mRNA_E_fasciculatus_S2_contig7814.15985.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7814.15985.1
Unique NamemRNA_E_fasciculatus_S2_contig7814.15985.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7814.15985.1 vs.
Match: Ephrin_rec_like (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U0_ECTSI)

HSP 1 Score: 409 bits (1051), Expect = 7.260e-143
Identity = 193/207 (93.24%), Postives = 197/207 (95.17%), Query Frame = 1
Query:    1 MNPDGGLLRAFVVPTTLALAWQAWTTMTASNSTLFVSATLEQCHLDCAGNTTAELVADAALNGVSWSVWDTQRLVGPTEPASEVNATYPYARAPLPLPFHSFCQLGCSYFFAGSPQNTTCGGLCDNFYARNVSVGINDYAEKARLECRDGCNIAVLRCQPGYSCADGVMSVCSPGTYRNTSYDMINTCTQCPKGTYRATGKARGVDD 621
            M PDGGLLRAFVVPTT ALAWQAWTT+TASNS+LFVSATLEQCHLDCAGNTTAELVADAALNG SWSVWDTQRLVGPTEPASEVNATYPYARAPLPLPFHSFCQLGCSYFFAGSP+NTTC GLCD+FY RNVSVGINDYAEKARLECRDGCNIAVLRCQPGYSCA GVMS CSPGTYRNTSYDMINTCTQCPKGTYRA GK  GVDD
Sbjct:    1 MKPDGGLLRAFVVPTTFALAWQAWTTLTASNSSLFVSATLEQCHLDCAGNTTAELVADAALNGGSWSVWDTQRLVGPTEPASEVNATYPYARAPLPLPFHSFCQLGCSYFFAGSPRNTTCSGLCDDFYVRNVSVGINDYAEKARLECRDGCNIAVLRCQPGYSCAAGVMSECSPGTYRNTSYDMINTCTQCPKGTYRAKGKGSGVDD 207          
BLAST of mRNA_E_fasciculatus_S2_contig7814.15985.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQK9_9STRA)

HSP 1 Score: 131 bits (330), Expect = 6.430e-34
Identity = 63/141 (44.68%), Postives = 83/141 (58.87%), Query Frame = 1
Query:  217 RLVGPTEPASEVNATYPYARAPLPLPFHSFCQLGCSYFFAGSPQNTTCGGLCDNFYARNVSVGINDYAEKARLECRDGCNIAVLRCQPGYSCADGVMSVCSPGTYRNTSYDM-------INTCTQCPKGTYRATGKARGVD 618
            RL GPT+   +    +P+A A  P     FCQLGC  F+   P+NTTC  LC+ FY   ++VG ND AE+A+LEC+DGC IA+  CQ GY C +G+M  C  GTYR    D+         +CT+CP G YR+T K +  D
Sbjct:   44 RLTGPTK--MQQTKQHPWAMAAFPTKQKGFCQLGCQLFYTEVPKNTTCKRLCNYFYRYKITVGYNDLAEEAKLECQDGCEIALQVCQAGYYCDEGIMLPCPAGTYREPVTDVSILALEKATSCTKCPYGRYRSTNKGKSAD 182          
BLAST of mRNA_E_fasciculatus_S2_contig7814.15985.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TV74_9STRA)

HSP 1 Score: 131 bits (329), Expect = 8.820e-34
Identity = 67/151 (44.37%), Postives = 82/151 (54.30%), Query Frame = 1
Query:  157 AELVADAALNGVSWSVWDTQRLVGPTEPASEVNATYPYARAPLPLPFHSFCQLGCSYFFAGSPQNTTCGGLCDNFYARNVSVGINDYAEKARLECRDGCNIAVLRCQPGYSCADGVMSVCSPGTYRNTSYDMINTCTQCPKGTYRATGKAR 609
            A L A A L+       D  R VGPT P +     +P+  AP P P+  FCQ GCS FF   P  T C   CD  Y  +V+V  ND AE ARLECRDGC + +LRCQ GY C  G M  C  GTYR+  +  +  C  CP+G YR+  + R
Sbjct:   11 ALLPAAADLDHCKADCSDAARPVGPTRPPN--TRGHPWFPAPNPNPYLQFCQTGCSLFFESYPVLTDCQAECDRIYRYDVTVAYNDQAEVARLECRDGCEMGLLRCQAGYYCTAGSMLQCPIGTYRDVDFAAVEACVDCPRGRYRSDPRGR 159          
