mRNA_E_fasciculatus_S2_contig7814.15984.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7814.15984.1
Unique NamemRNA_E_fasciculatus_S2_contig7814.15984.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7814.15984.1 vs.
Match: Ankyrin (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U1_ECTSI)

HSP 1 Score: 513 bits (1320), Expect = 2.020e-179
Identity = 277/325 (85.23%), Postives = 292/325 (89.85%), Query Frame = 1 
Query:  349 MIRQISKASDLQRLARVLDNRRINTSCRETFAVAVRDANPAVVEMWLHHGKKHKGAYFLEAFRAWGEAAGATGGVGGRAGNRSPSSIPLHLSCHAGAPGIVSVLLRFMNESYSCDDRVAMVNARDLNGRTALHLSSWSPRPHCPGRRNIIVRELISNGADVKVEDNHGRTALHEACRAADHLAVEIXXXXXXXXXXXXXXXXXPFETATAKRHRRLLDAVFRKKLSTRRYLQLCARVTAKNSVSRIMRGFVPLCDTCRVRPAEACDAQKRDDFAAWVFKHRRWPKAGEGKWREVRPSCVEKKPSS-STNKLNTE----GGDDKDD 1308
            MIR+ISKASDLQRLARVLD+R+INTSCRETFA AVRDANPA VEMWLHHGK+HKGAYFL+AFRAWGEAA A G VGGR GNRSP SIPLHLSCHAGAP IVSVLLRFM ESYSCDDR+AMVNARDLNGRTALHLSSWSPR  CPG RN IVREL+S+GA+VK EDNHGRTALHEACRAADH AVE XXXXXXXXXXXXXXXXX  ETATAKRH RLLDA+FRK LSTRRYL LCARVTAK SVSRIMR FVPLCDTC+VRPAEAC+ QKRDDFAAWVFKH RWPKAGEGKWREVRPSCVEKKP S ST+K+N +    GGDD DD
Sbjct:    1 MIREISKASDLQRLARVLDHRKINTSCRETFAAAVRDANPAAVEMWLHHGKEHKGAYFLDAFRAWGEAA-AAGHVGGRGGNRSPPSIPLHLSCHAGAPEIVSVLLRFMTESYSCDDRIAMVNARDLNGRTALHLSSWSPRARCPGTRNAIVRELLSHGANVKAEDNHGRTALHEACRAADHFAVETXXXXXXXXXXXXXXXXXXXETATAKRHWRLLDALFRKNLSTRRYLHLCARVTAKTSVSRIMRRFVPLCDTCQVRPAEACNTQKRDDFAAWVFKHHRWPKAGEGKWREVRPSCVEKKPRSISTHKINNKDPEGGGDDNDD 324
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7814.15984.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Ankyrin2.020e-17985.23n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7814contigE_fasciculatus_S2_contig7814:2036..5332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score513.5
Seed ortholog evalue1e-142
Seed eggNOG ortholog2880.D7G7U1
Model size1317
KEGG koko:K20175
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG0666@1,KOG2319@2759
Cds size1317
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842443.2665827-CDS-E_fasciculatus_S2_contig7814:2035..23631696842443.2665827-CDS-E_fasciculatus_S2_contig7814:2035..2363Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7814 2036..2363 -
1696842443.2898958-CDS-E_fasciculatus_S2_contig7814:2824..29101696842443.2898958-CDS-E_fasciculatus_S2_contig7814:2824..2910Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7814 2825..2910 -
