGG
CATTGTAATGTACTCCTTTTTTGGAGGTACTGCTGTACCTCCTTTTGGAA
ATGTTTTACCTCTGTTGGAGGTATTGTGCCTCCGTTGGAGGCATTGTAGT
TTTTCCCAAGAGACACAGCCACCACTGCAATGCTTTGTTCGAAATGGCAG
ACAGGAAAAAGGCACTTTTTGCGATGACATGCTATAAGAAGCTAGGAGAG
ACAGAGACACACACGCAACGAGATAAGGCAGAAAGATAGGGGCACATGGG
CGTGGAGACAGACGTGTCTTTTTTGCGGATTGAGGAGGTACAACCGATCG
TGACGTCAACTTGTACTGACACGAGCTGCGCATACAAGGCCCAGCGTGTA
GATGAATGAGATTGTCCACGCGGGGTGTTTGGGCAAGATGGGTGCCGACT
TTGGACTTGTGGCCATGTTAATTCGCCAGACTTTGATTTGTTTTACAGGC
ACCACCTTCCCCCCGATAAGTGCACTTGACTCTTGCTTCCCCTACAACAG
TTCTTAACTCGTGTCCTCTACCTGCCTCTTAATTCTTCCTCACCAACACC
AACGCAAAAAACAGGAGTACCTAGGCGGTGCGCTGGTTCAGGTGAATCTC
TGCAAGGCGCCCAACCCCATCCTGTCCATCCGCATGAACGCTCGCTTCGC
GTTCTTGGAGATGAGGACAGCGGAAGACGCAACGGCGGCCCTTAACCTAG
ACGGCATCCCCTTCGGGGGAGCGGCTCTCAGCGTCGGCCGTCCTAAGAAG
GTACGACTTGTCAAGTAACCATAAACCTAACCCATACGGTATGGCACCAA
TTTCGAACCCGTTAGCAAAGGACACCACAATATTAGAAGCCGTTGACAAT
GACGTGGGGTTGCGGCACATGCGGATAGAATTGGAGAGAGCTCGGAGGTT
TGGTGGTACTGGTTTGAAGTGTAGACTACTTGTGTTATGGGTGTGGAACA
GTGACGTGACGTACGTGAGGTGTTTTTTCTACAAGCATTGTACGAAGTAC
AGTAGAAGGATGTAGCATACGAGGTTTGTTGAGTCCTGGTGTGTTCATTA
CAACAACTACTACAACAACAAAAAAACGCCATGTTTCATGGAAACTTGCC
GCAGTACGAGGGGCCGGTCACGCCTCACAAGACTTGGTTCGACGTCCTCG
CGGAGTGCAGCTTCGGCCTCATGGGAGGAGCCGGCCAGGGCGGCGCCGCA
GAGGCGGAACCCGCCCCCACCTCCACCGTGGTTCGGATAGGGAATGTCGT
CACCCCGGAAGAGCTCACAGACGACGAGGCACAAAAGGAGGTAAGCACGG
TGATAACTTGTACTACAAAACAAATTGCAAGGAGGGTGTGTGTGTACTCG
TGGCCGTGCAGCCGTAGTCGTTAGAACGTTGACGTCGTATCCCTACAAGG
AAGAGGGAGGGGGGTGTACGTAATGCCGCACTACTAGCTGTAGTCGTTCA
GACCGTTGACCTGGCATCTCTACAAGGACGGGGCGGAGCGTTGTCGCCGG
CCCAGGCTACGTTATCAAGGATAAGGATGAACGAACGTCATCGTCATCCT
TTATCCTTACCCTGCTGACGTTTTGGAGGGCGGGGGGGGTCATTTGTGGT
CAAGCGGTTTGCGGAGGGATGGAGTTGGATGAGGCGTGAAGGGGGCGGGG
TCCTGCGGGCTTGCTCGTTAGATTGCACAATTACACATTACGCTTCCTGC
CAGGGTCTTGTGTCTCGTGCGGTTGGTTGCTGGTTGTGGTTGTAAGCAGC
GCATCAAACCCGCAAATTTGTACCGGACCATGTATCGTTTTTTTGTTAGC
TTTACCCACGGTTTGAGCGGAGTCGTCTTTGCGCCCCCACCCCCGGTCAA
TGGTGTAACCGCTACAATATGGCATGCTAAACATGAGTTCGCCTCCCCCC
ACCCCACCCCCACCCTCACCCTCCCGCTTGTTTGTATTGTATATTGTATA
CTATACATGTTACAGGTTGTGGAGGACATGACGGAGGAGTGCTCCAAGTA
CGGTGCCGTGGCGGGCATCGAGATTCCCCACGTCGGCGGGGCCGGCGCCG
GAGTAGGGTTCGTGTTCGTCAAGTTCCACACTCTCGAGGACGCGCAGAAG
GTAAGGAAAAGGGGGGGGGGCAGCAGTATTTGTAGGCGTTGTGCAATGTA
GGTTTTTTTGCTACTTGCAGTATTTATCCTGCACAAGCAGTTGTTGTTGG
TGTGTCATGCGGCAACTGCTACGATACATATCCGCAGCACGATATCCATA
GATACATAGTGCGCAAAAGGGATGTAAAAGGGGGGTGCACAGCCGTATTG
GTTGGCTTTGGACAGCCACACGAGCTAGTTTACAAGGCTTGAAGTATTCA
TCCTGCACAGAAAGTTGTTGGTGTGTGTCATGCTATACGTACGTACAACT
GCTACGATACATATCCACAGCACTCTTATACTGTGTTTTTTCTCAATGGT