BLAST of mRNA_E_fasciculatus_S2_contig7814.15985.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEG6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 6.850e-29
Identity = 60/142 (42.25%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  217 RLVGPTEPASEVNATYPYARAPLPLPFHSFCQLGCSYFFAGSPQNTTCGGLCDNFYARNVSVGINDYAEKARLECRDGCNIAVLRCQPGYSCADGVMSVCSPGTYRNTSYDM-------INTCTQCPKGTYRATGKARGVDD 621
            RL GP +P      T+P+  A  P    +FC+LGC YFF+    N TC   C   Y    + G +D AE A+LEC DGCNIA+  CQ GY C +G M+VC  G YR +  D+       ++TC  CP G YRA  K R  +D
Sbjct:   44 RLFGPIKPPD--TRTHPWKVAQFPSTTTAFCKLGCQYFFSYYSNNNTCINQCKYQYRYQATTGYSDSAELAKLECLDGCNIALSICQAGYYCVNGNMTVCPAGKYRESVSDLSLITLEKVHTCINCPYGRYRALDKGRSAND 183          
BLAST of mRNA_E_fasciculatus_S2_contig7814.15985.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CHA6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.830e-27
Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  247 EVNATYPYARAPLPLPFHSFCQLGCSYFFAGS-----PQN-------------TTCGGLCDNFYARNVSVGINDYAEKARLECRDGCNIAVLRCQPGYSCADGVMSVCSPGTYRNTSYDMINTCTQCPKGTYR 591
            ++   +P+AR+P P P+  FCQ+GC+Y++        PQ              + C   C++ +  +++ G +D AE ARLEC DGC IA LRCQPGYSC +G M+ C PGTYR+  Y  +  C  CP G YR
Sbjct:  166 DLTRPHPWARSPEPNPYMKFCQIGCTYYYNQEQWGIYPQREVPSDVVENWNTLSACLARCNHTFRYDITTGYSDIAEMARLECWDGCQIANLRCQPGYSCFNGDMNPCKPGTYRHNEYTRVEQCYDCPNGRYR 298          
BLAST of mRNA_E_fasciculatus_S2_contig7814.15985.1 vs.
Match: Ephrin_rec_like (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBR7_9STRA)

HSP 1 Score: 111 bits (278), Expect = 9.260e-27
Identity = 57/131 (43.51%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  241 ASEVNATYPYARAPLP--LPFHSFCQLGCSYFFAGSPQNTTCGGLCDNFYARNVSVGINDYAEKARLECRDGCNIAVLRCQPGYSC--ADGVMSVCSPGTYRNTSYDMINTCTQCPKGTYRATGKARGVDD 621
            A  V  T+PYA A          FC+ GC+YF++ SP   +C   CD  Y +  S  ++D+AEKARL+CRDGC I    CQPGY C  A G++  C PGTYRN S   +  C  CP G YR      G+ D
Sbjct:   12 AYAVVRTHPYAVADATRLATLTQFCEAGCAYFYSSSPTLQSCDVNCDEMYRQRTSFNVSDWAEKARLDCRDGCRIGFRVCQPGYKCEHAHGMVE-CEPGTYRNASDADVTQCIACPAGHYREAPGGAGLLD 141          
BLAST of mRNA_E_fasciculatus_S2_contig7814.15985.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZTF7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.200e-22
Identity = 51/136 (37.50%), Postives = 69/136 (50.74%), Query Frame = 1
Query:  295 FHSFCQLGCSYFFAG--SPQNTT-CGGLCDNFYARNVSVGINDYAEKARLECRDGCNIAVLRCQPGYSCAD-------------------------GVMSVCSPGTYRNTSYDMINTCTQCPKGTYRATGKARGVD 618
            ++ FC++GC+ FF+    P + + C   CD  Y  N++VG ND  E +RLECRDGC +A+ RCQPGY C+                          G MS C  G YR+ SYD I  C  CP G +R   K + +D