1696842443.3070557-CDS-E_fasciculatus_S2_contig7814:3282..33821696842443.3070557-CDS-E_fasciculatus_S2_contig7814:3282..3382Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7814 3283..3382 -
1696842443.3223286-CDS-E_fasciculatus_S2_contig7814:3919..45791696842443.3223286-CDS-E_fasciculatus_S2_contig7814:3919..4579Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7814 3920..4579 -
1696842443.3347077-CDS-E_fasciculatus_S2_contig7814:5189..53321696842443.3347077-CDS-E_fasciculatus_S2_contig7814:5189..5332Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7814 5190..5332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7814.15984.1prot_E_fasciculatus_S2_contig7814.15984.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7814 2036..5332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7814.15984.1

>prot_E_fasciculatus_S2_contig7814.15984.1 ID=prot_E_fasciculatus_S2_contig7814.15984.1|Name=mRNA_E_fasciculatus_S2_contig7814.15984.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=439bp
MSTDAIASWLRVRQINSLAGHFLAKAASCDDYEPDKLKGNATLASLKRSQ
PMHHRVFWREETTSASLWEGAYRAIEDAAAAKGSKKKRNSPTPPSSFSSP
QGPDDPKPNKRLSPAAMIRQISKASDLQRLARVLDNRRINTSCRETFAVA
VRDANPAVVEMWLHHGKKHKGAYFLEAFRAWGEAAGATGGVGGRAGNRSP
SSIPLHLSCHAGAPGIVSVLLRFMNESYSCDDRVAMVNARDLNGRTALHL
SSWSPRPHCPGRRNIIVRELISNGADVKVEDNHGRTALHEACRAADHLAV
EILLKSGANPLQEDDRGRTPFETATAKRHRRLLDAVFRKKLSTRRYLQLC
ARVTAKNSVSRIMRGFVPLCDTCRVRPAEACDAQKRDDFAAWVFKHRRWP
KAGEGKWREVRPSCVEKKPSSSTNKLNTEGGDDKDDGM*
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mRNA from alignment at E_fasciculatus_S2_contig7814:2036..5332-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7814.15984.1 ID=mRNA_E_fasciculatus_S2_contig7814.15984.1|Name=mRNA_E_fasciculatus_S2_contig7814.15984.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3297bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7814:2036..5332- (Ectocarpus fasciculatus EfasUO2)
ATGAGCACGGACGCGATCGCCTCTTGGCTTCGTGTTCGGCAAATAAACTC
TTTGGCCGGTCACTTCCTGGCGAAGGCAGCGTCTTGCGATGATTATGAAC
CCGATAAGTTGAAAGGAAATGCGACCCTCGCCAGCCTAAAAAGGTACGCT
ATCCAAAGGGGAAGTCTTCTGTGTGGCCCCGGACCGAAATTCTTCAGTAG
AGGAGAGGCGCAGAGTAGTGTAAAAATGCGAATGACGATTGATACGGTCG
CATGTTTTTCACGCCTAGATCCCGCCAATTTGCCCTTATCCCTTGTGCGG
TCGTGAAAAAACTACTACCCAACGGGCGCCCGGTTTACAACTCCCAAAAT
CCAGCAACAGCAGTGGGTACATTGCGCGCGGTCAGGTTTCGAAGTAGTCC