GGATTGAAGAGACAAAAATCGCAACATGCGCGCCTAAGTTTTCAGCAAAC
TAGTTACAACCGAGGTAAGTATTCTGCCATGCTTGTGCCATGCATAACAA
TCCCGTCGCTGATGTGCGTCCGCTCCCCCCCCCAGGCGAAGAAGGCTTTT
GGCTCCCGCACGTTCGACGGCAAGTCTGTGGACGCGACCTACTTCCCTGA
GGAGCAGTTCGCCTCGAAATCATTCGCCTCGTGAAGTGATTCCGTCGACT
CGACTCGGCCCCCGTGTGACTGTGTAAAGAGTAAAGAGTCAGTCCTGTGC
GCGTGACGTGGCATCGCATCTCCGGCGTGATGGCTTTGATGGCTTTTGGC
AGGGTTAGGTCTTTTGGTCTTCTCTTCTCGTATGTTTCTTGTCGATCGAA
TGCTATCATGTCACATACAATCTCGGTTATGTACCATGTTACAGTAGAAG
TTTCGGTCGCGGTTTTGTTGAATTTATTCAGATCGAGAAGAGTGCGAAGG
ACCCTGACTATATGATAAGTCGTGCCGGAATGATGATGGTACTATAGCGC
AATAATCAAGATGATTCAAGAGGAGTTGACAGTTTTTCTAGATACACTCA
CCACGTCATACTACTGTAGCTGTAGGCGACGTTGTTGTCGTTTGTGGCGA
CATTCTGATCAATCGGCAGTACATGGGGATGGAGATGGAGTTGGTAGTGG
CACTCTCTTTGTCGGTTTCTACACCATGCCAAAGCACGACCCCAGCACGA
GTTCGGAGCGCGCCAAGCTCATGCAAAGGGCTAAGGTACTTGTAGGCTCT
CTCGTTCTTGTGGTTGTGCGTTTGTTCAATCGCTTTTGTTTTCTTGTGGT
GGGTTCCGTATCAAACAAACCCCATCTCCTCTGTCGCGGGCATGGGTGGA
TGTACGGTAGGACTGGGGTACGTTGGACTGGCGTTGTGAAGTTCATTTGT
GAATCGTGTGCATGGACCGTTCGAGAGCGCAACCGGCACAGCAGCAGTAG
TTTTGTTTTTTAAGTGTGATTGTTGTTGGCGTTATAATCTCGGGGTGAGA
GCATGTAGCAGCTCATATAGAAGTTATTGTTTTGTAGCAGGGATTGCATT
ATTTTCCGGTCGGTCGCTGTGTTTGATTTTCGCATGCATCGACTGCTGTA
TTTGTACAACTTGCGTGAGAATGGAAGAACGAGAGTGCAAACTCTGTATC
AATTATATTTTTAGTCATGTGGTTTTGCGTCTGCTTTATTTGAATGTGTT
TGTTGGTTTTGTAATTCTCGTGGGTGGCTCCTGCGGAGTGATGGCTTCCC
CATGGCTACCTGTTGGACACGTGACGGCGAGACGATTTTCCCAGACGCTT
CCTTGGGCCTGGTGTAGTGCCTTTTTCTCCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7823:515..6545+

>mRNA_E_fasciculatus_S2_contig7823.15993.1 ID=mRNA_E_fasciculatus_S2_contig7823.15993.1|Name=mRNA_E_fasciculatus_S2_contig7823.15993.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=711bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7823:515..6545+ (Ectocarpus fasciculatus EfasUO2)
ATGCCCGCAGAAGGGATGATGTTGATGCAGAACTCTGCGACCAAGCTGAG
TTGCGAGGTGTTCGTTGGAAACATCCCTCCGGAGACCCAAGCTCCTACCC
TTCAGGAGTACCTAGGCGGTGCGCTGGTTCAGGTGAATCTCTGCAAGGCG
CCCAACCCCATCCTGTCCATCCGCATGAACGCTCGCTTCGCGTTCTTGGA
GATGAGGACAGCGGAAGACGCAACGGCGGCCCTTAACCTAGACGGCATCC
CCTTCGGGGGAGCGGCTCTCAGCGTCGGCCGTCCTAAGAAGTACGAGGGG
CCGGTCACGCCTCACAAGACTTGGTTCGACGTCCTCGCGGAGTGCAGCTT
CGGCCTCATGGGAGGAGCCGGCCAGGGCGGCGCCGCAGAGGCGGAACCCG
CCCCCACCTCCACCGTGGTTCGGATAGGGAATGTCGTCACCCCGGAAGAG
CTCACAGACGACGAGGCACAAAAGGAGGTTGTGGAGGACATGACGGAGGA
GTGCTCCAAGTACGGTGCCGTGGCGGGCATCGAGATTCCCCACGTCGGCG
GGGCCGGCGCCGGAGTAGGGTTCGTGTTCGTCAAGTTCCACACTCTCGAG
GACGCGCAGAAGGCGAAGAAGGCTTTTGGCTCCCGCACGTTCGACGGCAA
GTCTGTGGACGCGACCTACTTCCCTGAGGAGCAGTTCGCCTCGAAATCAT
TCGCCTCGTGA
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