Sbjct:   96 YYKFCEVGCTLFFSSISDPMHLSECTHKCDQIYQYNITVGYNDLMEVSRLECRDGCQMALKRCQPGYFCSQVSLLNDDENSTLGPKSHGRDTRYTGGYMSHCPAGKYRDFSYDAIEMCVDCPPGRFREDTKGKSLD 231          
BLAST of mRNA_E_fasciculatus_S2_contig7814.15985.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSZ0_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.350e-22
Identity = 50/119 (42.02%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  307 CQLGCSYFFA---GSPQNTTCGGLCDNFYARNVSVGINDYAEKARLECRDGCNIAVLRCQPGYSCAD---------------------GVMSVCSPGTYRNTSYDMINTCTQCPKGTYR 591
            CQLGC+ FF+      Q ++C  LCD+ YA N++V  ND  E  RLECRDGC++A++RCQPGY C                       G M  C PG+YR+ SY  ++TC  CP G +R
Sbjct:  232 CQLGCTLFFSLRENPKQLSSCLSLCDDKYAYNITVSYNDLMELVRLECRDGCHMALMRCQPGYFCLQPSTTLDDDGKHHLSSTSLPNGGSMHECLPGSYRDVSYHAVDTCVPCPPGRFR 350          
BLAST of mRNA_E_fasciculatus_S2_contig7814.15985.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CE24_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.890e-18
Identity = 44/84 (52.38%), Postives = 48/84 (57.14%), Query Frame = 1
Query:  346 QNTT--CGGLCDNFYARNVSVGINDYAEKARLECRDGCNIAVLRCQPGYSCADGVMSVCSPGTYRNTSYDMINTCTQCPKGTYR 591
            QNT   C   CD  Y  + + G ND    A LEC DGC IA LRCQPGYSC  G+M  C PGTYR   Y  +  C  CPKG YR
Sbjct:  199 QNTLSRCMQRCDYTYRFSDTTGYNDVTMLANLECYDGCQIANLRCQPGYSCFYGMMEKCVPGTYRPNDYHKVEQCFNCPKGRYR 282          
BLAST of mRNA_E_fasciculatus_S2_contig7814.15985.1 vs.
Match: Ephrin_rec_like (domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZJ0_THAOC)

HSP 1 Score: 92.0 bits (227), Expect = 6.680e-18
Identity = 65/197 (32.99%), Postives = 86/197 (43.65%), Query Frame = 1
Query:   94 STLFVSATLEQCHLDCAGNTTAELVADAALNGVSWSVWDTQRLVGPTEPASEVNATYPYARAPLP--LPFHSFCQLGCSYFF----AGSPQNTT------CGGLCDN-FYARNVSVGINDYAEKARLECRDGCNIAVLRCQPGYSC------------ADGVMSVCSPGTYRNTSYDMINTCTQCPKGTYRATGKAR 609
            S + V AT EQC +DC         +D       W   D      P   A  +   YPY  A       + +FC+LGC+YFF    +  P++ +      C   C+  F   + +   ND    ARLECRDGC +A+ RCQPGY C            A G M+ C PGTYR+  Y  +  C  CP   +R   K R
Sbjct:  150 SAVVVLATEEQCRIDCN--------SDDRTPTRPWHEQD------PLRNALRLTRPYPYHAAADDDERDYPAFCRLGCNYFFVPESSDDPEDESKSTLDQCLERCEEEFEYTSTTPPYNDLVAIARLECRDGCLLALRRCQPGYYCSQVSFRDGNGTYAGGQMTPCPPGTYRDVDYGAVEACVPCPPNHFREDVKGR 332          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7814.15985.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
Ephrin_rec_like7.260e-14393.24domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical6.430e-3444.68protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
Hypothetical8.820e-3444.37protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Hypothetical6.850e-2942.25protein (Fragment) n=1 Tax=Chromulina nebulosa Tax... [more]
