mRNA_E_fasciculatus_S2_contig7813.15983.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7813.15983.1
Unique NamemRNA_E_fasciculatus_S2_contig7813.15983.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7813.15983.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM74_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.210e-18
Identity = 84/101 (83.17%), Postives = 85/101 (84.16%), Query Frame = 1 
Query:    1 MRSVGAREEARDAARLREAAXXXXXXXXXXXXXXXLVERTRDLKQTVSELERQKMELNKRLAEKKKRRXXXXXXXXXXXXXXXRDEEAKALRKRMGSSVKE 303
            MRSVGAREEARDAARLREAA    XXXXXXXXX  LVERTRDLKQTVSELERQKMELNK+L       XXXXXXXXXXXXXXX   EAKALRKRMGSSVKE
Sbjct:  116 MRSVGAREEARDAARLREAAEIQEXXXXXXXXXHQLVERTRDLKQTVSELERQKMELNKKLXXXXXXXXXXXXXXXXXXXXXXXXXEAKALRKRMGSSVKE 216
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7813.15983.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ4_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.660e-5
Identity = 36/47 (76.60%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  163 MELNKRLAEKKKRRXXXXXXXXXXXXXXXRDEEAKALRKRMGSSVKE 303
            MELNKRLAEKKKRR          XXXX RDEEAKALRKRMGSSVKE
Sbjct:    1 MELNKRLAEKKKRRELREAESRRRXXXXARDEEAKALRKRMGSSVKE 47
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7813.15983.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.210e-1883.17protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.660e-576.60protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7813contigE_fasciculatus_S2_contig7813:4502..5204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size305
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842443.1859736-CDS-E_fasciculatus_S2_contig7813:4501..46451696842443.1859736-CDS-E_fasciculatus_S2_contig7813:4501..4645Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7813 4502..4645 -
1696842443.2032497-CDS-E_fasciculatus_S2_contig7813:5045..52041696842443.2032497-CDS-E_fasciculatus_S2_contig7813:5045..5204Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7813 5046..5204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7813.15983.1prot_E_fasciculatus_S2_contig7813.15983.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7813 4502..5204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7813.15983.1

>prot_E_fasciculatus_S2_contig7813.15983.1 ID=prot_E_fasciculatus_S2_contig7813.15983.1|Name=mRNA_E_fasciculatus_S2_contig7813.15983.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=101bp
MRSVGAREEARDAARLREAAEMQERERRRRLEKRQLVERTRDLKQTVSEL
ERQKMELNKRLAEKKKRRELREAESRRRKEKRARDEEAKALRKRMGSSVK
E
back to top

mRNA from alignment at E_fasciculatus_S2_contig7813:4502..5204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7813.15983.1 ID=mRNA_E_fasciculatus_S2_contig7813.15983.1|Name=mRNA_E_fasciculatus_S2_contig7813.15983.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=703bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7813:4502..5204- (Ectocarpus fasciculatus EfasUO2)
ATGCGCTCCGTGGGGGCACGGGAGGAGGCCAGGGATGCGGCGCGACTCCG
CGAGGCGGCGGAGATGCAGGAGCGAGAGCGGCGGCGGAGGCTGGAGAAAC
GCCAGCTGGTGGAGCGGACGCGGGACCTGAAGCAGACGGTCTCTGAGCTG
GAGAGGCAGGTATGGTGGTGGTGGGTCCCGTGTGGCGCATAGTATTATGT
GGTGGACGTGTCCGTGTGAGGGGCATCGCCGGAGTGCTTGGTTGTTGTAG
GGCTGTTTCGTGCTTTCCTTTCGTTTGTTTCGAGAAGGAGGAAGCCCTCA
CAATGGAGGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGA
GTGAGAGATGGGTGTGCTTGCTTGTGTGGATAAGGTGTGGTGTGCGCCAG
TGACGTGGTGCTTCATTGTAATCTCAAGGACCGATAGCAGGAAGGAAGTG
TCCGTGCGCGATGCTTGAAAACGCCCGCCGTATTGCAGAAGTGAGGGAGA
GTGTTTTTTTTTTTGTTGTGTCGCGCACCCGAACAACACGGATGAAACCG
AAAAATCAGAAAATGGAGCTGAACAAAAGGCTGGCGGAGAAGAAGAAGCG
GCGAGAGCTGCGCGAGGCCGAGTCGAGGCGGCGTAAGGAGAAGCGAGCGA
GGGACGAAGAGGCCAAGGCGCTCCGCAAGCGGATGGGCTCCAGCGTAAAG
GAA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7813:4502..5204-

>mRNA_E_fasciculatus_S2_contig7813.15983.1 ID=mRNA_E_fasciculatus_S2_contig7813.15983.1|Name=mRNA_E_fasciculatus_S2_contig7813.15983.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=303bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7813:4502..5204- (Ectocarpus fasciculatus EfasUO2)
ATGCGCTCCGTGGGGGCACGGGAGGAGGCCAGGGATGCGGCGCGACTCCG
CGAGGCGGCGGAGATGCAGGAGCGAGAGCGGCGGCGGAGGCTGGAGAAAC
GCCAGCTGGTGGAGCGGACGCGGGACCTGAAGCAGACGGTCTCTGAGCTG
GAGAGGCAGAAAATGGAGCTGAACAAAAGGCTGGCGGAGAAGAAGAAGCG
GCGAGAGCTGCGCGAGGCCGAGTCGAGGCGGCGTAAGGAGAAGCGAGCGA
GGGACGAAGAGGCCAAGGCGCTCCGCAAGCGGATGGGCTCCAGCGTAAAG
GAA
back to top