TCCCCGCAGTTCAGTATAAAATTGGTTTCGGGGTGCGTTCTGCGTTCGTT
CTGGAAAGAATGCCTACCGACGCCGTATAGCCAGCATGGAGTGAAGATTG
TATCGACGCTATTTGTGTGGTGAACAATGATATAGTGTACACACACGTAT
ACCACCTCCTCTGCTACATATTGCTTTGCTTCTCCCGTAAGACAAATTTT
CGCTTTAAGAGCAGTGTCCTCAAGTCCTGACCATTCAACACAACCCGACA
ACATATTATCGCTCGCGTCCCGCGGCTGTCTACCGAGAACTAACCAATAG
ACTAATGCCGCTACGCGCAAACGCTTTGGTACACGTCGTGGCACATTTCT
CAGATCGCAGCCTATGCACCACCGCGTCTTCTGGCGAGAAGAGACTACAT
CCGCGTCGCTATGGGAAGGCGCTTATCGAGCCATAGAGGACGCAGCGGCC
GCGAAGGGCAGCAAAAAAAAACGAAACTCTCCAACACCGCCTTCTTCCTT
CTCCTCACCCCAAGGTCCCGACGACCCAAAACCAAACAAACGGCTTAGTC
CCGCCGCTATGATTCGACAGATATCGAAGGCTTCGGATTTGCAACGGCTA
GCTCGAGTGCTTGACAATAGGAGAATCAACACTTCGTGCAGGGAGACATT
CGCGGTGGCCGTGCGAGACGCCAACCCGGCCGTTGTTGAGATGTGGCTAC
ACCACGGCAAAAAGCACAAGGGTGCCTACTTTCTTGAAGCTTTTCGTGCC
TGGGGGGAAGCTGCTGGTGCTACCGGCGGTGTTGGCGGCAGGGCGGGCAA
TCGGTCTCCATCTAGCATCCCATTACACCTGTCGTGCCATGCAGGCGCGC
CAGGAATCGTGTCGGTGCTCCTGCGCTTCATGAACGAGTCGTACTCGTGC
GATGATCGCGTCGCCATGGTGAACGCGAGAGATCTCAATGGAAGGACGGC
TCTGCACTTATCGAGCTGGTCGCCGAGGCCTCATTGTCCCGGTAGAAGAA
ACATCATTGTCAGGTTGGTTCTGGTTCTTCTCGTATCGCCCCCACAATAA
AGGGTGCTTCGAATCATCCCTCCCATGAAACTATCACAGCCAGGATTGTG
GAAGTTCCGTATGTAACTCGGGACGACCACAAGGAGGGCTGGTTGCAGCT
CGTGCCCGATTCAATGCCACTATTAGTATTCCCTCACTTCGACGTTTCAC
TACTACAGCAGTAGCATACTACCCATGATTATCTGGCAGAAAGTTAATTA
CTGGTGTTCCAGACCATATATGCTTGACATGTCAACGAAACCTCTGAGTC
CACATATTGTTGTGACCTCAAACGTACGCCGAATTTTGTTCCAATACTTG
CATTGAGATGTCAGCGCCCAAAGATGTCCATAGCAGAAAGGAGCGGCCTC
CAACGTGCCGTGTCGTTTCTTTTGATACCACCTGATGACACGTATTGGCG
TGGGGCCGTCCTTAACGTCGAAACCCCTTCTATTGTAACATTGCTGTACT
GCGAAGCCAAGATGACTCACAAAACGCGTTCTACTCTGCATGCCTATCAG
AGAGCTCATTTCAAACGGCGCCGACGTGAAGGTAGAGGATAACCATGGCC
GAACGGCCCTCCACGAAGCTTGCCGTGCCGCCGACCACTTGGCCGTGGAG
GTGAGAAAGCGGACGAACTCGGACCGCCACCCAATCATAACGGTATTGAC
GTATTTCTGCCCCCCAGAAACCGCGATCAGGCCCCCCGGCCGAGGTACAC
TCCGTAGCGAGAACGAGGGTGACTTTGTCGTGGAGACCACGAGAAAGGCT
TGCTTCGAGACACATCTCAGCAATAGGTCCATCACTAACCTACCTGCTGG
AGTGCCATCAGCCGTTTACAGACAAGGCGACAGGACCGTTTCTGAGAGAT
ACGTCGCCGTCGTTTGCTGCTGCTCGTCGCTTTTTCAAGCCAATGCGCCG
CGGGCTCTTCGTTGTGGCAAAACGCCAAGCATAACAACCCGGTACGTCTT
TTGCACTGAATGTGATGCACAGATCCTACTGAAAAGCGGGGCGAACCCTC
TACAGGAAGACGATCGTGGCCGAACTCCGTTTGAAACGGCCACCGCAAAG
AGACACCGGTAAGGAAAACAACCTGCATCCGCAATGCCGACCGTCGAATC
ATTTTTTTCCCTTGCAACGTAGACGTGTGTGTGCGAGCACACACCCCATT
CTGTCCGGCCTCGCGCGAGCAAGGCCCTCCTTGCCACATTGGCAACGAAG
TTGGTCACGTCTTTGTCCTGACTATTCTCAACATGCCTCTATGTTTGACG