Hypothetical1.830e-2740.60protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Ephrin_rec_like9.260e-2743.51domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical1.200e-2237.50protein (Fragment) n=1 Tax=Ditylum brightwellii Ta... [more]
Hypothetical2.350e-2242.02protein n=1 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Hypothetical5.890e-1852.38protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Ephrin_rec_like6.680e-1832.99domain-containing protein (Fragment) n=1 Tax=Thala... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7814contigE_fasciculatus_S2_contig7814:5751..7211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score408.7
Seed ortholog evalue1.9e-111
Seed eggNOG ortholog2880.D7G7U0
Model size708
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2D7CU@1,2S58T@2759
Ec32 ortholog descriptionInsulin-like growth factor binding protein, N-terminal
Ec32 orthologEc-06_000310.1
Cds size708
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842443.3657174-CDS-E_fasciculatus_S2_contig7814:5750..61761696842443.3657174-CDS-E_fasciculatus_S2_contig7814:5750..6176Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7814 5751..6176 +
1696842443.3780055-CDS-E_fasciculatus_S2_contig7814:6508..66521696842443.3780055-CDS-E_fasciculatus_S2_contig7814:6508..6652Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7814 6509..6652 +
1696842443.3893518-CDS-E_fasciculatus_S2_contig7814:7073..72111696842443.3893518-CDS-E_fasciculatus_S2_contig7814:7073..7211Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7814 7074..7211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7814.15985.1prot_E_fasciculatus_S2_contig7814.15985.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7814 5751..7211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7814.15985.1

>prot_E_fasciculatus_S2_contig7814.15985.1 ID=prot_E_fasciculatus_S2_contig7814.15985.1|Name=mRNA_E_fasciculatus_S2_contig7814.15985.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=236bp
MNPDGGLLRAFVVPTTLALAWQAWTTMTASNSTLFVSATLEQCHLDCAGN
TTAELVADAALNGVSWSVWDTQRLVGPTEPASEVNATYPYARAPLPLPFH
SFCQLGCSYFFAGSPQNTTCGGLCDNFYARNVSVGINDYAEKARLECRDG
CNIAVLRCQPGYSCADGVMSVCSPGTYRNTSYDMINTCTQCPKGTYRATG
KARGVDDCALCPVNTYQNTTGATAETDCIRCPDGFY
back to top

mRNA from alignment at E_fasciculatus_S2_contig7814:5751..7211+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7814.15985.1 ID=mRNA_E_fasciculatus_S2_contig7814.15985.1|Name=mRNA_E_fasciculatus_S2_contig7814.15985.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1461bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7814:5751..7211+ (Ectocarpus fasciculatus EfasUO2)
ATGAATCCAGACGGCGGCCTGCTGAGAGCTTTCGTCGTGCCCACTACGTT AGCACTGGCATGGCAAGCGTGGACGACAATGACCGCCAGCAATTCGACCT TGTTCGTTTCCGCAACCCTGGAGCAGTGCCACCTAGACTGCGCAGGCAAC ACCACCGCCGAACTTGTTGCCGATGCAGCTCTGAATGGTGTAAGCTGGAG TGTGTGGGACACCCAGCGACTTGTGGGGCCGACTGAACCCGCGTCGGAGG TAAATGCGACGTACCCCTATGCCAGGGCACCGCTCCCGCTTCCTTTCCAC AGCTTCTGCCAGTTGGGATGCTCTTACTTTTTCGCGGGCTCGCCTCAAAA CACGACCTGTGGTGGACTCTGCGACAATTTCTACGCTCGGAACGTGTCCG TGGGGATCAACGACTACGCAGAAAAGGTGATGATTGACGGCTTTGGCGGG TTTTGGAAGCTTGAACGTGTTGCACACGTGTTCAAATTTAAGCATCGAAT ACTGTGCCCTCTTCAGAGTCGCAATACAACACGGACGGTGTATATGTAGT CTAAGCAAGCAACTGCAGTACTGTCTGCTGTATACGCTGACCTCCCCGTC TTCGCAGTTCGATGACGTCGTCAGTCGTTTGGAAGAACACATGCAGACTC TGCATATGCAGACAAAACACAACAGGGACGTGTGCTGGGGACCTACGTGT AGACTAAGCTACTTACAACAATTACTTGCGTGCCGTCGCTCGTGGCTGGT GCAAACAGGCCAGGCTTGAATGTCGAGATGGTTGCAACATTGCGGTGCTA CGGTGCCAGCCAGGGTACTCGTGTGCGGACGGCGTCATGTCGGTCTGCTC TCCAGGCACCTATCGCAACACTTCGTACGACATGATAAACACGTGCACAC AGGTCAGCGCCCTAAAGTAGTCCAATGCACGTTTTTTCTCGCCAATAAAT AATATCATAACAGTACGAACCGTTATATTGTAGTTTCTGTCGTGGACGCC GATAGTCGGTGGGCAACTACTGTACGTAACGACCACAGGCAAGCAACCTC ACGACACTCAGAAAGAACGATGGTGTCCAAGTCATCCGAAAAGGATCACG GACTTCCGAGGTGTAATTTTCGCTGCTGGTGTATCTCACGTGTTTGTTAC ACAGATAATTGCCTCTCTGTCAGGACAACCAGTACCATGGGACCCTCCGA GGCGCTCCGAGGCAATATTGTAGGCCGTCGTTTTTTCTCGTGTTGCGCGA GATACAAGCGCTTGATCTCGGTCACCTCACCCCCTCAAACAAACCCACGT CTGCTGTGCACAACTCTGCACAGTGCCCGAAGGGGACATACCGCGCGACA GGGAAAGCCCGTGGCGTGGACGATTGCGCACTTTGCCCCGTCAACACCTA CCAGAACACGACGGGAGCGACTGCAGAAACCGACTGCATCCGGTGCCCCG ATGGCTTCTAC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7814:5751..7211+

>mRNA_E_fasciculatus_S2_contig7814.15985.1 ID=mRNA_E_fasciculatus_S2_contig7814.15985.1|Name=mRNA_E_fasciculatus_S2_contig7814.15985.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=708bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7814:5751..7211+ (Ectocarpus fasciculatus EfasUO2)
ATGAATCCAGACGGCGGCCTGCTGAGAGCTTTCGTCGTGCCCACTACGTT
AGCACTGGCATGGCAAGCGTGGACGACAATGACCGCCAGCAATTCGACCT
TGTTCGTTTCCGCAACCCTGGAGCAGTGCCACCTAGACTGCGCAGGCAAC
ACCACCGCCGAACTTGTTGCCGATGCAGCTCTGAATGGTGTAAGCTGGAG
TGTGTGGGACACCCAGCGACTTGTGGGGCCGACTGAACCCGCGTCGGAGG
TAAATGCGACGTACCCCTATGCCAGGGCACCGCTCCCGCTTCCTTTCCAC
AGCTTCTGCCAGTTGGGATGCTCTTACTTTTTCGCGGGCTCGCCTCAAAA
CACGACCTGTGGTGGACTCTGCGACAATTTCTACGCTCGGAACGTGTCCG
TGGGGATCAACGACTACGCAGAAAAGGCCAGGCTTGAATGTCGAGATGGT
TGCAACATTGCGGTGCTACGGTGCCAGCCAGGGTACTCGTGTGCGGACGG
CGTCATGTCGGTCTGCTCTCCAGGCACCTATCGCAACACTTCGTACGACA
TGATAAACACGTGCACACAGTGCCCGAAGGGGACATACCGCGCGACAGGG
AAAGCCCGTGGCGTGGACGATTGCGCACTTTGCCCCGTCAACACCTACCA
GAACACGACGGGAGCGACTGCAGAAACCGACTGCATCCGGTGCCCCGATG
GCTTCTAC
back to top