CCCACTCACTCTAGGCCGTCATAAGGGAAAGACGATGATCAATTTTTCTA
CCAACGTACACACACACACGGCGAAGGGAACAGAATGACAAAAATTTCTA
CGTACTGATGGTACATAGTAAGGCAGGCCAGAGGTAGGTGTTGAAAGTGT
GTCTCTACGAAGAGTAGGACTGACGTGCTCCATTCCAGAAGCGGGTGCGT
GGTCATTGGCCAAACATACCCCTTCCCTCTTGTGCCCCCACCTCCACGGC
ACCGCGCGCGCGCTCAAAGGCGTCTCCTGGATGCTGTGTTCCGGAAAAAG
CTGTCGACAAGACGGTACCTCCAGCTGTGTGCCAGAGTCACCGCCAAGAA
CTCTGTTTCCAGAATCATGCGGGGTTTCGTCCCATTGTGCGACACCTGTC
GAGTGCGGCCGGCGGAAGCATGCGACGCGCAGAAGCGAGACGACTTTGCC
GCCTGGGTGTTCAAGCACCGCCGGTGGCCGAAGGCAGGGGAAGGGAAGTG
GAGGGAGGTGCGGCCGTCCTGCGTGGAGAAGAAACCAAGCAGCAGCACAA
ACAAACTCAACACCGAAGGCGGTGACGACAAAGACGACGGGATGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7814:2036..5332-

>mRNA_E_fasciculatus_S2_contig7814.15984.1 ID=mRNA_E_fasciculatus_S2_contig7814.15984.1|Name=mRNA_E_fasciculatus_S2_contig7814.15984.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1317bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7814:2036..5332- (Ectocarpus fasciculatus EfasUO2)
ATGAGCACGGACGCGATCGCCTCTTGGCTTCGTGTTCGGCAAATAAACTC
TTTGGCCGGTCACTTCCTGGCGAAGGCAGCGTCTTGCGATGATTATGAAC
CCGATAAGTTGAAAGGAAATGCGACCCTCGCCAGCCTAAAAAGATCGCAG
CCTATGCACCACCGCGTCTTCTGGCGAGAAGAGACTACATCCGCGTCGCT
ATGGGAAGGCGCTTATCGAGCCATAGAGGACGCAGCGGCCGCGAAGGGCA
GCAAAAAAAAACGAAACTCTCCAACACCGCCTTCTTCCTTCTCCTCACCC
CAAGGTCCCGACGACCCAAAACCAAACAAACGGCTTAGTCCCGCCGCTAT
GATTCGACAGATATCGAAGGCTTCGGATTTGCAACGGCTAGCTCGAGTGC
TTGACAATAGGAGAATCAACACTTCGTGCAGGGAGACATTCGCGGTGGCC
GTGCGAGACGCCAACCCGGCCGTTGTTGAGATGTGGCTACACCACGGCAA
AAAGCACAAGGGTGCCTACTTTCTTGAAGCTTTTCGTGCCTGGGGGGAAG
CTGCTGGTGCTACCGGCGGTGTTGGCGGCAGGGCGGGCAATCGGTCTCCA
TCTAGCATCCCATTACACCTGTCGTGCCATGCAGGCGCGCCAGGAATCGT
GTCGGTGCTCCTGCGCTTCATGAACGAGTCGTACTCGTGCGATGATCGCG
TCGCCATGGTGAACGCGAGAGATCTCAATGGAAGGACGGCTCTGCACTTA
TCGAGCTGGTCGCCGAGGCCTCATTGTCCCGGTAGAAGAAACATCATTGT
CAGAGAGCTCATTTCAAACGGCGCCGACGTGAAGGTAGAGGATAACCATG
GCCGAACGGCCCTCCACGAAGCTTGCCGTGCCGCCGACCACTTGGCCGTG
GAGATCCTACTGAAAAGCGGGGCGAACCCTCTACAGGAAGACGATCGTGG
CCGAACTCCGTTTGAAACGGCCACCGCAAAGAGACACCGGCGTCTCCTGG
ATGCTGTGTTCCGGAAAAAGCTGTCGACAAGACGGTACCTCCAGCTGTGT
GCCAGAGTCACCGCCAAGAACTCTGTTTCCAGAATCATGCGGGGTTTCGT
CCCATTGTGCGACACCTGTCGAGTGCGGCCGGCGGAAGCATGCGACGCGC
AGAAGCGAGACGACTTTGCCGCCTGGGTGTTCAAGCACCGCCGGTGGCCG
AAGGCAGGGGAAGGGAAGTGGAGGGAGGTGCGGCCGTCCTGCGTGGAGAA
GAAACCAAGCAGCAGCACAAACAAACTCAACACCGAAGGCGGTGACGACA
AAGACGACGGGATGTGA
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